Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0006724

Physical Location & Seq

Genomic Coordinates Reverse (-)

35153774 .. 35155009

Gene Structure 1236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G024780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGCAAGGAGATCAAGAAAACATTGCTGATGCCTTATCAAACATCCCTGTGAAGCGTAAACGTGGACGCCCACGGAAATATCCAAGACTTGATCCTCAAGAGAATGCTTCTCCTGTGCCCAGGTATCAGAACCTGAACTTGGGAGAGAATGCTGCTGTTCCCCCTCCTGGATTTGTAAGGAGCAACGGAAACCAGGCCCAACAAGCAGCACCAACTAATGGTACAAGTACAACTGATAACATGGTGGGAATGGTTATTTCTGGTGTTGTTGAAGCATCATTTGATGCCGGCTACCTTCTCAGAGTTAGGGTTGGTAATACTGGTACCACTTTGAGGGGTGTTGTCTTCAAGCCTGGACATTACGCTCCTGTTGTTCCAGAAAATGATGTGGCTCCAGATGTTGAAATGATCCGACGGCATGAAATTGCCCTACCAGTTGAGAACCATTCTTCTGTTCATGGCCATAAACCTCATTCAAGAGATGCTTCCCACCCCGTTAATCATGTGGCTCCGGTGGCTGCACAAAATGTTAATCGAGTAACGTCCAGAGGCAACTTGATGCCTGTTGTGCTCGAACCTTGCAAGGTATCAAATGGCCCGGCACTCACCAGTGAATCAAATCCCGTTGCAACCCAGGCTGCAACCGTAGCAACCTCAAAAGGGAAACAGGTTGTATCAGCTGCTCCATCGAATGGGTGTTCAATTCCCAACGACCAGGCGTCAGCAGTTCAAAATCAAATGCTCGGGTCCCAACCTCACACCGGCCATCAGGTGATATATGATGCTAAAATAAATGAGAATGGTCCTACTGATCCACCCTCTGTAGAGGAGCTGCGTAAGACAGAAGCCAAGCAAATGACATTGCCTGAGAATGTGCCCTCAGAATCAACTGAGAGTCACGTAGAGGCTAGTAACTTGGCTACTCAACCCTTAGTCGAGCCCCTGCAAGCAGTAGAGCATAAAGACCATCCTGCATCTGCTTCCAAACCAATGGAGGATGGCAGAAATGGCAAAATGTCCGAGCTATTGCAGGTTTTGCAGGAAAGCATGAAGGAGAGGATGAAGGACCAAACTGAGAAACTGTTCGGAGATGGACAAAATGATCATTCAAGCACACCTTCACAGGCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

377

Amino Acids

40.38

Weight (kDa)

6.16

Isoelectric Point (pI)

