Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006724

Physical Location & Seq

Genomic Coordinates Reverse (-)

33980306 .. 33981562

Gene Structure 1257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033904

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGCAAGGAGATCAAGAAAACATTGCTGATGCCTTATCAAACATCCCTGTGAAGCGTAAACGTGGACGCCCACGGAAATATCCAAGACTTGATCCTCAAGAGAATGCTGCTCCTGTGCCCAGGTATCAGAACCTGAACTTGGGTGAGAATGCTGCTGTTCCCCCTCCTGGATTTGTAAGGAGCAACGGAAACCAGGCCCAACAAGCAGCACCAACTAATGGTACAAATACAACTGATAACATGGTGGGAATGGTTGTTTCTGGTGTTGTTGAAGCATCATTTGACGCCGGCTACCTTCTCAGAGTTAGGGTTGGTAATACTGGTACCACTTTGAGGGGTGTTGTCTTCAAGCCTGGACATTACGCTCCTGTTGTACCAGAAAATGATGTGGCTCCAGATGTTGAAATGATCCGACGGCATGAAACTGCCCTCCCAGTTGAAAACCATTCTTCTGTTCATGGCCATAAACCTCATTCAAGAGATGCTTCGCACCCCGTTAATCATGTGGCTTCAGAAGGCCGACATGTGGCTCCGGTGGCTGCACAAAATGTTAATCGAGTAATGTCCAGAGGCAACTTGATGCCTGTTGTGCTCGAACCTTGCAAGGTATCAAATGGGCCGGCACTCACCAGTGAATCGAATCCCGTTGCAACCCAGGATGCAACCGTAGCAACCTCGAAAGGGAAACAGGTTGTATCAGTTGCTCCATCGAATGGGTGTTCAATTCCCAACGACCAGGCGTCAGCAGTTCAAAATCAAATGCTCGGGTCCCAACCTCACACCGGCCATCAGGTAATGTATGATGCTAAAATAAATGAGAATGGCCCTACTGATCCACCCTCTGTAGAGGAGCTGCGTAAGACAGAAGCCAAGCAAATGACATTGCCTGAGAATGTGCCCTCAGAATCAACTGAGAGTCACGTAGAGGCTAGTAACTTGGCTACTCAACCCTTAGTGGAGCCCCTGCAAGCAGTAGAGCATAAAGACCATCCTGCATCTGCTTCCAAACCAATGGAGGATGGCAGAAATGGCAAAATGTCCGAGCTATTGCAGGAAAGCATGAAGGAGAGGATGAAGGACCAAACTGAGAAACTGTTCGGAGATGGACAAAATGATCATTCAAGCACACCTTCACAGGCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

382

Amino Acids

40.88

Weight (kDa)

6.11

Isoelectric Point (pI)

