Prupe.4G212100_v2.0.a1

DNA binding domain with preference for A/T rich regions

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
13225392 .. 13230149
4758 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G212100.4

Sequence Viewer

Length: 1272 bp
ATGAGCCAAGCTGATCAAGGGAACAACCCTGATGCCTCGTCAAACATCCATATGAAGCGCAAACGTGGCCGTCCACGGAAATATCCAAAACTAAATCTGGAAGAGGATACTCGTGTGCCAAATGCTCAGAATCTGAACCCACGTGTGAATGCTGGTATTGGTATTCCTCCTGTTCCTCCTGGATTTGATGGGAGGAACGAATACCAGTCCCATCATGCAGCTCCAAATAATAGTACAACTGATGTCATGGTGGGAACAATAGTTTCCGGTGTCATTGATGGAGCTTTTGATGGAGGATATTTACTTAGTGTCAGGGTTGGCAACTCTCACACCACTTTGAGGGGCGTTGTCTTCAAGCCTGGACGTTACACTTCTGTCTCAGCAGAGAATGATGTGGCCCCAGATGTTCAAATGATCAGGAGAAATGCAATTCCCATTCCAGGTGAGATTTACTCTCATGTCCATGGTCAGAAATCTCGTTCTAGAGATGTCATCCGCTCTGTTCATCACGTGGCTTCAAAAGGCAAACATGTGCCCCCTGTGGCAGCCCAAACTGTTAATCCACTATTGTCCAGAGGAAACTTGTTGCCTGTTATACTGCAACCTCGTAATTTATCTAATGGGGTACCACTCACCGGTTCATCTACTTCTGTTGCTCCAGTTGCTCCTCCGAAAAATGGGTCGATACCCACTAACCAGGTGCCACTCAACAGTGAGCCAACTTCTGCCGCACCCCAAGCTGCAGATCTGGCAACTTCAAGAGTTAAACAGGTTCCATCAGTTCCTCCATCAAATGGGTCGATACCCTCCAACCAGATGCCAATAGTTGGAAATCAGTCTTCAGTGTTCGAAGGTGAGCAAAATGATGATGGTACGTGTAATCAACCATCAACAGAGACGCTAATTCAGGAAGAAGCCAAATCAATGAGACGCCCAGATATACCTTTTGAAAAATTGGTTACTGAGGTAGTTAAAAGGATAGATAACCCCTCACAAGCCACCTTACAATCAACTGATATTCACATTGAGGGTAGCAAGTCAACTGGCAATGAGATGGAGAACGATATGGATCAACCCCTAGTAATTGAGCCTCTGCAAGCCATACAGCCGAAAGGCCACTCTACACCAGTTTCAAAACCACTGGAGGACAGTAGAAATGGCAAAATGTCTGAGCTGTTGCAGGTTTTGCAGGAAAGCATGAGGGAGAGGGAGGAGCCACAGGCTGAAGTGTCAACCACAGGTCCCAGACAGAACTTGGATGAACCAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

424

Amino Acids

45.58

Weight (kDa)

6.43

Isoelectric Point (pI)