48.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54930 AT5G54930
fragaria_vesca	FvH4_3g22550 FvH4_3g22550 FvH4_3g22550
malus_domestica	MD03G1202000.v1.1 MD11G1219200.v1.1
prunus_persica	Prupe.4G212100_v2.0.a1 Prupe.4G212100_v2.0.a1 Prupe.4G212100_v2.0.a1 Prupe.4G212100_v2.0.a1
pyrus_communis	pycom03g15330 pycom11g19310
rosa_chinensis	RchiOBHm_Chr5g0039291
rosa_laevigata	RLG00000033904
rosa_multiflora	Rmu_ssc0000410.1_g000050
rosa_roxburghii	Rroxscaffold_1G00040490 Rroxscaffold_1G00041850
rosa_rugosa	Rorug05G0177800 Rorug05G0177900 Rorug05G0178000
rosa_samantha	Rh5AG264200 Rh5BG269300 Rh5CG302200 Rh5DG276900
rosa_wichuraiana	Rw5G024780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1021
Acc65I	GGTACC	1 cut(s)	323
AccB1I	GGYRCC	1 cut(s)	323
AccB7I	CCANNNNNTGG	2 cut(s)	218, 692
AclWI	GGATC	3 cut(s)	86, 403, 806
AcoI	YGGCCR	2 cut(s)	460, 763
AcyI	GRCGYC	2 cut(s)	67, 719
AfaI	GTAC	3 cut(s)	223, 229, 325
AfiI	CCNNNNNNNGG	7 cut(s)	139, 167, 218, 333, 660, 692, 761
AgsI	TTSAA	7 cut(s)	272, 349, 404, 477, 702, 731, 1110
AhdI	GACNNNNNGTC	1 cut(s)	718
AjnI	CCWGG	6 cut(s)	119, 166, 192, 352, 633, 714
AjuI	GAANNNNNNNTTGG	2 cut(s)	122, 154
AluBI	AGCT	3 cut(s)	680, 832, 1024
AluI	AGCT	3 cut(s)	680, 832, 1024
Alw21I	GWGCWC	1 cut(s)	573
AlwI	GGATC	3 cut(s)	86, 403, 806
AlwNI	CAGNNNCTG	1 cut(s)	133
Ama87I	CYCGRG	1 cut(s)	743
AoxI	GGCC	4 cut(s)	195, 460, 595, 763
ApeKI	GCWGC	6 cut(s)	152, 206, 518, 638, 680, 832
Asp700I	GAANNNNTTC	1 cut(s)	1082
Asp718I	GGTACC	1 cut(s)	323
AspS9I	GGNCC	5 cut(s)	196, 596, 747, 803, 1066
AsuC2I	CCSGG	1 cut(s)	599
AsuHPI	GGTGA	2 cut(s)	598, 784
AvaI	CYCGRG	1 cut(s)	743
AvaII	GGWCC	3 cut(s)	747, 803, 1066
BaeGI	GKGCMC	2 cut(s)	120, 879
BalI	TGGCCA	1 cut(s)	462
BanI	GGYRCC	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	942
BbsI	GAAGAC	1 cut(s)	337
Bbv12I	GWGCWC	1 cut(s)	573
BbvI	GCAGC	6 cut(s)	139, 218, 505, 625, 667, 819
BccI	CCATC	5 cut(s)	694, 774, 975, 992, 1085
BceAI	ACGGC	1 cut(s)	431
BciT130I	CCWGG	6 cut(s)	121, 168, 194, 354, 635, 716
BclI	TGATCA	1 cut(s)	1102
BcnI	CCSGG	1 cut(s)	599
BfaI	CTAG	1 cut(s)	909
BfmI	CTRYAG	1 cut(s)	822
BfuAI	ACCTGC	1 cut(s)	1021