49.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54930 AT5G54930
fragaria_vesca	FvH4_3g22550 FvH4_3g22550 FvH4_3g22550
malus_domestica	MD03G1202000.v1.1 MD11G1219200.v1.1
prunus_persica	Prupe.4G212100_v2.0.a1 Prupe.4G212100_v2.0.a1 Prupe.4G212100_v2.0.a1 Prupe.4G212100_v2.0.a1
pyrus_communis	pycom03g15330 pycom11g19310
rosa_chinensis	RchiOBHm_Chr5g0039291
rosa_laevigata	RLG00000033904
rosa_multiflora	Rmu_ssc0000410.1_g000050
rosa_roxburghii	Rroxscaffold_1G00040490 Rroxscaffold_1G00041850
rosa_rugosa	Rorug05G0177800 Rorug05G0177900 Rorug05G0178000
rosa_samantha	Rh5AG264200 Rh5BG269300 Rh5CG302200 Rh5DG276900
rosa_wichuraiana	Rw5G024780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	323
AccB1I	GGYRCC	1 cut(s)	323
AccB7I	CCANNNNNTGG	2 cut(s)	218, 713
AclWI	GGATC	3 cut(s)	86, 403, 827
AcoI	YGGCCR	2 cut(s)	460, 784
AcuI	CTGAAG	1 cut(s)	495
AcyI	GRCGYC	3 cut(s)	67, 285, 740
AfaI	GTAC	3 cut(s)	223, 325, 375
AfiI	CCNNNNNNNGG	8 cut(s)	139, 167, 218, 333, 526, 681, 713, 782
AflIII	ACRYGT	1 cut(s)	523
AgsI	TTSAA	8 cut(s)	272, 349, 404, 440, 477, 723, 752, 1122
AhdI	GACNNNNNGTC	1 cut(s)	739
AjnI	CCWGG	6 cut(s)	119, 166, 192, 352, 654, 735
AjuI	GAANNNNNNNTTGG	2 cut(s)	122, 154
AluBI	AGCT	2 cut(s)	853, 1045
AluI	AGCT	2 cut(s)	853, 1045
Alw21I	GWGCWC	1 cut(s)	594
AlwI	GGATC	3 cut(s)	86, 403, 827
AlwNI	CAGNNNCTG	1 cut(s)	133
Ama87I	CYCGRG	1 cut(s)	764
AoxI	GGCC	6 cut(s)	195, 460, 517, 617, 784, 823
ApeKI	GCWGC	5 cut(s)	107, 152, 206, 539, 853
Asp700I	GAANNNNTTC	1 cut(s)	1094
Asp718I	GGTACC	1 cut(s)	323
AspS9I	GGNCC	5 cut(s)	196, 617, 768, 824, 1078
AsuHPI	GGTGA	2 cut(s)	155, 619
AvaI	CYCGRG	1 cut(s)	764
AvaII	GGWCC	2 cut(s)	768, 1078
BaeGI	GKGCMC	2 cut(s)	120, 900
BalI	TGGCCA	1 cut(s)	462
BanI	GGYRCC	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	963
BbsI	GAAGAC	1 cut(s)	337
Bbv12I	GWGCWC	1 cut(s)	594
BbvI	GCAGC	5 cut(s)	94, 139, 218, 526, 840
BccI	CCATC	5 cut(s)	715, 795, 996, 1013, 1097
BceAI	ACGGC	1 cut(s)	431
BciT130I	CCWGG	6 cut(s)	121, 168, 194, 354, 656, 737
BclI	TGATCA	1 cut(s)	1114
BfaI	CTAG	1 cut(s)	930
BfmI	CTRYAG	1 cut(s)	843
BisI	GCNGC	5 cut(s)	108, 153, 207, 540, 854
