MD03G1202000.v1.1

DNA binding domain with preference for A/T rich regions

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
27632491 .. 27636379
3889 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1202000.v1.1.491

Sequence Viewer

Length: 1305 bp
ATGAGCCAATCGGATCAAGGGAACACCCCTGATGGCTCTTCAAGTATCCCCATGAAGCGAAAACGTGGCCGTCCACGGAAATATCCCAAACTAGATCTGGAAGAGAATGCTCATGTGACAAACACTCCAAATCTGAATATGGGGGAAAATGCTGGTAATGGTGTTCCTTCTGCTCCTCCTGGGTTTTTAGGGAGGAATGGATACCAGCCCCATCGTCGAGCTCCCACTAATGGTGCAGCTGATGTCATGGTCGGAACAGTAGTTTCTGGTGTCATTGATGCAACATTTGATGGAGGATATCTACTTAGTGTTAGGGTTGGCAACTCTCCCACCACTTTGAGGGGTGTCATCTTCAAGCCTGGACGTTACGTTCCTGTTTCAGCGGAGAATGATGTGGCCCCAGATGTTCAAATGATAAGGCGAAATGTGATTCCAAATCCAGCTGAGATCTCTCATTTCCATGGTTCCAGCCCTCGTTCTAGAGATGCCATTCGATCTGTTAATCATGTAACATCAAAACGCAAACATATGGTTCCAGTGGCACCCCAAACTGCTAACCCACTACTGTCCAGAGGCAACTTGTTGCCTGTTATACTGCAACCTCGAAATTTATCTGAAGGGGTACCGCTCACTGGTTTACCAAATTCTGTTGCTCCAGGTGCTCCTCCGACTAATGGGTCCATACGCACCAACCGGGTGCCACTCACCAATGAAGTTGCAAACCAATCTTCAGATCTGGCAACTTCAATAGTTAAGCAGGTTCCTTCGGTTCCTCCATCAAATGGGTCGATATCTACCAACCAGATTCCGACAGTTGGAAATCAATCGTTGGTCTTCGAAGGTGGACAAAATGAGAATGGTACTTGTAATCAACCATCGACAGAGATGCTGAAGGCAGAAGCCAAATCAACGAGACTCCCAAATATACCTTTTGAAAAACTGGTTACCGAGGTAGTTAAGAGGATTGATACACCCTCACAAGCCCCCGCACATGCCCCCTTACATTCAACTGAGATAGACATTGAGGGTAGCAAGTCAACTGGCAGTGAGCTGGAGGACGATATGAATCAGCCTCTAGTAATTGAACCTCTGCAAGCCATACAGCCTAAAGACCACTCTGTGCCACATTCAAATCCCCCGGAGGACGACAGAAATGGAAAAATGTCTGAGCTGTTGCAGGTTTTGCAGGAAAGCATGAGGGAAAGTGAGTCAACCACAGCTTCGAGAGTGAAGTCGGATGAACCAAGCCAAACTGCGCTCGGAGGTGAAGAATCCGATCGTTCAAGAAAACCTTCCGAGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

435

Amino Acids

46.4

Weight (kDa)

6.57

Isoelectric Point (pI)