BisI	GCNGC	6 cut(s)	153, 207, 519, 639, 681, 833
BlsI	GCNGC	6 cut(s)	154, 208, 520, 640, 682, 834
Bme1390I	CCNGG	7 cut(s)	121, 168, 194, 354, 599, 635, 716
Bme18I	GGWCC	3 cut(s)	747, 803, 1066
BmeRI	GACNNNNNGTC	1 cut(s)	718
BmeT110I	CYCGRG	1 cut(s)	743
BmgT120I	GGNCC	5 cut(s)	196, 596, 747, 803, 1066
BmiI	GGNNCC	5 cut(s)	325, 393, 510, 748, 749
BmrFI	CCNGG	7 cut(s)	121, 168, 194, 354, 599, 635, 716
BmsI	GCATC	7 cut(s)	19, 274, 284, 472, 549, 772, 983
BpiI	GAAGAC	1 cut(s)	337
BpmI	CTGGAG	1 cut(s)	378
BpuEI	CTTGAG	1 cut(s)	81
BpuMI	CCSGG	1 cut(s)	599
BsaAI	YACGTR	1 cut(s)	901
BsaHI	GRCGYC	2 cut(s)	67, 719
BsaJI	CCNNGG	3 cut(s)	71, 119, 633
BsaWI	WCCGGW	1 cut(s)	511
Bsc4I	CCNNNNNNNGG	7 cut(s)	139, 167, 218, 333, 660, 692, 761
Bse118I	RCCGGY	2 cut(s)	287, 761
Bse1I	ACTGG	3 cut(s)	325, 434, 609
Bse3DI	GCAATG	2 cut(s)	21, 860
BseBI	CCWGG	6 cut(s)	121, 168, 194, 354, 635, 716
BseDI	CCNNGG	3 cut(s)	71, 119, 633
BseGI	GGATG	4 cut(s)	42, 967, 1003, 1065
BseLI	CCNNNNNNNGG	7 cut(s)	139, 167, 218, 333, 660, 692, 761
BseMI	GCAATG	2 cut(s)	21, 860
BseMII	CTCAG	5 cut(s)	313, 858, 882, 894, 1065
BseNI	ACTGG	3 cut(s)	325, 434, 609
BseRI	GAGGAG	1 cut(s)	842
BseSI	GKGCMC	2 cut(s)	120, 879
BseXI	GCAGC	6 cut(s)	139, 218, 505, 625, 667, 819
BsgI	GTGCAG	1 cut(s)	504
BshFI	GGCC	4 cut(s)	197, 462, 597, 765
BshNI	GGYRCC	1 cut(s)	323
BsiHKAI	GWGCWC	1 cut(s)	573
BsiHKCI	CYCGRG	1 cut(s)	743
BsiSI	CCGG	4 cut(s)	288, 512, 599, 762
BslFI	GGGAC	1 cut(s)	733
BslI	CCNNNNNNNGG	7 cut(s)	139, 167, 218, 333, 660, 692, 761
BsmFI	GGGAC	1 cut(s)	733
BsmI	GAATGC	2 cut(s)	109, 154
BsnI	GGCC	4 cut(s)	197, 462, 597, 765
BsoBI	CYCGRG	1 cut(s)	743
Bsp1286I	GDGCHC	4 cut(s)	120, 573, 879, 942
Bsp143I	GATC	5 cut(s)	10, 91, 408, 811, 1102
BspANI	GGCC	4 cut(s)	197, 462, 597, 765
BspCNI	CTCAG	5 cut(s)	312, 859, 883, 893, 1066
BspLI	GGNNCC	5 cut(s)	325, 393, 510, 748, 749
BspMI	ACCTGC	1 cut(s)	1021
BspPI	GGATC	3 cut(s)	86, 403, 806
BspT107I	GGYRCC	1 cut(s)	323
BsrDI	GCAATG	2 cut(s)	21, 860
BsrFI	RCCGGY	2 cut(s)	287, 761
BsrI	ACTGG	3 cut(s)	325, 434, 609
BssAI	RCCGGY	2 cut(s)	287, 761
BssECI	CCNNGG	3 cut(s)	71, 119, 633
BssMI	GATC	5 cut(s)	10, 91, 408, 811, 1102
