Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0006724

Physical Location & Seq

Genomic Coordinates Reverse (-)

33241666 .. 33242904

Gene Structure 1239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG302200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGCAAGGAGATCAAGAAAACATTGCTGATGCCTTATCAAACATCCCTGTGAAGCGTAAACGTGGACGCCCACGGAAATATCCAAGACTTGATCCTCAAGAGAATGCTTCTCCTGTGCCCAGGTATCAGAACCTGAACTTGGGAGAGAATGCTGCTGTTCCTCCTCCTGGATTTGTAAGGAGCAACGGAAACCAGGCCCAACAAGCAGCACCAGCTAATGGTACAAGTACAACTGATAACATGGTGGGAATGGTTGTTTCTGGTGTTGTTGAAGCATCATTTGACGCCGGCTACCTTCTCAGAGTTAGGGTTGGTAATACTGGTACCACTTTGAGGGGTGTTGTCTTCAAGCCTGGACATTACGCTCCTGTTGTACCAGAAAATGATGTGGCTCCAGATGTTGAAATGATCCGACGGCATGAAATTGCCCTCCCAGTTGAAAACCATTCTTCTGTTCATGGCCATAAACCTCATTCAAGAGATGCTTCCCACCCCGTTAATCATGTGGCTTCAGAAGGCCGACATGTGGCTCCGGTGGCTGCACAAAATGTTAATCGAGTAATGTCCAGAGGCAACTTGATGCCTGTTGTGCTCGAACCTTGCAAGGTATCAAATGGCCCGGCACTCACCAGTGAATCGAATCCCGTTGCAACCCAGGCTGCAACCGTAGCAACCTCGAAAGGGAAACAGGTTGTATCAGCTGCTCCATCGAATGGGTGTTCAATTCCCAACGACCAGGCGTCAGCAGTTCAAAATCAAATGCTCGGGTCCCAACCTCACACCGGTGATCAGGTAATATATGATGCTAAAATAAATGAGAATGGTCCTACTGATCCACCCTCTGTAGAAGCCAAGCAAATGACATTGCCTGAGAATGTGCCCTCAGAATCAACTGAGAGTCAGGTAGAGGCTAGTAACTTGGCTACTCAACCCTTAGTCGAGCCCCTGCAAGCAGTAGAGCATAAAGACCATCCTGCATCTGCTTCCAAACCAATGGAGGATGGCAGAAATGGCAAAATGTCCGAGCTATTGCAGGTTTTGCAGGAAAGCATGAAGGAGAGGATGAAGGACCAAACTGAGAAACTGTTCGGAGATGGACAAAATGATCATTCAAGCACACCTTCACAGGCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

378

Amino Acids

40.31

Weight (kDa)

6.01

Isoelectric Point (pI)

