AT5G55040

bromo domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007816
Physical Location & Seq
Reverse (-)
22326940 .. 22332078
5139 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G55040.2

Sequence Viewer

Length: 2751 bp
ATGAGTCAGATCGCGAGACGACGGAGGAAAGGTCGTCCGTCGAAGGCAGATCTGGCGGCGCGGCGTAGTAGTTCATCTCCGCGTGAATCGGGATATGAGCTCCGGCGAGGTCAAAGGCAGCGAAATGTGAGGTATAACTTCGATTTCGACGATTACTTCGACGAGGAGGAAGAGGATGAGGTTGAAGAGGAGAAGAAGAGACAGAAGAAGCTGAAACAAGTTCTTAAGCTGAACCAGAGCCGTGCTAGAGCTGACCCTCCTGTTAAGAGTCGAGCGCGTGTGAGACACGCGTCTGATTATGAAGAAGAAGACGAAGAAGATGATGAAGCAGAGGAGGAGGAGGAAGAAGTAAGTGAGAAGAGGCAAGTCAAGAAGAGGAAACTTAACCGTCAAGACGAAGAAGAGGAAGAGGAAGAAGAGAAGGATTACGATGTGGAAGAGGAGGAAGAAGAAGAAGAAGGTCACGCTGATTCTGAGGAAGAGGATGATAAGGAAAGGAAGAGGAGGAGCGCTTCTGGGAATCAGTGTGATCATTCTTCAGAAACAACACCTATCCTTGACAAGAAGTCTTTGGAGTTGATTCTTGACAAACTTCAAAAGAAAGACATCTATGGTGTGTATGCAGAACCTGTTGATCCTGAAGAGCTTCCTGATTATCATGATATGATAGAGCATCCCATGGATTTTTCCACAGTGAGGAAGAAGCTTGCGAATGGATCATATTCTACGTTGGAAGAGCTCGAGAGCGATGTCTTATTGATTTGCTCAAATGCAATGCAATACAATTCCTCAGACACTGTCTACTATAAACAGGCAAGGACTATTCAGGAAATGGGAAAGCGGAAGTTCGAGAAGGCAAGGCTTAAGATTAAACGAGCTGAAAAAGAGCTTAAAACAGATGAAAAGGTGAAACCTGACAGCTCTGTGAAGAAGCAAGTGAGACAGCCATTCAGTCGAAATGGTCTAGAGGCCGTTGGTTCTGATTTCTCATCTGGGGCGAACCTTGCTAGTGGAGGAGCTTCTCAAAACGAGCCGGTTTCAACTCAAATCGGCGGACATGAAAAGCACAGCTACACGGATGTGCTTTTTGAGGGCAACACATCATTAGTAGACAGTCTGGAGAAAGCAGAAGACTTATCATCTGGGAAGGGTCTCTTTGGTAAGTGTGGGAGGAAGCTGTCGGTTGTTGAGGAAGACCGCCGTGCAACCTATGAAGATTCTGATCAGCAGGGCGATAGATCGGAGTCCATATTCACAACATTTGAGAGTGAAATCAAGCAGTTTGTTGCTGTAGGGCTTCATGCAGAACATGCGTATGGTAGGAGCCTTGCACGTTTTGCTGCAACTCTTGGACCCGTTGCATGGAAAATAGCTTCTCAGCGAATCGAGCAAGCACTACCTGCAGACTTTAAGTTTGGCCGGGGATGGGTTGGAGAATACGAGCCGCTTCCTACACCAGTACTTCTATTTGAAACCTGCACACCTAAAGAACCACCTAAAAAAGCATCTGTGTTTTCAAAGCGGAAATCAAATGCTGCAACAAAGACGAATGAGACACTGTTTAAGACTCCTCTGCCTGCAAAGGAACAACAGGGTAGCCGACCAGTTCGAGATGGAAACCATGCATTCCCATTTCCAGCATCTATTGGGGCTTTGTCAGAAGGGAGTCCCTCTTTTGTTGCTACTCAGGTAGGAAACCTAAAATCTATGAGCCAGCATGAATATCGAAATCCTTCTCAGCTAGATTTTGTCAAGCCTCAAAATAGGATTCCTCAGCAAGTAGAACTGAATTTACCCCCACCAGCAGAACAAACCAATTCCGGTTCTGGCTGTGTTTTGGAAAACCAAAGCTTTGGAAAATCAGATACGGTGGCATCATACAGGTCATCAAGTGACATGATGAGGAACATGAGTTCTACAGATTCTGAACATTACAAGCACCAGATGACTACTAACGGGATCTTCCCTGGTGGATTGAGGAATGGCAAAGTCTCTCCCGGTGTGAACAACAGAATGTTTGATCTATCTACTGATTTTGCTAATCAAATGAGTCGCACAGCAACAAGTTCACAGCAACCAATGAGACAACAGAGTCAAAGCCACGAGGAACAAGCACAGATAATGAGAAACTTCAATGAGAGGGCTAGAACACAGCACAACTCCACTTATAATCATCCTAAAGCTGATGCTCCACCGAAGATTTCGTCACCACAATCCGCAAGAAGTGAAGATTCAGGCAATGCTTCTGTAGCAGCAGCACGAGCATGGATGTCGATAGGAGCTGGAGGGAATAATAAACAAACATTTGAAAATGCTAGTAATCCGAAGAGCAGCCAGATTTCTGCGGAGTCCTTGTATAATCCATCAAGAGAACATTTTCACCAACAAGCTTTCAAACCGAGAGATGCTGAAGAGACACAGTTCCATCCTCAAAGGAATGGTTTCCCTTTCCAGACATTTGTGCACCAACCTGTTCACGGGATGATGAACGGAGGATACCAACCATTTCAAAACAACCGACCAATTGTTTTCCCTCAGATGGCTGCCCCAACTTCTGATTTCTCAAGATTCCATGTCCAGTCTCAATGGCGAGGAGGCATTACTCCACAAGTCCAGTTGAAGCAGAGACAAGAGAATTTCAATCTCCCACCAGATTTGAACATCGGAGTTCATTCGCCTGATTCTCCTGCAAAACAATCTTCTGGTGTTCGTGTCGATTCCCAACAGCCTGATTTGGCGCTACAGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0042393 GO:0070577 GO:0140030 GO:0140033
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain

Protein Analysis

916

Amino Acids

103.41

Weight (kDa)

5.79

Isoelectric Point (pI)

66.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 194 - 273 3.7e-26 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2169
AasI GACNNNNNNGTC 1 cut(s) 2091
Acc36I ACCTGC 2 cut(s) 1408, 1484
AccI GTMKAC 2 cut(s) 801, 1110
AccII CGCG 5 cut(s) 14, 61, 82, 277, 290
AclWI GGATC 3 cut(s) 629, 724, 1967
AcoI YGGCCR 1 cut(s) 1417
AcsI RAATTY 2 cut(s) 1789, 2635
AcuI CTGAAG 3 cut(s) 522, 660, 2430
AfaI GTAC 1 cut(s) 1461
AfeI AGCGCT 1 cut(s) 511
AfiI CCNNNNNNNGG 5 cut(s) 696, 1362, 1426, 2477, 2539
AflII CTTAAG 2 cut(s) 224, 863
AflIII ACRYGT 1 cut(s) 288
AhdI GACNNNNNGTC 1 cut(s) 565
AjnI CCWGG 1 cut(s) 1966
AleI CACNNNNGTG 1 cut(s) 1079
AloI GAACNNNNNNTCC 2 cut(s) 1897, 1929
Alw21I GWGCWC 3 cut(s) 102, 741, 2466
Alw44I GTGCAC 1 cut(s) 2462
AlwI GGATC 3 cut(s) 629, 724, 1967
AlwNI CAGNNNCTG 3 cut(s) 629, 797, 1925
Ama87I CYCGRG 1 cut(s) 740
Aor51HI AGCGCT 1 cut(s) 511
AoxI GGCC 2 cut(s) 969, 1417
ApaLI GTGCAC 1 cut(s) 2462
ApeKI GCWGC 7 cut(s) 118, 1340, 1535, 2252, 2255, 2331, 2543
ApoI RAATTY 2 cut(s) 1789, 2635
ArsI GACNNNNNNTTYG 6 cut(s) 140, 172, 1397, 1429, 2189, 2221
Asp700I GAANNNNTTC 4 cut(s) 645, 1732, 2376, 2441
AspLEI GCGC 4 cut(s) 61, 277, 512, 2740
AspS9I GGNCC 1 cut(s) 1352
AsuC2I CCSGG 2 cut(s) 1421, 1998
AsuHPI GGTGA 3 cut(s) 919, 2199, 2372
AvaI CYCGRG 1 cut(s) 740
AvaII GGWCC 1 cut(s) 1352
BaeGI GKGCMC 1 cut(s) 2466
BanII GRGCYC 2 cut(s) 102, 741
BauI CACGAG 2 cut(s) 2102, 2259
BbsI GAAGAC 3 cut(s) 315, 1137, 1200
Bbv12I GWGCWC 3 cut(s) 102, 741, 2466
BbvCI CCTCAGC 1 cut(s) 1773
BbvI GCAGC 7 cut(s) 130, 1327, 1522, 2264, 2267, 2343, 2530
BccI CCATC 5 cut(s) 1419, 1607, 2371, 2433, 2533
BceAI ACGGC 3 cut(s) 225, 956, 1185
BcgI CGANNNNNNTGC 4 cut(s) 1706, 1740, 2253, 2287
BciT130I CCWGG 1 cut(s) 1968
BciVI GTATCC 1 cut(s) 2489
BclI TGATCA 2 cut(s) 529, 1222
BcnI CCSGG 2 cut(s) 1421, 1998
BfaI CTAG 6 cut(s) 246, 965, 1008, 1742, 2145, 2316
BfmI CTRYAG 5 cut(s) 1290, 1401, 1917, 2247, 2741
BfoI RGCGCY 2 cut(s) 513, 2741
BfrI CTTAAG 2 cut(s) 224, 863