BssNI	GRCGYC	2 cut(s)	67, 719
Bst2UI	CCWGG	6 cut(s)	121, 168, 194, 354, 635, 716
Bst4CI	ACNGT	2 cut(s)	646, 1083
BstACI	GRCGYC	2 cut(s)	67, 719
BstAPI	GCANNNNNTGC	1 cut(s)	1036
BstBAI	YACGTR	1 cut(s)	901
BstC8I	GCNNGC	2 cut(s)	289, 948
BstDEI	CTNAG	6 cut(s)	299, 867, 880, 891, 931, 1074
BstDSI	CCRYGG	1 cut(s)	71
BstF5I	GGATG	4 cut(s)	42, 967, 1003, 1065
BstKTI	GATC	5 cut(s)	13, 94, 411, 814, 1105
BstMBI	GATC	5 cut(s)	10, 91, 408, 811, 1102
BstMWI	GCNNNNNNNGC	7 cut(s)	203, 515, 568, 635, 647, 1008, 1036
BstNI	CCWGG	6 cut(s)	121, 168, 194, 354, 635, 716
BstSCI	CCNGG	7 cut(s)	119, 166, 192, 352, 597, 633, 714
BstSFI	CTRYAG	1 cut(s)	822
BstSLI	GKGCMC	2 cut(s)	120, 879
BstV1I	GCAGC	6 cut(s)	139, 218, 505, 625, 667, 819
BstV2I	GAAGAC	1 cut(s)	337
BstXI	CCANNNNNNTGG	1 cut(s)	991
BsuRI	GGCC	4 cut(s)	197, 462, 597, 765
BtgI	CCRYGG	1 cut(s)	71
BtsCI	GGATG	4 cut(s)	42, 967, 1003, 1065
BtsIMutI	CAGTG	1 cut(s)	616
BveI	ACCTGC	1 cut(s)	1021
Cac8I	GCNNGC	2 cut(s)	289, 948
CaiI	CAGNNNCTG	1 cut(s)	133
Cfr10I	RCCGGY	2 cut(s)	287, 761
Cfr13I	GGNCC	5 cut(s)	196, 596, 747, 803, 1066
CseI	GACGC	2 cut(s)	75, 708
Csp6I	GTAC	3 cut(s)	222, 228, 324
CviAII	CATG	5 cut(s)	241, 419, 458, 503, 1048
CviQI	GTAC	3 cut(s)	222, 228, 324
DdeI	CTNAG	6 cut(s)	299, 867, 880, 891, 931, 1074
DpnI	GATC	5 cut(s)	12, 93, 410, 813, 1104
DpnII	GATC	5 cut(s)	10, 91, 408, 811, 1102
DriI	GACNNNNNGTC	1 cut(s)	718
EaeI	YGGCCR	2 cut(s)	460, 763
Eam1105I	GACNNNNNGTC	1 cut(s)	718
Eco24I	GRGCYC	1 cut(s)	942
Eco47I	GGWCC	3 cut(s)	747, 803, 1066
Eco88I	CYCGRG	1 cut(s)	743
EcoO109I	RGGNCCY	1 cut(s)	747
EcoRII	CCWGG	6 cut(s)	119, 166, 192, 352, 633, 714
EcoT38I	GRGCYC	1 cut(s)	942
FaeI	CATG	5 cut(s)	244, 422, 461, 506, 1051
FaiI	YATR	9 cut(s)	242, 420, 459, 465, 504, 778, 780, 960, 1049
FalI	AAGNNNNNCTT	4 cut(s)	469, 501, 1102, 1134
FaqI	GGGAC	1 cut(s)	733
FatI	CATG	5 cut(s)	240, 418, 457, 502, 1047
FbaI	TGATCA	1 cut(s)	1102
Fnu4HI	GCNGC	6 cut(s)	153, 207, 519, 639, 681, 833
FokI	GGATG	4 cut(s)	29, 954, 1010, 1072
FriOI	GRGCYC	1 cut(s)	942
Fsp4HI	GCNGC	6 cut(s)	153, 207, 519, 639, 681, 833
FspBI	CTAG	1 cut(s)	909
GluI	GCNGC	6 cut(s)	153, 207, 519, 639, 681, 833