54.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1171
Acc65I GGTACC 1 cut(s) 625
AccB1I GGYRCC 2 cut(s) 625, 700
AccB7I CCANNNNNTGG 2 cut(s) 794, 827
AccBSI CCGCTC 1 cut(s) 498
AciI CCGC 2 cut(s) 496, 729
AclWI GGATC 1 cut(s) 1077
AcoI YGGCCR 1 cut(s) 67
AcuI CTGAAG 2 cut(s) 825, 1245
AcvI CACGTG 2 cut(s) 143, 511
AcyI GRCGYC 1 cut(s) 931
AfaI GTAC 3 cut(s) 235, 627, 874
AfiI CCNNNNNNNGG 6 cut(s) 339, 440, 635, 677, 794, 827
AflIII ACRYGT 3 cut(s) 142, 529, 875
AgeI ACCGGT 1 cut(s) 635
AgsI TTSAA 6 cut(s) 355, 410, 519, 759, 950, 1134
AjnI CCWGG 4 cut(s) 178, 358, 439, 696
AluBI AGCT 5 cut(s) 11, 221, 284, 740, 1174
AluI AGCT 5 cut(s) 11, 221, 284, 740, 1174
Alw26I GTCTC 3 cut(s) 382, 890, 922
AlwI GGATC 1 cut(s) 1077
AlwNI CAGNNNCTG 1 cut(s) 133
AoxI GGCC 3 cut(s) 67, 396, 1114
ApeKI GCWGC 3 cut(s) 218, 545, 740
ArsI GACNNNNNNTTYG 2 cut(s) 665, 697
AsiGI ACCGGT 1 cut(s) 635
Asp718I GGTACC 1 cut(s) 625
AspLEI GCGC 1 cut(s) 60
AspS9I GGNCC 2 cut(s) 397, 1241
AsuHPI GGTGA 3 cut(s) 455, 625, 866
AsuII TTCGAA 1 cut(s) 849
AvaII GGWCC 1 cut(s) 1241
BaeGI GKGCMC 1 cut(s) 537
BaeI ACNNNNGTAYC 2 cut(s) 99, 132
BanI GGYRCC 2 cut(s) 625, 700
BauI CACGAG 1 cut(s) 111
BbrPI CACGTG 2 cut(s) 143, 511
BbsI GAAGAC 2 cut(s) 343, 831
BbvI GCAGC 3 cut(s) 230, 557, 727
BccI CCATC 9 cut(s) 182, 219, 272, 284, 784, 796, 863, 895, 1048
BceAI ACGGC 1 cut(s) 54
BciT130I CCWGG 4 cut(s) 180, 360, 441, 698
BciVI GTATCC 1 cut(s) 100
BclI TGATCA 2 cut(s) 13, 414
BcoDI GTCTC 3 cut(s) 382, 890, 922
BfaI CTAG 2 cut(s) 483, 1079
BfmI CTRYAG 1 cut(s) 741
BfuAI ACCTGC 1 cut(s) 1171
BfuI GTATCC 1 cut(s) 100
BglII AGATCT 1 cut(s) 745
BisI GCNGC 4 cut(s) 219, 546, 729, 741
BlsI GCNGC 4 cut(s) 220, 547, 730, 742
Bme1390I CCNGG 4 cut(s) 180, 360, 441, 698
Bme18I GGWCC 1 cut(s) 1241
BmgT120I GGNCC 2 cut(s) 397, 1241
BmiI GGNNCC 6 cut(s) 399, 627, 702, 774, 1215, 1243
BmrFI CCNGG 4 cut(s) 180, 360, 441, 698
BmsI GCATC 2 cut(s) 22, 807
BpiI GAAGAC 2 cut(s) 343, 831
BplI GAGNNNNNCTC 2 cut(s) 437, 469
BpmI CTGGAG 2 cut(s) 642, 1163
Bpu14I TTCGAA 1 cut(s) 849
BsaAI YACGTR 3 cut(s) 143, 511, 876
BsaBI GATNNNNATC 1 cut(s) 1068
BsaHI GRCGYC 1 cut(s) 931
BsaJI CCNNGG 2 cut(s) 74, 463
BsaWI WCCGGW 2 cut(s) 266, 635
Bsc4I CCNNNNNNNGG 6 cut(s) 339, 440, 635, 677, 794, 827
Bse118I RCCGGY 1 cut(s) 635
Bse1I ACTGG 5 cut(s) 205, 659, 1048, 1127, 1146
Bse3DI GCAATG 1 cut(s) 1054
Bse8I GATNNNNATC 1 cut(s) 1068
BseBI CCWGG 4 cut(s) 180, 360, 441, 698
BseDI CCNNGG 2 cut(s) 74, 463
BseGI GGATG 3 cut(s) 45, 492, 1264
BseJI GATNNNNATC 1 cut(s) 1068
BseLI CCNNNNNNNGG 6 cut(s) 339, 440, 635, 677, 794, 827