BfuAI ACCTGC 2 cut(s) 1408, 1484
BfuI GTATCC 1 cut(s) 2489
BglII AGATCT 1 cut(s) 49
BmcAI AGTACT 1 cut(s) 1461
Bme1390I CCNGG 3 cut(s) 1421, 1968, 1998
Bme18I GGWCC 1 cut(s) 1352
BmeRI GACNNNNNGTC 1 cut(s) 565
BmeT110I CYCGRG 1 cut(s) 740
BmgT120I GGNCC 1 cut(s) 1352
BmiI GGNNCC 2 cut(s) 1325, 1354
BmrFI CCNGG 3 cut(s) 1421, 1968, 1998
BmsI GCATC 6 cut(s) 682, 1514, 1649, 1883, 2176, 2395
BoxI GACNNNNGTC 1 cut(s) 289
BpiI GAAGAC 3 cut(s) 315, 1137, 1200
BpmI CTGGAG 2 cut(s) 1139, 2304
Bpu10I CCTNAGC 1 cut(s) 1773
BpuEI CTTGAG 1 cut(s) 2548
BpuMI CCSGG 2 cut(s) 1421, 1998
BsaBI GATNNNNATC 1 cut(s) 1221
BsaI GGTCTC 1 cut(s) 1157
BsaJI CCNNGG 3 cut(s) 678, 1420, 1966
BsaWI WCCGGW 1 cut(s) 1820
BsaXI ACNNNNNCTCC 4 cut(s) 16, 46, 2339, 2369
Bsc4I CCNNNNNNNGG 5 cut(s) 696, 1362, 1426, 2477, 2539
Bse118I RCCGGY 1 cut(s) 1033
Bse1I ACTGG 4 cut(s) 1457, 1604, 2578, 2614
Bse3DI GCAATG 2 cut(s) 780, 2245
Bse8I GATNNNNATC 1 cut(s) 1221
BseBI CCWGG 1 cut(s) 1968
BseDI CCNNGG 3 cut(s) 678, 1420, 1966
BseGI GGATG 9 cut(s) 181, 490, 673, 1084, 1430, 2173, 2274, 2425, 2487
BseJI GATNNNNATC 1 cut(s) 1221
BseLI CCNNNNNNNGG 5 cut(s) 696, 1362, 1426, 2477, 2539
BseMI GCAATG 2 cut(s) 780, 2245
BseMII CTCAG 7 cut(s) 465, 804, 1391, 1700, 1751, 1787, 2549
BseNI ACTGG 4 cut(s) 1457, 1604, 2578, 2614
BseSI GKGCMC 1 cut(s) 2466
BseXI GCAGC 7 cut(s) 130, 1327, 1522, 2264, 2267, 2343, 2530
BsgI GTGCAG 1 cut(s) 1462
Bsh1236I CGCG 5 cut(s) 14, 61, 82, 277, 290
BshFI GGCC 2 cut(s) 971, 1419
BsiHKAI GWGCWC 3 cut(s) 102, 741, 2466
BsiHKCI CYCGRG 1 cut(s) 740
BsiSI CCGG 5 cut(s) 103, 1034, 1420, 1821, 1998
BslFI GGGAC 1 cut(s) 1653
BslI CCNNNNNNNGG 5 cut(s) 696, 1362, 1426, 2477, 2539
BsmBI CGTCTC 1 cut(s) 10
BsmFI GGGAC 1 cut(s) 1653
BsmI GAATGC 1 cut(s) 1625
BsnI GGCC 2 cut(s) 971, 1419
Bso31I GGTCTC 1 cut(s) 1157
BsoBI CYCGRG 1 cut(s) 740
Bsp1286I GDGCHC 3 cut(s) 102, 741, 2466
Bsp143I GATC 9 cut(s) 9, 49, 529, 634, 716, 1222, 1238, 1959, 2020
Bsp19I CCATGG 1 cut(s) 678
Bsp68I TCGCGA 1 cut(s) 14
BspANI GGCC 2 cut(s) 971, 1419
BspCNI CTCAG 7 cut(s) 466, 803, 1390, 1699, 1750, 1786, 2548