54.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 676
Acc36I ACCTGC 2 cut(s) 748, 1168
Acc65I GGTACC 1 cut(s) 622
AccB1I GGYRCC 3 cut(s) 541, 622, 697
AccB7I CCANNNNNTGG 1 cut(s) 782
AccBSI CCGCTC 1 cut(s) 628
AciI CCGC 3 cut(s) 383, 626, 987
AclWI GGATC 1 cut(s) 21
AcoI YGGCCR 1 cut(s) 67
AcsI RAATTY 2 cut(s) 607, 643
AcuI CTGAAG 3 cut(s) 636, 714, 911
AdeI CACNNNGTG 1 cut(s) 1120
AfaI GTAC 2 cut(s) 624, 862
AfiI CCNNNNNNNGG 6 cut(s) 230, 339, 632, 674, 782, 815
AgsI TTSAA 9 cut(s) 42, 355, 410, 747, 935, 1008, 1085, 1131, 1284
AjnI CCWGG 3 cut(s) 178, 358, 655
AloI GAACNNNNNNTCC 2 cut(s) 354, 386
AluBI AGCT 6 cut(s) 221, 239, 443, 1051, 1171, 1220
AluI AGCT 6 cut(s) 221, 239, 443, 1051, 1171, 1220
Alw21I GWGCWC 2 cut(s) 223, 664
Alw26I GTCTC 1 cut(s) 907
AlwI GGATC 1 cut(s) 21
AoxI GGCC 2 cut(s) 67, 396
ApeKI GCWGC 1 cut(s) 236
ApoI RAATTY 2 cut(s) 607, 643
Asp700I GAANNNNTTC 1 cut(s) 1291
Asp718I GGTACC 1 cut(s) 622
AspLEI GCGC 1 cut(s) 1258
AspS9I GGNCC 2 cut(s) 397, 678
AsuC2I CCSGG 2 cut(s) 695, 1139
AsuHPI GGTGA 2 cut(s) 697, 1277
AsuII TTCGAA 1 cut(s) 837
AvaII GGWCC 1 cut(s) 678
BanI GGYRCC 3 cut(s) 541, 622, 697
BanII GRGCYC 1 cut(s) 223
BbsI GAAGAC 1 cut(s) 826
Bbv12I GWGCWC 2 cut(s) 223, 664
BbvI GCAGC 1 cut(s) 248
BccI CCATC 5 cut(s) 26, 219, 284, 784, 883
BceAI ACGGC 1 cut(s) 54
BcgI CGANNNNNNTGC 2 cut(s) 868, 902
BciT130I CCWGG 3 cut(s) 180, 360, 657
BciVI GTATCC 2 cut(s) 56, 194
BcnI CCSGG 2 cut(s) 695, 1139
BcoDI GTCTC 1 cut(s) 907
BfaI CTAG 3 cut(s) 92, 480, 1076
BfuAI ACCTGC 2 cut(s) 748, 1168
BfuI GTATCC 2 cut(s) 56, 194
BglII AGATCT 3 cut(s) 94, 447, 733
BisI GCNGC 1 cut(s) 237
BlsI GCNGC 1 cut(s) 238
Bme1390I CCNGG 5 cut(s) 180, 360, 657, 695, 1139
Bme18I GGWCC 1 cut(s) 678
BmgT120I GGNCC 2 cut(s) 397, 678
BmiI GGNNCC 9 cut(s) 399, 466, 534, 543, 624, 679, 699, 762, 771
BmrFI CCNGG 5 cut(s) 180, 360, 657, 695, 1139
BmsI GCATC 3 cut(s) 268, 475, 876
BpiI GAAGAC 1 cut(s) 826
BpmI CTGGAG 2 cut(s) 639, 1073
Bpu14I TTCGAA 1 cut(s) 837
BpuMI CCSGG 2 cut(s) 695, 1139
BsaBI GATNNNNATC 1 cut(s) 1065
BsaJI CCNNGG 6 cut(s) 74, 179, 460, 948, 1137, 1296
BsaXI ACNNNNNCTCC 2 cut(s) 109, 139
Bsc4I CCNNNNNNNGG 6 cut(s) 230, 339, 632, 674, 782, 815
Bse1I ACTGG 4 cut(s) 536, 637, 945, 1045
Bse8I GATNNNNATC 1 cut(s) 1065
BseBI CCWGG 3 cut(s) 180, 360, 657
BseDI CCNNGG 6 cut(s) 74, 179, 460, 948, 1137, 1296
BseGI GGATG 1 cut(s) 1243
BseJI GATNNNNATC 1 cut(s) 1065
BseLI CCNNNNNNNGG 6 cut(s) 230, 339, 632, 674, 782, 815
BseMII CTCAG 3 cut(s) 435, 1002, 1158
BseNI ACTGG 4 cut(s) 536, 637, 945, 1045
BseRI GAGGAG 2 cut(s) 165, 654