BseMI GCAATG 1 cut(s) 1054
BseMII CTCAG 4 cut(s) 140, 393, 954, 1161
BseNI ACTGG 5 cut(s) 205, 659, 1048, 1127, 1146
BseRI GAGGAG 2 cut(s) 657, 1226
BseSI GKGCMC 1 cut(s) 537
BseXI GCAGC 3 cut(s) 230, 557, 727
BshFI GGCC 3 cut(s) 69, 398, 1116
BshNI GGYRCC 2 cut(s) 625, 700
BshTI ACCGGT 1 cut(s) 635
BsiSI CCGG 2 cut(s) 267, 636
BslFI GGGAC 2 cut(s) 193, 1227
BslI CCNNNNNNNGG 6 cut(s) 339, 440, 635, 677, 794, 827
BsmAI GTCTC 3 cut(s) 382, 890, 922
BsmBI CGTCTC 2 cut(s) 890, 922
BsmFI GGGAC 2 cut(s) 193, 1227
BsmI GAATGC 1 cut(s) 154
BsnI GGCC 3 cut(s) 69, 398, 1116
Bsp119I TTCGAA 1 cut(s) 849
Bsp1286I GDGCHC 1 cut(s) 537
Bsp143I GATC 4 cut(s) 13, 414, 745, 1069
Bsp19I CCATGG 1 cut(s) 463
BspACI CCGC 2 cut(s) 496, 729
BspANI GGCC 3 cut(s) 69, 398, 1116
BspCNI CTCAG 4 cut(s) 139, 392, 955, 1162
BspLI GGNNCC 6 cut(s) 399, 627, 702, 774, 1215, 1243
BspMAI CTGCAG 1 cut(s) 745
BspMI ACCTGC 1 cut(s) 1171
BspPI GGATC 1 cut(s) 1077
BspT104I TTCGAA 1 cut(s) 849
BspT107I GGYRCC 2 cut(s) 625, 700
BsrBI CCGCTC 1 cut(s) 498
BsrDI GCAATG 1 cut(s) 1054
BsrFI RCCGGY 1 cut(s) 635
BsrI ACTGG 5 cut(s) 205, 659, 1048, 1127, 1146
BssAI RCCGGY 1 cut(s) 635
BssECI CCNNGG 2 cut(s) 74, 463
BssMI GATC 4 cut(s) 13, 414, 745, 1069
BssNI GRCGYC 1 cut(s) 931
BssSI CACGAG 1 cut(s) 111
BssT1I CCWWGG 1 cut(s) 463
Bst2BI CACGAG 1 cut(s) 111
Bst2UI CCWGG 4 cut(s) 180, 360, 441, 698
Bst4CI ACNGT 3 cut(s) 556, 713, 1151
Bst6I CTCTTC 1 cut(s) 96
BstACI GRCGYC 1 cut(s) 931
BstAPI GCANNNNNTGC 1 cut(s) 1186
BstBAI YACGTR 3 cut(s) 143, 511, 876
BstBI TTCGAA 1 cut(s) 849
BstC8I GCNNGC 1 cut(s) 1098
BstDEI CTNAG 5 cut(s) 126, 305, 379, 963, 1170
BstDSI CCRYGG 2 cut(s) 74, 463
BstF5I GGATG 3 cut(s) 45, 492, 1264
BstHHI GCGC 1 cut(s) 60
BstKTI GATC 4 cut(s) 16, 417, 748, 1072
BstMAI GTCTC 3 cut(s) 382, 890, 922
BstMBI GATC 4 cut(s) 13, 414, 745, 1069
BstMWI GCNNNNNNNGC 5 cut(s) 66, 662, 737, 749, 1186
BstNI CCWGG 4 cut(s) 180, 360, 441, 698
BstNSI RCATGY 1 cut(s) 533
BstSCI CCNGG 4 cut(s) 178, 358, 439, 696
BstSFI CTRYAG 1 cut(s) 741
BstSLI GKGCMC 1 cut(s) 537
BstV1I GCAGC 3 cut(s) 230, 557, 727
BstV2I GAAGAC 2 cut(s) 343, 831
BstX2I RGATCY 1 cut(s) 745
BstYI RGATCY 1 cut(s) 745
BsuI GTATCC 1 cut(s) 100
BsuRI GGCC 3 cut(s) 69, 398, 1116
BtgI CCRYGG 2 cut(s) 74, 463
BtsCI GGATG 3 cut(s) 45, 492, 1264
BtsIMutI CAGTG 3 cut(s) 718, 849, 1139
BveI ACCTGC 1 cut(s) 1171
Cac8I GCNNGC 1 cut(s) 1098
CaiI CAGNNNCTG 1 cut(s) 133
CfoI GCGC 1 cut(s) 60
Cfr10I RCCGGY 1 cut(s) 635
Cfr13I GGNCC 2 cut(s) 397, 1241
CseI GACGC 2 cut(s) 907, 939
CsiI ACCWGGT 1 cut(s) 696