50.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54930 AT5G54930
fragaria_vesca	FvH4_3g22550 FvH4_3g22550 FvH4_3g22550
malus_domestica	MD03G1202000.v1.1 MD11G1219200.v1.1
prunus_persica	Prupe.4G212100_v2.0.a1 Prupe.4G212100_v2.0.a1 Prupe.4G212100_v2.0.a1 Prupe.4G212100_v2.0.a1
pyrus_communis	pycom03g15330 pycom11g19310
rosa_chinensis	RchiOBHm_Chr5g0039291
rosa_laevigata	RLG00000033904
rosa_multiflora	Rmu_ssc0000410.1_g000050
rosa_roxburghii	Rroxscaffold_1G00040490 Rroxscaffold_1G00041850
rosa_rugosa	Rorug05G0177800 Rorug05G0177900 Rorug05G0178000
rosa_samantha	Rh5AG264200 Rh5BG269300 Rh5CG302200 Rh5DG276900
rosa_wichuraiana	Rw5G024780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1024
Acc65I	GGTACC	1 cut(s)	323
AccB1I	GGYRCC	1 cut(s)	323
AccB7I	CCANNNNNTGG	2 cut(s)	218, 713
AclWI	GGATC	3 cut(s)	86, 403, 827
AcoI	YGGCCR	1 cut(s)	460
AcuI	CTGAAG	1 cut(s)	495
AcyI	GRCGYC	3 cut(s)	67, 285, 740
AfaI	GTAC	4 cut(s)	223, 229, 325, 375
AfiI	CCNNNNNNNGG	8 cut(s)	139, 167, 218, 333, 526, 681, 713, 782
AflIII	ACRYGT	1 cut(s)	523
AgeI	ACCGGT	1 cut(s)	782
AgsI	TTSAA	8 cut(s)	272, 349, 404, 440, 477, 723, 752, 1113
AhdI	GACNNNNNGTC	1 cut(s)	739
AjnI	CCWGG	6 cut(s)	119, 166, 192, 352, 654, 735
AjuI	GAANNNNNNNTTGG	2 cut(s)	122, 154
AleI	CACNNNNGTG	1 cut(s)	783
AluBI	AGCT	3 cut(s)	215, 701, 1027
AluI	AGCT	3 cut(s)	215, 701, 1027
Alw21I	GWGCWC	1 cut(s)	594
AlwI	GGATC	3 cut(s)	86, 403, 827
AlwNI	CAGNNNCTG	1 cut(s)	133
Ama87I	CYCGRG	1 cut(s)	764
AoxI	GGCC	4 cut(s)	195, 460, 517, 616
ApeKI	GCWGC	5 cut(s)	152, 206, 539, 659, 701
AsiGI	ACCGGT	1 cut(s)	782
Asp700I	GAANNNNTTC	1 cut(s)	1085
Asp718I	GGTACC	1 cut(s)	323
AspS9I	GGNCC	5 cut(s)	196, 617, 768, 824, 1069
AsuC2I	CCSGG	1 cut(s)	620
AsuHPI	GGTGA	2 cut(s)	619, 797
AvaI	CYCGRG	1 cut(s)	764
AvaII	GGWCC	3 cut(s)	768, 824, 1069
BaeGI	GKGCMC	2 cut(s)	120, 882
BalI	TGGCCA	1 cut(s)	462
BanI	GGYRCC	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	945
BbsI	GAAGAC	1 cut(s)	337
Bbv12I	GWGCWC	1 cut(s)	594
BbvI	GCAGC	5 cut(s)	139, 218, 526, 646, 688
BccI	CCATC	4 cut(s)	715, 978, 995, 1088
BceAI	ACGGC	1 cut(s)	431
BciT130I	CCWGG	6 cut(s)	121, 168, 194, 354, 656, 737
BclI	TGATCA	2 cut(s)	787, 1105
BcnI	CCSGG	1 cut(s)	620
BfaI	CTAG	1 cut(s)	912