GsuI	CTGGAG	1 cut(s)	378
HaeIII	GGCC	4 cut(s)	197, 462, 597, 765
HapII	CCGG	4 cut(s)	288, 512, 599, 762
HgaI	GACGC	2 cut(s)	75, 708
Hin1I	GRCGYC	2 cut(s)	67, 719
Hin1II	CATG	5 cut(s)	244, 422, 461, 506, 1051
HinfI	GANTC	3 cut(s)	614, 884, 895
HpaII	CCGG	4 cut(s)	288, 512, 599, 762
HphI	GGTGA	2 cut(s)	598, 784
Hpy166II	GTNNAC	2 cut(s)	59, 65
Hpy188I	TCNGA	6 cut(s)	129, 302, 413, 883, 1021, 1088
Hpy188III	TCNNGA	7 cut(s)	14, 98, 377, 395, 477, 546, 1131
Hpy8I	GTNNAC	2 cut(s)	59, 65
Hpy99I	CGWCG	1 cut(s)	417
HpyAV	CCTTC	4 cut(s)	305, 1045, 1057, 1128
HpyCH4III	ACNGT	2 cut(s)	646, 1083
HpyCH4IV	ACGT	3 cut(s)	61, 542, 900
HpyCH4V	TGCA	9 cut(s)	4, 521, 582, 629, 641, 946, 974, 1030, 1039
HpyF10VI	GCNNNNNNNGC	7 cut(s)	203, 515, 568, 635, 647, 1008, 1036
HpyF3I	CTNAG	6 cut(s)	299, 867, 880, 891, 931, 1074
HpySE526I	ACGT	3 cut(s)	61, 542, 900
Hsp92I	GRCGYC	2 cut(s)	67, 719
Hsp92II	CATG	5 cut(s)	244, 422, 461, 506, 1051
KflI	GGGWCCC	1 cut(s)	747
KpnI	GGTACC	1 cut(s)	327
KroI	GCCGGC	1 cut(s)	287
KroNI	GCCGGC	1 cut(s)	289
Ksp22I	TGATCA	1 cut(s)	1102
Kzo9I	GATC	5 cut(s)	10, 91, 408, 811, 1102
LmnI	GCTCC	6 cut(s)	180, 370, 397, 514, 688, 829
Lsp1109I	GCAGC	6 cut(s)	139, 218, 505, 625, 667, 819
LweI	GCATC	7 cut(s)	19, 274, 284, 472, 549, 772, 983
MaeI	CTAG	1 cut(s)	909
MaeII	ACGT	3 cut(s)	61, 542, 900
MaeIII	GTNAC	3 cut(s)	538, 896, 911
MalI	GATC	5 cut(s)	12, 93, 410, 813, 1104
MboI	GATC	5 cut(s)	10, 91, 408, 811, 1102
MboII	GAAGA	2 cut(s)	337, 441
MhlI	GDGCHC	4 cut(s)	120, 573, 879, 942
MlsI	TGGCCA	1 cut(s)	462
MluCI	AATT	2 cut(s)	423, 702
MluNI	TGGCCA	1 cut(s)	462
MlyI	GAGTC	1 cut(s)	904
MmeI	TCCRAC	1 cut(s)	436
Mox20I	TGGCCA	1 cut(s)	462
MroNI	GCCGGC	1 cut(s)	287
MroXI	GAANNNNTTC	1 cut(s)	1082
MscI	TGGCCA	1 cut(s)	462
MseI	TTAA	2 cut(s)	498, 531
MslI	CAYNNNNRTG	1 cut(s)	47
Msp20I	TGGCCA	1 cut(s)	462
MspA1I	CMGCKG	1 cut(s)	680
MspI	CCGG	4 cut(s)	288, 512, 599, 762
MspR9I	CCNGG	7 cut(s)	121, 168, 194, 354, 599, 635, 716
Mva1269I	GAATGC	2 cut(s)	109, 154
MvaI	CCWGG	6 cut(s)	121, 168, 194, 354, 635, 716
MwoI	GCNNNNNNNGC	7 cut(s)	203, 515, 568, 635, 647, 1008, 1036
NaeI	GCCGGC	1 cut(s)	289
NciI	CCSGG	1 cut(s)	599