BseXI GCAGC 1 cut(s) 248
BsgI GTGCAG 1 cut(s) 255
Bsh1285I CGRYCG 1 cut(s) 1279
BshFI GGCC 2 cut(s) 69, 398
BshNI GGYRCC 3 cut(s) 541, 622, 697
BsiEI CGRYCG 1 cut(s) 1279
BsiHKAI GWGCWC 2 cut(s) 223, 664
BsiSI CCGG 2 cut(s) 694, 1139
BslI CCNNNNNNNGG 6 cut(s) 230, 339, 632, 674, 782, 815
BsmAI GTCTC 1 cut(s) 907
BsmI GAATGC 1 cut(s) 112
BsnI GGCC 2 cut(s) 69, 398
Bsp119I TTCGAA 1 cut(s) 837
Bsp1286I GDGCHC 2 cut(s) 223, 664
Bsp143I GATC 6 cut(s) 13, 94, 447, 494, 733, 1276
Bsp19I CCATGG 1 cut(s) 460
BspACI CCGC 3 cut(s) 383, 626, 987
BspANI GGCC 2 cut(s) 69, 398
BspCNI CTCAG 3 cut(s) 436, 1003, 1159
BspLI GGNNCC 9 cut(s) 399, 466, 534, 543, 624, 679, 699, 762, 771
BspMI ACCTGC 2 cut(s) 748, 1168
BspPI GGATC 1 cut(s) 21
BspQI GCTCTTC 1 cut(s) 43
BspT104I TTCGAA 1 cut(s) 837
BspT107I GGYRCC 3 cut(s) 541, 622, 697
BsrBI CCGCTC 1 cut(s) 628
BsrI ACTGG 4 cut(s) 536, 637, 945, 1045
BssECI CCNNGG 6 cut(s) 74, 179, 460, 948, 1137, 1296
BssMI GATC 6 cut(s) 13, 94, 447, 494, 733, 1276
BssT1I CCWWGG 1 cut(s) 460
Bst2UI CCWGG 3 cut(s) 180, 360, 657
Bst4CI ACNGT 3 cut(s) 259, 567, 814
Bst6I CTCTTC 2 cut(s) 43, 96
BstAPI GCANNNNNTGC 1 cut(s) 1183
BstBI TTCGAA 1 cut(s) 837
BstC8I GCNNGC 1 cut(s) 1095
BstDEI CTNAG 4 cut(s) 305, 444, 1011, 1167
BstDSI CCRYGG 2 cut(s) 74, 460
BstEII GGTNACC 1 cut(s) 943
BstF5I GGATG 1 cut(s) 1243
BstHHI GCGC 1 cut(s) 1258
BstKTI GATC 6 cut(s) 16, 97, 450, 497, 736, 1279
BstMAI GTCTC 1 cut(s) 907
BstMBI GATC 6 cut(s) 13, 94, 447, 494, 733, 1276
BstMCI CGRYCG 1 cut(s) 1279
BstMWI GCNNNNNNNGC 2 cut(s) 659, 1183
BstNI CCWGG 3 cut(s) 180, 360, 657
BstNSI RCATGY 1 cut(s) 995
BstPI GGTNACC 1 cut(s) 943
BstSCI CCNGG 5 cut(s) 178, 358, 655, 693, 1137
BstV1I GCAGC 1 cut(s) 248
BstV2I GAAGAC 1 cut(s) 826
BstX2I RGATCY 3 cut(s) 94, 447, 733
BstYI RGATCY 3 cut(s) 94, 447, 733
BsuI GTATCC 2 cut(s) 56, 194
BsuRI GGCC 2 cut(s) 69, 398
BtgI CCRYGG 2 cut(s) 74, 460
BtsCI GGATG 1 cut(s) 1243
BtsI GCAGTG 1 cut(s) 1051
BtsIMutI CAGTG 3 cut(s) 543, 630, 1051
BveI ACCTGC 2 cut(s) 748, 1168
Cac8I GCNNGC 1 cut(s) 1095
CfoI GCGC 1 cut(s) 1258
Cfr13I GGNCC 2 cut(s) 397, 678
Csp6I GTAC 2 cut(s) 623, 861
CviAII CATG 8 cut(s) 52, 113, 247, 461, 506, 992, 1195, 1302
CviQI GTAC 2 cut(s) 623, 861
DdeI CTNAG 4 cut(s) 305, 444, 1011, 1167
DpnI GATC 6 cut(s) 15, 96, 449, 496, 735, 1278
DpnII GATC 6 cut(s) 13, 94, 447, 494, 733, 1276
DraIII CACNNNGTG 1 cut(s) 1120
DrdI GACNNNNNNGTC 1 cut(s) 676
DseDI GACNNNNNNGTC 1 cut(s) 676
EaeI YGGCCR 1 cut(s) 67
Eam1104I CTCTTC 2 cut(s) 43, 96
EarI CTCTTC 2 cut(s) 43, 96
Ecl136II GAGCTC 1 cut(s) 221