BfmI	CTRYAG	1 cut(s)	843
BfuAI	ACCTGC	1 cut(s)	1024
BisI	GCNGC	5 cut(s)	153, 207, 540, 660, 702
BlsI	GCNGC	5 cut(s)	154, 208, 541, 661, 703
Bme1390I	CCNGG	7 cut(s)	121, 168, 194, 354, 620, 656, 737
Bme18I	GGWCC	3 cut(s)	768, 824, 1069
BmeRI	GACNNNNNGTC	1 cut(s)	739
BmeT110I	CYCGRG	1 cut(s)	764
BmgT120I	GGNCC	5 cut(s)	196, 617, 768, 824, 1069
BmiI	GGNNCC	5 cut(s)	325, 393, 531, 769, 770
BmrFI	CCNGG	7 cut(s)	121, 168, 194, 354, 620, 656, 737
BmrI	ACTGGG	1 cut(s)	428
BmsI	GCATC	6 cut(s)	19, 284, 472, 570, 793, 986
BmuI	ACTGGG	1 cut(s)	428
BpiI	GAAGAC	1 cut(s)	337
BpmI	CTGGAG	1 cut(s)	378
BpuEI	CTTGAG	1 cut(s)	81
BpuMI	CCSGG	1 cut(s)	620
BsaHI	GRCGYC	3 cut(s)	67, 285, 740
BsaJI	CCNNGG	3 cut(s)	71, 119, 654
BsaWI	WCCGGW	2 cut(s)	532, 782
Bsc4I	CCNNNNNNNGG	8 cut(s)	139, 167, 218, 333, 526, 681, 713, 782
Bse118I	RCCGGY	2 cut(s)	287, 782
Bse1I	ACTGG	3 cut(s)	325, 434, 630
Bse3DI	GCAATG	2 cut(s)	21, 863
BseBI	CCWGG	6 cut(s)	121, 168, 194, 354, 656, 737
BseDI	CCNNGG	3 cut(s)	71, 119, 654
BseGI	GGATG	4 cut(s)	42, 970, 1006, 1068
BseLI	CCNNNNNNNGG	8 cut(s)	139, 167, 218, 333, 526, 681, 713, 782
BseMI	GCAATG	2 cut(s)	21, 863
BseMII	CTCAG	5 cut(s)	313, 861, 885, 897, 1068
BseNI	ACTGG	3 cut(s)	325, 434, 630
BseRI	GAGGAG	1 cut(s)	153
BseSI	GKGCMC	2 cut(s)	120, 882
BseXI	GCAGC	5 cut(s)	139, 218, 526, 646, 688
BsgI	GTGCAG	1 cut(s)	525
BshFI	GGCC	4 cut(s)	197, 462, 519, 618
BshNI	GGYRCC	1 cut(s)	323
BshTI	ACCGGT	1 cut(s)	782
BsiHKAI	GWGCWC	1 cut(s)	594
BsiHKCI	CYCGRG	1 cut(s)	764
BsiSI	CCGG	4 cut(s)	288, 533, 620, 783
BslFI	GGGAC	1 cut(s)	754
BslI	CCNNNNNNNGG	8 cut(s)	139, 167, 218, 333, 526, 681, 713, 782
BsmFI	GGGAC	1 cut(s)	754
BsmI	GAATGC	2 cut(s)	109, 154
BsnI	GGCC	4 cut(s)	197, 462, 519, 618
BsoBI	CYCGRG	1 cut(s)	764
Bsp1286I	GDGCHC	4 cut(s)	120, 594, 882, 945
Bsp143I	GATC	6 cut(s)	10, 91, 408, 787, 832, 1105
BspANI	GGCC	4 cut(s)	197, 462, 519, 618
BspCNI	CTCAG	5 cut(s)	312, 862, 886, 896, 1069
BspLI	GGNNCC	5 cut(s)	325, 393, 531, 769, 770
BspMI	ACCTGC	1 cut(s)	1024
BspPI	GGATC	3 cut(s)	86, 403, 827
BspT107I	GGYRCC	1 cut(s)	323
BsrDI	GCAATG	2 cut(s)	21, 863
BsrFI	RCCGGY	2 cut(s)	287, 782
BsrI	ACTGG	3 cut(s)	325, 434, 630
BssAI	RCCGGY	2 cut(s)	287, 782
BssECI	CCNNGG	3 cut(s)	71, 119, 654