BlsI	GCNGC	5 cut(s)	109, 154, 208, 541, 855
Bme1390I	CCNGG	6 cut(s)	121, 168, 194, 354, 656, 737
Bme18I	GGWCC	2 cut(s)	768, 1078
BmeRI	GACNNNNNGTC	1 cut(s)	739
BmeT110I	CYCGRG	1 cut(s)	764
BmgT120I	GGNCC	5 cut(s)	196, 617, 768, 824, 1078
BmiI	GGNNCC	6 cut(s)	325, 393, 531, 769, 770, 960
BmrFI	CCNGG	6 cut(s)	121, 168, 194, 354, 656, 737
BmrI	ACTGGG	1 cut(s)	428
BmsI	GCATC	7 cut(s)	19, 284, 472, 570, 649, 793, 1004
BmuI	ACTGGG	1 cut(s)	428
BpiI	GAAGAC	1 cut(s)	337
BpmI	CTGGAG	1 cut(s)	378
BpuEI	CTTGAG	1 cut(s)	81
BsaAI	YACGTR	1 cut(s)	922
BsaHI	GRCGYC	3 cut(s)	67, 285, 740
BsaJI	CCNNGG	3 cut(s)	71, 119, 654
BsaWI	WCCGGW	1 cut(s)	532
Bsc4I	CCNNNNNNNGG	8 cut(s)	139, 167, 218, 333, 526, 681, 713, 782
Bse118I	RCCGGY	3 cut(s)	287, 619, 782
Bse1I	ACTGG	3 cut(s)	325, 434, 630
Bse3DI	GCAATG	2 cut(s)	21, 881
BseBI	CCWGG	6 cut(s)	121, 168, 194, 354, 656, 737
BseDI	CCNNGG	3 cut(s)	71, 119, 654
BseGI	GGATG	5 cut(s)	42, 664, 988, 1024, 1077
BseLI	CCNNNNNNNGG	8 cut(s)	139, 167, 218, 333, 526, 681, 713, 782
BseMI	GCAATG	2 cut(s)	21, 881
BseMII	CTCAG	5 cut(s)	313, 879, 903, 915, 1077
BseNI	ACTGG	3 cut(s)	325, 434, 630
BseRI	GAGGAG	1 cut(s)	863
BseSI	GKGCMC	2 cut(s)	120, 900
BseXI	GCAGC	5 cut(s)	94, 139, 218, 526, 840
BsgI	GTGCAG	1 cut(s)	525
BshFI	GGCC	6 cut(s)	197, 462, 519, 619, 786, 825
BshNI	GGYRCC	1 cut(s)	323
BsiHKAI	GWGCWC	1 cut(s)	594
BsiHKCI	CYCGRG	1 cut(s)	764
BsiSI	CCGG	4 cut(s)	288, 533, 620, 783
BslFI	GGGAC	1 cut(s)	754
BslI	CCNNNNNNNGG	8 cut(s)	139, 167, 218, 333, 526, 681, 713, 782
BsmFI	GGGAC	1 cut(s)	754
BsmI	GAATGC	2 cut(s)	109, 154
BsnI	GGCC	6 cut(s)	197, 462, 519, 619, 786, 825
BsoBI	CYCGRG	1 cut(s)	764
Bsp1286I	GDGCHC	4 cut(s)	120, 594, 900, 963
Bsp143I	GATC	5 cut(s)	10, 91, 408, 832, 1114
BspANI	GGCC	6 cut(s)	197, 462, 519, 619, 786, 825
BspCNI	CTCAG	5 cut(s)	312, 880, 904, 914, 1078
BspLI	GGNNCC	6 cut(s)	325, 393, 531, 769, 770, 960
BspPI	GGATC	3 cut(s)	86, 403, 827
BspT107I	GGYRCC	1 cut(s)	323
BsrDI	GCAATG	2 cut(s)	21, 881
BsrFI	RCCGGY	3 cut(s)	287, 619, 782
BsrI	ACTGG	3 cut(s)	325, 434, 630
BssAI	RCCGGY	3 cut(s)	287, 619, 782
BssECI	CCNNGG	3 cut(s)	71, 119, 654
BssMI	GATC	5 cut(s)	10, 91, 408, 832, 1114