NdeII	GATC	5 cut(s)	10, 91, 408, 811, 1102
NgoMIV	GCCGGC	1 cut(s)	287
NlaIII	CATG	5 cut(s)	244, 422, 461, 506, 1051
NlaIV	GGNNCC	5 cut(s)	325, 393, 510, 748, 749
NmuCI	GTSAC	1 cut(s)	896
PctI	GAATGC	2 cut(s)	109, 154
PdiI	GCCGGC	1 cut(s)	289
PdmI	GAANNNNTTC	1 cut(s)	1082
PfeI	GAWTC	2 cut(s)	614, 884
PflMI	CCANNNNNTGG	2 cut(s)	218, 692
PfoI	TCCNGGA	1 cut(s)	166
PkrI	GCNGC	6 cut(s)	154, 208, 520, 640, 682, 834
PleI	GAGTC	1 cut(s)	903
PpsI	GAGTC	1 cut(s)	903
Ppu21I	YACGTR	1 cut(s)	901
PpuMI	RGGWCCY	1 cut(s)	747
Psp5II	RGGWCCY	1 cut(s)	747
Psp6I	CCWGG	6 cut(s)	119, 166, 192, 352, 633, 714
PspGI	CCWGG	6 cut(s)	119, 166, 192, 352, 633, 714
PspN4I	GGNNCC	5 cut(s)	325, 393, 510, 748, 749
PspPI	GGNCC	5 cut(s)	196, 596, 747, 803, 1066
PspPPI	RGGWCCY	1 cut(s)	747
PstNI	CAGNNNCTG	1 cut(s)	133
PvuII	CAGCTG	1 cut(s)	680
RsaI	GTAC	3 cut(s)	223, 229, 325
RsaNI	GTAC	3 cut(s)	222, 228, 324
RseI	CAYNNNNRTG	1 cut(s)	47
SaqAI	TTAA	2 cut(s)	498, 531
SatI	GCNGC	6 cut(s)	153, 207, 519, 639, 681, 833
Sau3AI	GATC	5 cut(s)	10, 91, 408, 811, 1102
Sau96I	GGNCC	5 cut(s)	196, 596, 747, 803, 1066
SchI	GAGTC	1 cut(s)	904
ScrFI	CCNGG	7 cut(s)	121, 168, 194, 354, 599, 635, 716
SduI	GDGCHC	4 cut(s)	120, 573, 879, 942
SfaNI	GCATC	7 cut(s)	19, 274, 284, 472, 549, 772, 983
SfcI	CTRYAG	1 cut(s)	822
SinI	GGWCC	3 cut(s)	747, 803, 1066
SmiMI	CAYNNNNRTG	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
Sse9I	AATT	2 cut(s)	423, 702
SspMI	CTAG	1 cut(s)	909
StyD4I	CCNGG	7 cut(s)	119, 166, 192, 352, 597, 633, 714
TaaI	ACNGT	2 cut(s)	646, 1083
TaiI	ACGT	3 cut(s)	64, 545, 903
TaqI	TCGA	4 cut(s)	535, 573, 689, 936
TasI	AATT	2 cut(s)	423, 702
TatI	WGTACW	1 cut(s)	227
TfiI	GAWTC	2 cut(s)	614, 884
Tru1I	TTAA	2 cut(s)	498, 531
Tru9I	TTAA	2 cut(s)	498, 531
TscAI	CASTG	1 cut(s)	616
TseFI	GTSAC	1 cut(s)	896
TseI	GCWGC	6 cut(s)	152, 206, 518, 638, 680, 832
Tsp45I	GTSAC	1 cut(s)	896
TspDTI	ATGAA	4 cut(s)	435, 446, 1064, 1076
TspGWI	ACGGA	2 cut(s)	88, 201
TspRI	CASTG	1 cut(s)	616
Van91I	CCANNNNNTGG	2 cut(s)	218, 692
VpaK11BI	GGWCC	3 cut(s)	747, 803, 1066
XmnI	GAANNNNTTC	1 cut(s)	1082
XspI	CTAG	1 cut(s)	909

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.