BssMI	GATC	6 cut(s)	10, 91, 408, 787, 832, 1105
BssNI	GRCGYC	3 cut(s)	67, 285, 740
Bst2UI	CCWGG	6 cut(s)	121, 168, 194, 354, 656, 737
Bst4CI	ACNGT	2 cut(s)	667, 1086
BstACI	GRCGYC	3 cut(s)	67, 285, 740
BstAPI	GCANNNNNTGC	1 cut(s)	1039
BstC8I	GCNNGC	2 cut(s)	289, 951
BstDEI	CTNAG	6 cut(s)	299, 870, 883, 894, 934, 1077
BstDSI	CCRYGG	1 cut(s)	71
BstF5I	GGATG	4 cut(s)	42, 970, 1006, 1068
BstKTI	GATC	6 cut(s)	13, 94, 411, 790, 835, 1108
BstMBI	GATC	6 cut(s)	10, 91, 408, 787, 832, 1105
BstMWI	GCNNNNNNNGC	8 cut(s)	203, 212, 536, 589, 656, 668, 1011, 1039
BstNI	CCWGG	6 cut(s)	121, 168, 194, 354, 656, 737
BstNSI	RCATGY	1 cut(s)	527
BstSCI	CCNGG	7 cut(s)	119, 166, 192, 352, 618, 654, 735
BstSFI	CTRYAG	1 cut(s)	843
BstSLI	GKGCMC	2 cut(s)	120, 882
BstV1I	GCAGC	5 cut(s)	139, 218, 526, 646, 688
BstV2I	GAAGAC	1 cut(s)	337
BstXI	CCANNNNNNTGG	1 cut(s)	994
BsuRI	GGCC	4 cut(s)	197, 462, 519, 618
BtgI	CCRYGG	1 cut(s)	71
BtsCI	GGATG	4 cut(s)	42, 970, 1006, 1068
BtsIMutI	CAGTG	1 cut(s)	637
BveI	ACCTGC	1 cut(s)	1024
Cac8I	GCNNGC	2 cut(s)	289, 951
CaiI	CAGNNNCTG	1 cut(s)	133
Cfr10I	RCCGGY	2 cut(s)	287, 782
Cfr13I	GGNCC	5 cut(s)	196, 617, 768, 824, 1069
CseI	GACGC	3 cut(s)	75, 293, 729
Csp6I	GTAC	4 cut(s)	222, 228, 324, 374
CspAI	ACCGGT	1 cut(s)	782
CviAII	CATG	6 cut(s)	241, 419, 458, 503, 524, 1051
CviQI	GTAC	4 cut(s)	222, 228, 324, 374
DdeI	CTNAG	6 cut(s)	299, 870, 883, 894, 934, 1077
DpnI	GATC	6 cut(s)	12, 93, 410, 789, 834, 1107
DpnII	GATC	6 cut(s)	10, 91, 408, 787, 832, 1105
DriI	GACNNNNNGTC	1 cut(s)	739
EaeI	YGGCCR	1 cut(s)	460
Eam1105I	GACNNNNNGTC	1 cut(s)	739
Eco24I	GRGCYC	1 cut(s)	945
Eco47I	GGWCC	3 cut(s)	768, 824, 1069
Eco57I	CTGAAG	1 cut(s)	495
Eco88I	CYCGRG	1 cut(s)	764
EcoO109I	RGGNCCY	1 cut(s)	768
EcoRII	CCWGG	6 cut(s)	119, 166, 192, 352, 654, 735
EcoT38I	GRGCYC	1 cut(s)	945
FaeI	CATG	6 cut(s)	244, 422, 461, 506, 527, 1054
FalI	AAGNNNNNCTT	4 cut(s)	469, 501, 1105, 1137
FaqI	GGGAC	1 cut(s)	754
FatI	CATG	6 cut(s)	240, 418, 457, 502, 523, 1050
FbaI	TGATCA	2 cut(s)	787, 1105
Fnu4HI	GCNGC	5 cut(s)	153, 207, 540, 660, 702
FokI	GGATG	4 cut(s)	29, 957, 1013, 1075
FriOI	GRGCYC	1 cut(s)	945
Fsp4HI	GCNGC	5 cut(s)	153, 207, 540, 660, 702
FspBI	CTAG	1 cut(s)	912
GluI	GCNGC	5 cut(s)	153, 207, 540, 660, 702