BssNI	GRCGYC	3 cut(s)	67, 285, 740
Bst2UI	CCWGG	6 cut(s)	121, 168, 194, 354, 656, 737
Bst4CI	ACNGT	2 cut(s)	667, 1095
BstACI	GRCGYC	3 cut(s)	67, 285, 740
BstBAI	YACGTR	1 cut(s)	922
BstC8I	GCNNGC	3 cut(s)	289, 621, 969
BstDEI	CTNAG	6 cut(s)	299, 888, 901, 912, 952, 1086
BstDSI	CCRYGG	1 cut(s)	71
BstF5I	GGATG	5 cut(s)	42, 664, 988, 1024, 1077
BstKTI	GATC	5 cut(s)	13, 94, 411, 835, 1117
BstMBI	GATC	5 cut(s)	10, 91, 408, 832, 1114
BstMWI	GCNNNNNNNGC	5 cut(s)	203, 536, 589, 668, 1029
BstNI	CCWGG	6 cut(s)	121, 168, 194, 354, 656, 737
BstNSI	RCATGY	1 cut(s)	527
BstSCI	CCNGG	6 cut(s)	119, 166, 192, 352, 654, 735
BstSFI	CTRYAG	1 cut(s)	843
BstSLI	GKGCMC	2 cut(s)	120, 900
BstV1I	GCAGC	5 cut(s)	94, 139, 218, 526, 840
BstV2I	GAAGAC	1 cut(s)	337
BstXI	CCANNNNNNTGG	1 cut(s)	1012
BsuRI	GGCC	6 cut(s)	197, 462, 519, 619, 786, 825
BtgI	CCRYGG	1 cut(s)	71
BtsCI	GGATG	5 cut(s)	42, 664, 988, 1024, 1077
BtsIMutI	CAGTG	1 cut(s)	637
Cac8I	GCNNGC	3 cut(s)	289, 621, 969
CaiI	CAGNNNCTG	1 cut(s)	133
Cfr10I	RCCGGY	3 cut(s)	287, 619, 782
Cfr13I	GGNCC	5 cut(s)	196, 617, 768, 824, 1078
CseI	GACGC	3 cut(s)	75, 293, 729
Csp6I	GTAC	3 cut(s)	222, 324, 374
CviAII	CATG	6 cut(s)	241, 419, 458, 503, 524, 1060
CviQI	GTAC	3 cut(s)	222, 324, 374
DdeI	CTNAG	6 cut(s)	299, 888, 901, 912, 952, 1086
DpnI	GATC	5 cut(s)	12, 93, 410, 834, 1116
DpnII	GATC	5 cut(s)	10, 91, 408, 832, 1114
DriI	GACNNNNNGTC	1 cut(s)	739
EaeI	YGGCCR	2 cut(s)	460, 784
Eam1105I	GACNNNNNGTC	1 cut(s)	739
Eco24I	GRGCYC	1 cut(s)	963
Eco47I	GGWCC	2 cut(s)	768, 1078
Eco57I	CTGAAG	1 cut(s)	495
Eco88I	CYCGRG	1 cut(s)	764
EcoO109I	RGGNCCY	1 cut(s)	768
EcoRII	CCWGG	6 cut(s)	119, 166, 192, 352, 654, 735
EcoT38I	GRGCYC	1 cut(s)	963
FaeI	CATG	6 cut(s)	244, 422, 461, 506, 527, 1063
FaiI	YATR	9 cut(s)	242, 420, 459, 465, 504, 525, 801, 981, 1061
FalI	AAGNNNNNCTT	4 cut(s)	469, 501, 1114, 1146
FaqI	GGGAC	1 cut(s)	754
FatI	CATG	6 cut(s)	240, 418, 457, 502, 523, 1059
FbaI	TGATCA	1 cut(s)	1114
Fnu4HI	GCNGC	5 cut(s)	108, 153, 207, 540, 854
FokI	GGATG	5 cut(s)	29, 671, 975, 1031, 1084
FriOI	GRGCYC	1 cut(s)	963
Fsp4HI	GCNGC	5 cut(s)	108, 153, 207, 540, 854
FspBI	CTAG	1 cut(s)	930
GluI	GCNGC	5 cut(s)	108, 153, 207, 540, 854