Eco130I CCWWGG 1 cut(s) 460
Eco24I GRGCYC 1 cut(s) 223
Eco32I GATATC 2 cut(s) 299, 792
Eco47I GGWCC 1 cut(s) 678
Eco53kI GAGCTC 1 cut(s) 221
Eco57I CTGAAG 3 cut(s) 636, 714, 911
Eco91I GGTNACC 1 cut(s) 943
EcoICRI GAGCTC 1 cut(s) 221
EcoO65I GGTNACC 1 cut(s) 943
EcoRII CCWGG 3 cut(s) 178, 358, 655
EcoRV GATATC 2 cut(s) 299, 792
EcoT14I CCWWGG 1 cut(s) 460
EcoT38I GRGCYC 1 cut(s) 223
ErhI CCWWGG 1 cut(s) 460
FaeI CATG 8 cut(s) 55, 116, 250, 464, 509, 995, 1198, 1305
FalI AAGNNNNNCTT 1 cut(s) 1276
FatI CATG 8 cut(s) 51, 112, 246, 460, 505, 991, 1194, 1301
FauI CCCGC 1 cut(s) 994
FauNDI CATATG 1 cut(s) 528
Fnu4HI GCNGC 1 cut(s) 237
FokI GGATG 1 cut(s) 1250
FriOI GRGCYC 1 cut(s) 223
Fsp4HI GCNGC 1 cut(s) 237
FspBI CTAG 3 cut(s) 92, 480, 1076
GlaI GCGC 1 cut(s) 1257
GluI GCNGC 1 cut(s) 237
GsuI CTGGAG 2 cut(s) 639, 1073
HaeIII GGCC 2 cut(s) 69, 398
HapII CCGG 2 cut(s) 694, 1139
HhaI GCGC 1 cut(s) 1258
Hin1II CATG 8 cut(s) 55, 116, 250, 464, 509, 995, 1198, 1305
Hin6I GCGC 1 cut(s) 1256
HinP1I GCGC 1 cut(s) 1256
HincII GTYRAC 2 cut(s) 1038, 1212
HindII GTYRAC 2 cut(s) 1038, 1212
HinfI GANTC 6 cut(s) 430, 805, 915, 1066, 1208, 1271
HpaII CCGG 2 cut(s) 694, 1139
HphI GGTGA 2 cut(s) 697, 1277
Hpy166II GTNNAC 5 cut(s) 74, 638, 845, 1038, 1212
Hpy188III TCNNGA 5 cut(s) 98, 480, 570, 1224, 1284
Hpy8I GTNNAC 5 cut(s) 74, 638, 845, 1038, 1212
Hpy99I CGWCG 1 cut(s) 219
HpyAV CCTTC 6 cut(s) 177, 611, 774, 833, 886, 1302
HpyCH4III ACNGT 3 cut(s) 259, 567, 814
HpyCH4IV ACGT 3 cut(s) 64, 364, 369
HpyCH4V TGCA 7 cut(s) 236, 281, 598, 719, 1093, 1177, 1186
HpyF10VI GCNNNNNNNGC 2 cut(s) 659, 1183
HpyF3I CTNAG 4 cut(s) 305, 444, 1011, 1167
HpySE526I ACGT 3 cut(s) 64, 364, 369
Hsp92II CATG 8 cut(s) 55, 116, 250, 464, 509, 995, 1198, 1305
HspAI GCGC 1 cut(s) 1256
KpnI GGTACC 1 cut(s) 626
Kzo9I GATC 6 cut(s) 13, 94, 447, 494, 733, 1276
LguI GCTCTTC 1 cut(s) 43
LmnI GCTCC 4 cut(s) 178, 226, 658, 667
Lsp1109I GCAGC 1 cut(s) 248
LweI GCATC 3 cut(s) 268, 475, 876
MaeI CTAG 3 cut(s) 92, 480, 1076
MaeII ACGT 3 cut(s) 64, 364, 369
MaeIII GTNAC 4 cut(s) 115, 365, 508, 943
MalI GATC 6 cut(s) 15, 96, 449, 496, 735, 1278
MbiI CCGCTC 1 cut(s) 628
MboI GATC 6 cut(s) 13, 94, 447, 494, 733, 1276
MboII GAAGA 6 cut(s) 30, 113, 343, 720, 826, 1280
MflI RGATCY 3 cut(s) 94, 447, 733
MhlI GDGCHC 2 cut(s) 223, 664
MluCI AATT 3 cut(s) 607, 643, 1080
MlyI GAGTC 2 cut(s) 909, 1217
MmeI TCCRAC 5 cut(s) 232, 692, 796, 833, 1215
MroXI GAANNNNTTC 1 cut(s) 1291
MseI TTAA 3 cut(s) 501, 753, 957
MslI CAYNNNNRTG 1 cut(s) 459
MspA1I CMGCKG 3 cut(s) 239, 383, 443