GsuI	CTGGAG	1 cut(s)	378
HaeIII	GGCC	4 cut(s)	197, 462, 519, 618
HapII	CCGG	4 cut(s)	288, 533, 620, 783
HgaI	GACGC	3 cut(s)	75, 293, 729
Hin1I	GRCGYC	3 cut(s)	67, 285, 740
Hin1II	CATG	6 cut(s)	244, 422, 461, 506, 527, 1054
HinfI	GANTC	4 cut(s)	635, 640, 887, 898
HpaII	CCGG	4 cut(s)	288, 533, 620, 783
HphI	GGTGA	2 cut(s)	619, 797
Hpy166II	GTNNAC	2 cut(s)	59, 65
Hpy188I	TCNGA	7 cut(s)	129, 302, 413, 514, 886, 1024, 1091
Hpy188III	TCNNGA	6 cut(s)	14, 98, 395, 477, 567, 1134
Hpy8I	GTNNAC	2 cut(s)	59, 65
Hpy99I	CGWCG	1 cut(s)	417
HpyAV	CCTTC	5 cut(s)	305, 509, 1048, 1060, 1131
HpyCH4III	ACNGT	2 cut(s)	667, 1086
HpyCH4IV	ACGT	1 cut(s)	61
HpyCH4V	TGCA	9 cut(s)	4, 542, 603, 650, 662, 949, 977, 1033, 1042
HpyF10VI	GCNNNNNNNGC	8 cut(s)	203, 212, 536, 589, 656, 668, 1011, 1039
HpyF3I	CTNAG	6 cut(s)	299, 870, 883, 894, 934, 1077
HpySE526I	ACGT	1 cut(s)	61
Hsp92I	GRCGYC	3 cut(s)	67, 285, 740
Hsp92II	CATG	6 cut(s)	244, 422, 461, 506, 527, 1054
KflI	GGGWCCC	1 cut(s)	768
KpnI	GGTACC	1 cut(s)	327
KroI	GCCGGC	1 cut(s)	287
KroNI	GCCGGC	1 cut(s)	289
Ksp22I	TGATCA	2 cut(s)	787, 1105
Kzo9I	GATC	6 cut(s)	10, 91, 408, 787, 832, 1105
LmnI	GCTCC	5 cut(s)	180, 370, 397, 535, 709
Lsp1109I	GCAGC	5 cut(s)	139, 218, 526, 646, 688
LweI	GCATC	6 cut(s)	19, 284, 472, 570, 793, 986
MaeI	CTAG	1 cut(s)	912
MaeII	ACGT	1 cut(s)	61
MaeIII	GTNAC	1 cut(s)	914
MalI	GATC	6 cut(s)	12, 93, 410, 789, 834, 1107
MboI	GATC	6 cut(s)	10, 91, 408, 787, 832, 1105
MboII	GAAGA	2 cut(s)	337, 441
MhlI	GDGCHC	4 cut(s)	120, 594, 882, 945
MlsI	TGGCCA	1 cut(s)	462
MluCI	AATT	2 cut(s)	423, 723
MluNI	TGGCCA	1 cut(s)	462
MlyI	GAGTC	1 cut(s)	907
MmeI	TCCRAC	1 cut(s)	436
Mox20I	TGGCCA	1 cut(s)	462
MroNI	GCCGGC	1 cut(s)	287
MroXI	GAANNNNTTC	1 cut(s)	1085
MscI	TGGCCA	1 cut(s)	462
MseI	TTAA	2 cut(s)	498, 552
MslI	CAYNNNNRTG	2 cut(s)	47, 783
Msp20I	TGGCCA	1 cut(s)	462
MspA1I	CMGCKG	1 cut(s)	701
MspI	CCGG	4 cut(s)	288, 533, 620, 783
MspR9I	CCNGG	7 cut(s)	121, 168, 194, 354, 620, 656, 737
Mva1269I	GAATGC	2 cut(s)	109, 154
MvaI	CCWGG	6 cut(s)	121, 168, 194, 354, 656, 737
MwoI	GCNNNNNNNGC	8 cut(s)	203, 212, 536, 589, 656, 668, 1011, 1039
NaeI	GCCGGC	1 cut(s)	289
NciI	CCSGG	1 cut(s)	620
NdeII	GATC	6 cut(s)	10, 91, 408, 787, 832, 1105