GsuI	CTGGAG	1 cut(s)	378
HaeIII	GGCC	6 cut(s)	197, 462, 519, 619, 786, 825
HapII	CCGG	4 cut(s)	288, 533, 620, 783
HgaI	GACGC	3 cut(s)	75, 293, 729
Hin1I	GRCGYC	3 cut(s)	67, 285, 740
Hin1II	CATG	6 cut(s)	244, 422, 461, 506, 527, 1063
HinfI	GANTC	4 cut(s)	635, 640, 905, 916
HpaII	CCGG	4 cut(s)	288, 533, 620, 783
HphI	GGTGA	2 cut(s)	155, 619
Hpy166II	GTNNAC	2 cut(s)	59, 65
Hpy188I	TCNGA	7 cut(s)	129, 302, 413, 514, 904, 1042, 1100
Hpy188III	TCNNGA	6 cut(s)	14, 98, 395, 477, 567, 1143
Hpy8I	GTNNAC	2 cut(s)	59, 65
Hpy99I	CGWCG	1 cut(s)	417
HpyAV	CCTTC	5 cut(s)	305, 509, 1057, 1069, 1140
HpyCH4III	ACNGT	2 cut(s)	667, 1095
HpyCH4IV	ACGT	2 cut(s)	61, 921
HpyCH4V	TGCA	8 cut(s)	4, 542, 603, 650, 662, 967, 995, 1051
HpyF10VI	GCNNNNNNNGC	5 cut(s)	203, 536, 589, 668, 1029
HpyF3I	CTNAG	6 cut(s)	299, 888, 901, 912, 952, 1086
HpySE526I	ACGT	2 cut(s)	61, 921
Hsp92I	GRCGYC	3 cut(s)	67, 285, 740
Hsp92II	CATG	6 cut(s)	244, 422, 461, 506, 527, 1063
KflI	GGGWCCC	1 cut(s)	768
KpnI	GGTACC	1 cut(s)	327
KroI	GCCGGC	2 cut(s)	287, 619
KroNI	GCCGGC	2 cut(s)	289, 621
Ksp22I	TGATCA	1 cut(s)	1114
Kzo9I	GATC	5 cut(s)	10, 91, 408, 832, 1114
LmnI	GCTCC	8 cut(s)	115, 180, 370, 397, 535, 709, 850, 958
Lsp1109I	GCAGC	5 cut(s)	94, 139, 218, 526, 840
LweI	GCATC	7 cut(s)	19, 284, 472, 570, 649, 793, 1004
MaeI	CTAG	1 cut(s)	930
MaeII	ACGT	2 cut(s)	61, 921
MaeIII	GTNAC	2 cut(s)	917, 932
MalI	GATC	5 cut(s)	12, 93, 410, 834, 1116
MboI	GATC	5 cut(s)	10, 91, 408, 832, 1114
MboII	GAAGA	2 cut(s)	337, 441
MhlI	GDGCHC	4 cut(s)	120, 594, 900, 963
MlsI	TGGCCA	1 cut(s)	462
MluCI	AATT	1 cut(s)	723
MluNI	TGGCCA	1 cut(s)	462
MlyI	GAGTC	1 cut(s)	925
MmeI	TCCRAC	1 cut(s)	436
Mox20I	TGGCCA	1 cut(s)	462
MroNI	GCCGGC	2 cut(s)	287, 619
MroXI	GAANNNNTTC	1 cut(s)	1094
MscI	TGGCCA	1 cut(s)	462
MseI	TTAA	2 cut(s)	498, 552
MslI	CAYNNNNRTG	1 cut(s)	47
Msp20I	TGGCCA	1 cut(s)	462
MspI	CCGG	4 cut(s)	288, 533, 620, 783
MspR9I	CCNGG	6 cut(s)	121, 168, 194, 354, 656, 737
Mva1269I	GAATGC	2 cut(s)	109, 154
MvaI	CCWGG	6 cut(s)	121, 168, 194, 354, 656, 737
MwoI	GCNNNNNNNGC	5 cut(s)	203, 536, 589, 668, 1029
NaeI	GCCGGC	2 cut(s)	289, 621
NdeII	GATC	5 cut(s)	10, 91, 408, 832, 1114