Csp6I GTAC 3 cut(s) 234, 626, 873
CspAI ACCGGT 1 cut(s) 635
CviAII CATG 6 cut(s) 215, 247, 458, 464, 530, 1198
CviQI GTAC 3 cut(s) 234, 626, 873
DdeI CTNAG 5 cut(s) 126, 305, 379, 963, 1170
DpnI GATC 4 cut(s) 15, 416, 747, 1071
DpnII GATC 4 cut(s) 13, 414, 745, 1069
EaeI YGGCCR 1 cut(s) 67
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Eco130I CCWWGG 1 cut(s) 463
Eco47I GGWCC 1 cut(s) 1241
Eco57I CTGAAG 2 cut(s) 825, 1245
Eco72I CACGTG 2 cut(s) 143, 511
EcoO109I RGGNCCY 1 cut(s) 1241
EcoRII CCWGG 4 cut(s) 178, 358, 439, 696
EcoT14I CCWWGG 1 cut(s) 463
ErhI CCWWGG 1 cut(s) 463
Esp3I CGTCTC 2 cut(s) 890, 922
FaeI CATG 6 cut(s) 218, 250, 461, 467, 533, 1201
FaqI GGGAC 2 cut(s) 193, 1227
FatI CATG 6 cut(s) 214, 246, 457, 463, 529, 1197
FauNDI CATATG 1 cut(s) 51
FbaI TGATCA 2 cut(s) 13, 414
Fnu4HI GCNGC 4 cut(s) 219, 546, 729, 741
FokI GGATG 2 cut(s) 32, 479
Fsp4HI GCNGC 4 cut(s) 219, 546, 729, 741
FspBI CTAG 2 cut(s) 483, 1079
GlaI GCGC 1 cut(s) 59
GluI GCNGC 4 cut(s) 219, 546, 729, 741
GsuI CTGGAG 2 cut(s) 642, 1163
HaeIII GGCC 3 cut(s) 69, 398, 1116
HapII CCGG 2 cut(s) 267, 636
HgaI GACGC 2 cut(s) 907, 939
HhaI GCGC 1 cut(s) 60
Hin1I GRCGYC 1 cut(s) 931
Hin1II CATG 6 cut(s) 218, 250, 461, 467, 533, 1201
Hin6I GCGC 1 cut(s) 58
HinP1I GCGC 1 cut(s) 58
HincII GTYRAC 2 cut(s) 1041, 1233
HindII GTYRAC 2 cut(s) 1041, 1233
HinfI GANTC 1 cut(s) 130
HpaII CCGG 2 cut(s) 267, 636
HphI GGTGA 3 cut(s) 455, 625, 866
Hpy166II GTNNAC 3 cut(s) 74, 1041, 1233
Hpy188I TCNGA 5 cut(s) 129, 135, 471, 672, 1171
Hpy188III TCNNGA 6 cut(s) 98, 418, 483, 573, 759, 908
Hpy8I GTNNAC 3 cut(s) 74, 1041, 1233
HpyAV CCTTC 1 cut(s) 845
HpyCH4III ACNGT 3 cut(s) 556, 713, 1151
HpyCH4IV ACGT 5 cut(s) 64, 142, 364, 510, 875
HpyCH4V TGCA 7 cut(s) 218, 428, 601, 743, 1096, 1180, 1189
HpyF10VI GCNNNNNNNGC 5 cut(s) 66, 662, 737, 749, 1186
HpyF3I CTNAG 5 cut(s) 126, 305, 379, 963, 1170
HpySE526I ACGT 5 cut(s) 64, 142, 364, 510, 875
Hsp92I GRCGYC 1 cut(s) 931
Hsp92II CATG 6 cut(s) 218, 250, 461, 467, 533, 1201
HspAI GCGC 1 cut(s) 58
KpnI GGTACC 1 cut(s) 629
Ksp22I TGATCA 2 cut(s) 13, 414
Kzo9I GATC 4 cut(s) 13, 414, 745, 1069
LmnI GCTCC 5 cut(s) 226, 281, 661, 670, 1213
Lsp1109I GCAGC 3 cut(s) 230, 557, 727
LweI GCATC 2 cut(s) 22, 807
MabI ACCWGGT 1 cut(s) 696
MaeI CTAG 2 cut(s) 483, 1079
MaeII ACGT 5 cut(s) 64, 142, 364, 510, 875
MaeIII GTNAC 2 cut(s) 365, 958
MalI GATC 4 cut(s) 15, 416, 747, 1071
MbiI CCGCTC 1 cut(s) 498
MboI GATC 4 cut(s) 13, 414, 745, 1069
MboII GAAGA 4 cut(s) 113, 343, 831, 923
MflI RGATCY 1 cut(s) 745
MhlI GDGCHC 1 cut(s) 537
MluCI AATT 5 cut(s) 429, 610, 903, 953, 1083