NgoMIV	GCCGGC	1 cut(s)	287
NlaIII	CATG	6 cut(s)	244, 422, 461, 506, 527, 1054
NlaIV	GGNNCC	5 cut(s)	325, 393, 531, 769, 770
NspI	RCATGY	1 cut(s)	527
OliI	CACNNNNGTG	1 cut(s)	783
PciI	ACATGT	1 cut(s)	523
PctI	GAATGC	2 cut(s)	109, 154
PdiI	GCCGGC	1 cut(s)	289
PdmI	GAANNNNTTC	1 cut(s)	1085
PfeI	GAWTC	3 cut(s)	635, 640, 887
PflMI	CCANNNNNTGG	2 cut(s)	218, 713
PfoI	TCCNGGA	1 cut(s)	166
PinAI	ACCGGT	1 cut(s)	782
PkrI	GCNGC	5 cut(s)	154, 208, 541, 661, 703
PleI	GAGTC	1 cut(s)	906
PpsI	GAGTC	1 cut(s)	906
PpuMI	RGGWCCY	1 cut(s)	768
PscI	ACATGT	1 cut(s)	523
Psp5II	RGGWCCY	1 cut(s)	768
Psp6I	CCWGG	6 cut(s)	119, 166, 192, 352, 654, 735
PspGI	CCWGG	6 cut(s)	119, 166, 192, 352, 654, 735
PspN4I	GGNNCC	5 cut(s)	325, 393, 531, 769, 770
PspPI	GGNCC	5 cut(s)	196, 617, 768, 824, 1069
PspPPI	RGGWCCY	1 cut(s)	768
PstNI	CAGNNNCTG	1 cut(s)	133
PvuII	CAGCTG	1 cut(s)	701
RsaI	GTAC	4 cut(s)	223, 229, 325, 375
RsaNI	GTAC	4 cut(s)	222, 228, 324, 374
RseI	CAYNNNNRTG	2 cut(s)	47, 783
SaqAI	TTAA	2 cut(s)	498, 552
SatI	GCNGC	5 cut(s)	153, 207, 540, 660, 702
Sau3AI	GATC	6 cut(s)	10, 91, 408, 787, 832, 1105
Sau96I	GGNCC	5 cut(s)	196, 617, 768, 824, 1069
SchI	GAGTC	1 cut(s)	907
ScrFI	CCNGG	7 cut(s)	121, 168, 194, 354, 620, 656, 737
SduI	GDGCHC	4 cut(s)	120, 594, 882, 945
SfaNI	GCATC	6 cut(s)	19, 284, 472, 570, 793, 986
SfcI	CTRYAG	1 cut(s)	843
SgrAI	CRCCGGYG	1 cut(s)	782
SinI	GGWCC	3 cut(s)	768, 824, 1069
SmiMI	CAYNNNNRTG	2 cut(s)	47, 783
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
Sse9I	AATT	2 cut(s)	423, 723
SspMI	CTAG	1 cut(s)	912
StyD4I	CCNGG	7 cut(s)	119, 166, 192, 352, 618, 654, 735
TaaI	ACNGT	2 cut(s)	667, 1086
TaiI	ACGT	1 cut(s)	64
TaqI	TCGA	6 cut(s)	556, 594, 638, 677, 710, 939
TasI	AATT	2 cut(s)	423, 723
TatI	WGTACW	1 cut(s)	227
TfiI	GAWTC	3 cut(s)	635, 640, 887
Tru1I	TTAA	2 cut(s)	498, 552
Tru9I	TTAA	2 cut(s)	498, 552
TscAI	CASTG	1 cut(s)	637
TseI	GCWGC	5 cut(s)	152, 206, 539, 659, 701
TspDTI	ATGAA	4 cut(s)	435, 446, 1067, 1079
TspGWI	ACGGA	2 cut(s)	88, 201
TspRI	CASTG	1 cut(s)	637
Van91I	CCANNNNNTGG	2 cut(s)	218, 713
VpaK11BI	GGWCC	3 cut(s)	768, 824, 1069
XceI	RCATGY	1 cut(s)	527
XmnI	GAANNNNTTC	1 cut(s)	1085
XspI	CTAG	1 cut(s)	912

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.