NgoMIV	GCCGGC	2 cut(s)	287, 619
NlaIII	CATG	6 cut(s)	244, 422, 461, 506, 527, 1063
NlaIV	GGNNCC	6 cut(s)	325, 393, 531, 769, 770, 960
NmuCI	GTSAC	1 cut(s)	917
NspI	RCATGY	1 cut(s)	527
PciI	ACATGT	1 cut(s)	523
PctI	GAATGC	2 cut(s)	109, 154
PdiI	GCCGGC	2 cut(s)	289, 621
PdmI	GAANNNNTTC	1 cut(s)	1094
PfeI	GAWTC	3 cut(s)	635, 640, 905
PflMI	CCANNNNNTGG	2 cut(s)	218, 713
PfoI	TCCNGGA	1 cut(s)	166
PkrI	GCNGC	5 cut(s)	109, 154, 208, 541, 855
PleI	GAGTC	1 cut(s)	924
PpsI	GAGTC	1 cut(s)	924
Ppu21I	YACGTR	1 cut(s)	922
PpuMI	RGGWCCY	1 cut(s)	768
PscI	ACATGT	1 cut(s)	523
Psp5II	RGGWCCY	1 cut(s)	768
Psp6I	CCWGG	6 cut(s)	119, 166, 192, 352, 654, 735
PspGI	CCWGG	6 cut(s)	119, 166, 192, 352, 654, 735
PspN4I	GGNNCC	6 cut(s)	325, 393, 531, 769, 770, 960
PspPI	GGNCC	5 cut(s)	196, 617, 768, 824, 1078
PspPPI	RGGWCCY	1 cut(s)	768
PstNI	CAGNNNCTG	1 cut(s)	133
RsaI	GTAC	3 cut(s)	223, 325, 375
RsaNI	GTAC	3 cut(s)	222, 324, 374
RseI	CAYNNNNRTG	1 cut(s)	47
SaqAI	TTAA	2 cut(s)	498, 552
SatI	GCNGC	5 cut(s)	108, 153, 207, 540, 854
Sau3AI	GATC	5 cut(s)	10, 91, 408, 832, 1114
Sau96I	GGNCC	5 cut(s)	196, 617, 768, 824, 1078
SchI	GAGTC	1 cut(s)	925
ScrFI	CCNGG	6 cut(s)	121, 168, 194, 354, 656, 737
SduI	GDGCHC	4 cut(s)	120, 594, 900, 963
SfaNI	GCATC	7 cut(s)	19, 284, 472, 570, 649, 793, 1004
SfcI	CTRYAG	1 cut(s)	843
SinI	GGWCC	2 cut(s)	768, 1078
SmiMI	CAYNNNNRTG	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
Sse9I	AATT	1 cut(s)	723
SspMI	CTAG	1 cut(s)	930
StyD4I	CCNGG	6 cut(s)	119, 166, 192, 352, 654, 735
TaaI	ACNGT	2 cut(s)	667, 1095
TaiI	ACGT	2 cut(s)	64, 924
TaqI	TCGA	5 cut(s)	556, 594, 638, 677, 710
TasI	AATT	1 cut(s)	723
TfiI	GAWTC	3 cut(s)	635, 640, 905
Tru1I	TTAA	2 cut(s)	498, 552
Tru9I	TTAA	2 cut(s)	498, 552
TscAI	CASTG	1 cut(s)	637
TseFI	GTSAC	1 cut(s)	917
TseI	GCWGC	5 cut(s)	107, 152, 206, 539, 853
Tsp45I	GTSAC	1 cut(s)	917
TspDTI	ATGAA	4 cut(s)	435, 446, 1076, 1088
TspGWI	ACGGA	2 cut(s)	88, 201
TspRI	CASTG	1 cut(s)	637
Van91I	CCANNNNNTGG	2 cut(s)	218, 713
VpaK11BI	GGWCC	2 cut(s)	768, 1078
XceI	RCATGY	1 cut(s)	527
XmnI	GAANNNNTTC	1 cut(s)	1094
XspI	CTAG	1 cut(s)	930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.