MmeI TCCRAC 2 cut(s) 808, 834
MseI TTAA 4 cut(s) 558, 765, 972, 1270
MslI CAYNNNNRTG 2 cut(s) 50, 462
MspI CCGG 2 cut(s) 267, 636
MspR9I CCNGG 4 cut(s) 180, 360, 441, 698
Mva1269I GAATGC 1 cut(s) 154
MvaI CCWGG 4 cut(s) 180, 360, 441, 698
MwoI GCNNNNNNNGC 5 cut(s) 66, 662, 737, 749, 1186
NcoI CCATGG 1 cut(s) 463
NdeI CATATG 1 cut(s) 51
NdeII GATC 4 cut(s) 13, 414, 745, 1069
NlaIII CATG 6 cut(s) 218, 250, 461, 467, 533, 1201
NlaIV GGNNCC 6 cut(s) 399, 627, 702, 774, 1215, 1243
NspI RCATGY 1 cut(s) 533
NspV TTCGAA 1 cut(s) 849
PciI ACATGT 1 cut(s) 529
PctI GAATGC 1 cut(s) 154
PfeI GAWTC 1 cut(s) 130
PflMI CCANNNNNTGG 2 cut(s) 794, 827
PfoI TCCNGGA 1 cut(s) 178
PinAI ACCGGT 1 cut(s) 635
PkrI GCNGC 4 cut(s) 220, 547, 730, 742
PmaCI CACGTG 2 cut(s) 143, 511
PmlI CACGTG 2 cut(s) 143, 511
Ppu21I YACGTR 3 cut(s) 143, 511, 876
PpuMI RGGWCCY 1 cut(s) 1241
PscI ACATGT 1 cut(s) 529
Psp5II RGGWCCY 1 cut(s) 1241
Psp6I CCWGG 4 cut(s) 178, 358, 439, 696
PspCI CACGTG 2 cut(s) 143, 511
PspGI CCWGG 4 cut(s) 178, 358, 439, 696
PspN4I GGNNCC 6 cut(s) 399, 627, 702, 774, 1215, 1243
PspPI GGNCC 2 cut(s) 397, 1241
PspPPI RGGWCCY 1 cut(s) 1241
PstI CTGCAG 1 cut(s) 745
PstNI CAGNNNCTG 1 cut(s) 133
PsuI RGATCY 1 cut(s) 745
RsaI GTAC 3 cut(s) 235, 627, 874
RsaNI GTAC 3 cut(s) 234, 626, 873
RseI CAYNNNNRTG 2 cut(s) 50, 462
SaqAI TTAA 4 cut(s) 558, 765, 972, 1270
SatI GCNGC 4 cut(s) 219, 546, 729, 741
Sau3AI GATC 4 cut(s) 13, 414, 745, 1069
Sau96I GGNCC 2 cut(s) 397, 1241
ScrFI CCNGG 4 cut(s) 180, 360, 441, 698
SduI GDGCHC 1 cut(s) 537
SexAI ACCWGGT 1 cut(s) 696
SfaNI GCATC 2 cut(s) 22, 807
SfcI CTRYAG 1 cut(s) 741
SfuI TTCGAA 1 cut(s) 849
SinI GGWCC 1 cut(s) 1241
SmiMI CAYNNNNRTG 2 cut(s) 50, 462
Sse9I AATT 5 cut(s) 429, 610, 903, 953, 1083
SsiI CCGC 2 cut(s) 496, 729
SspMI CTAG 2 cut(s) 483, 1079
StyD4I CCNGG 4 cut(s) 178, 358, 439, 696
StyI CCWWGG 1 cut(s) 463
TaaI ACNGT 3 cut(s) 556, 713, 1151
TaiI ACGT 5 cut(s) 67, 145, 367, 513, 878
TaqI TCGA 3 cut(s) 683, 800, 849
TasI AATT 5 cut(s) 429, 610, 903, 953, 1083
TatI WGTACW 1 cut(s) 233
TauI GCSGC 1 cut(s) 731
TfiI GAWTC 1 cut(s) 130
Tru1I TTAA 4 cut(s) 558, 765, 972, 1270
Tru9I TTAA 4 cut(s) 558, 765, 972, 1270
TscAI CASTG 3 cut(s) 718, 849, 1146
TseI GCWGC 3 cut(s) 218, 545, 740
TspDTI ATGAA 3 cut(s) 68, 494, 630
TspGWI ACGGA 1 cut(s) 91
TspRI CASTG 3 cut(s) 718, 849, 1146
Van91I CCANNNNNTGG 2 cut(s) 794, 827
VpaK11BI GGWCC 1 cut(s) 1241
XbaI TCTAGA 1 cut(s) 482
XceI RCATGY 1 cut(s) 533
XcmI CCANNNNNNNNNTGG 1 cut(s) 1252
XspI CTAG 2 cut(s) 483, 1079
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.