MspI CCGG 2 cut(s) 694, 1139
MspR9I CCNGG 5 cut(s) 180, 360, 657, 695, 1139
Mva1269I GAATGC 1 cut(s) 112
MvaI CCWGG 3 cut(s) 180, 360, 657
MwoI GCNNNNNNNGC 2 cut(s) 659, 1183
NciI CCSGG 2 cut(s) 695, 1139
NcoI CCATGG 1 cut(s) 460
NdeI CATATG 1 cut(s) 528
NdeII GATC 6 cut(s) 13, 94, 447, 494, 733, 1276
NlaIII CATG 8 cut(s) 55, 116, 250, 464, 509, 995, 1198, 1305
NlaIV GGNNCC 9 cut(s) 399, 466, 534, 543, 624, 679, 699, 762, 771
NmuCI GTSAC 1 cut(s) 115
NspI RCATGY 1 cut(s) 995
NspV TTCGAA 1 cut(s) 837
PciSI GCTCTTC 1 cut(s) 43
PctI GAATGC 1 cut(s) 112
PdmI GAANNNNTTC 1 cut(s) 1291
PfeI GAWTC 4 cut(s) 430, 805, 1066, 1271
PflMI CCANNNNNTGG 1 cut(s) 782
PkrI GCNGC 1 cut(s) 238
Ple19I CGATCG 1 cut(s) 1279
PleI GAGTC 2 cut(s) 909, 1216
PpsI GAGTC 2 cut(s) 909, 1216
Psp124BI GAGCTC 1 cut(s) 223
Psp6I CCWGG 3 cut(s) 178, 358, 655
PspEI GGTNACC 1 cut(s) 943
PspGI CCWGG 3 cut(s) 178, 358, 655
PspN4I GGNNCC 9 cut(s) 399, 466, 534, 543, 624, 679, 699, 762, 771
PspPI GGNCC 2 cut(s) 397, 678
PsuI RGATCY 3 cut(s) 94, 447, 733
PvuI CGATCG 1 cut(s) 1279
PvuII CAGCTG 2 cut(s) 239, 443
RsaI GTAC 2 cut(s) 624, 862
RsaNI GTAC 2 cut(s) 623, 861
RseI CAYNNNNRTG 1 cut(s) 459
SacI GAGCTC 1 cut(s) 223
SapI GCTCTTC 1 cut(s) 43
SaqAI TTAA 3 cut(s) 501, 753, 957
SatI GCNGC 1 cut(s) 237
Sau3AI GATC 6 cut(s) 13, 94, 447, 494, 733, 1276
Sau96I GGNCC 2 cut(s) 397, 678
SchI GAGTC 2 cut(s) 909, 1217
ScrFI CCNGG 5 cut(s) 180, 360, 657, 695, 1139
SduI GDGCHC 2 cut(s) 223, 664
SfaNI GCATC 3 cut(s) 268, 475, 876
SfuI TTCGAA 1 cut(s) 837
SinI GGWCC 1 cut(s) 678
SmiMI CAYNNNNRTG 1 cut(s) 459
Sse9I AATT 3 cut(s) 607, 643, 1080
SsiI CCGC 3 cut(s) 383, 626, 987
SspMI CTAG 3 cut(s) 92, 480, 1076
SstI GAGCTC 1 cut(s) 223
StyD4I CCNGG 5 cut(s) 178, 358, 655, 693, 1137
StyI CCWWGG 1 cut(s) 460
TaaI ACNGT 3 cut(s) 259, 567, 814
TaiI ACGT 3 cut(s) 67, 367, 372
TaqI TCGA 7 cut(s) 217, 493, 604, 788, 837, 878, 1223
TasI AATT 3 cut(s) 607, 643, 1080
TfiI GAWTC 4 cut(s) 430, 805, 1066, 1271
Tru1I TTAA 3 cut(s) 501, 753, 957
Tru9I TTAA 3 cut(s) 501, 753, 957
TscAI CASTG 3 cut(s) 543, 637, 1051
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 1 cut(s) 236
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 4 cut(s) 68, 726, 1079, 1254
TspGWI ACGGA 1 cut(s) 91
TspRI CASTG 3 cut(s) 543, 637, 1051
Van91I CCANNNNNTGG 1 cut(s) 782
VpaK11BI GGWCC 1 cut(s) 678
XapI RAATTY 2 cut(s) 607, 643
XbaI TCTAGA 1 cut(s) 479
XceI RCATGY 1 cut(s) 995
XcmI CCANNNNNNNNNTGG 1 cut(s) 94
XmnI GAANNNNTTC 1 cut(s) 1291
XspI CTAG 3 cut(s) 92, 480, 1076
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.