BspFNI CGCG 5 cut(s) 14, 61, 82, 277, 290
BspHI TCATGA 1 cut(s) 658
BspLI GGNNCC 2 cut(s) 1325, 1354
BspMAI CTGCAG 1 cut(s) 1405
BspMI ACCTGC 2 cut(s) 1408, 1484
BspPI GGATC 3 cut(s) 629, 724, 1967
BspQI GCTCTTC 3 cut(s) 636, 729, 2321
BspTI CTTAAG 2 cut(s) 224, 863
BspTNI GGTCTC 1 cut(s) 1157
BsrDI GCAATG 2 cut(s) 780, 2245
BsrFI RCCGGY 1 cut(s) 1033
BsrI ACTGG 4 cut(s) 1457, 1604, 2578, 2614
BssAI RCCGGY 1 cut(s) 1033
BssECI CCNNGG 3 cut(s) 678, 1420, 1966
BssMI GATC 9 cut(s) 9, 49, 529, 634, 716, 1222, 1238, 1959, 2020
BssSI CACGAG 2 cut(s) 2102, 2259
BssT1I CCWWGG 1 cut(s) 678
Bst2BI CACGAG 2 cut(s) 2102, 2259
Bst2UI CCWGG 1 cut(s) 1968
Bst4CI ACNGT 7 cut(s) 389, 694, 799, 1115, 1560, 1870, 2421
BstAFI CTTAAG 2 cut(s) 224, 863
BstAPI GCANNNNNTGC 3 cut(s) 1310, 1337, 1400
BstC8I GCNNGC 4 cut(s) 708, 1392, 1578, 1715
BstDEI CTNAG 7 cut(s) 474, 790, 1377, 1686, 1737, 1773, 2535
BstDSI CCRYGG 1 cut(s) 678
BstF5I GGATG 9 cut(s) 181, 490, 673, 1084, 1430, 2173, 2274, 2425, 2487
BstFNI CGCG 5 cut(s) 14, 61, 82, 277, 290
BstH2I RGCGCY 2 cut(s) 513, 2741
BstHHI GCGC 4 cut(s) 61, 277, 512, 2740
BstKTI GATC 9 cut(s) 12, 52, 532, 637, 719, 1225, 1241, 1962, 2023
BstMBI GATC 9 cut(s) 9, 49, 529, 634, 716, 1222, 1238, 1959, 2020
BstMWI GCNNNNNNNGC 8 cut(s) 53, 1004, 1310, 1337, 1387, 1400, 2249, 2261
BstNI CCWGG 1 cut(s) 1968
BstNSI RCATGY 1 cut(s) 1313
BstPAI GACNNNNGTC 1 cut(s) 289
BstSCI CCNGG 3 cut(s) 1419, 1966, 1996
BstSFI CTRYAG 5 cut(s) 1290, 1401, 1917, 2247, 2741
BstSLI GKGCMC 1 cut(s) 2466
BstUI CGCG 5 cut(s) 14, 61, 82, 277, 290
BstV1I GCAGC 7 cut(s) 130, 1327, 1522, 2264, 2267, 2343, 2530
BstV2I GAAGAC 3 cut(s) 315, 1137, 1200
BstX2I RGATCY 2 cut(s) 49, 1959
BstXI CCANNNNNNTGG 1 cut(s) 1853
BstYI RGATCY 2 cut(s) 49, 1959
BsuI GTATCC 1 cut(s) 2489
BsuRI GGCC 2 cut(s) 971, 1419
BtgI CCRYGG 1 cut(s) 678
BtgZI GCGATG 1 cut(s) 762
BtsCI GGATG 9 cut(s) 181, 490, 673, 1084, 1430, 2173, 2274, 2425, 2487
BtsIMutI CAGTG 4 cut(s) 530, 699, 795, 1556
BtuMI TCGCGA 1 cut(s) 14
BveI ACCTGC 2 cut(s) 1408, 1484
Cac8I GCNNGC 4 cut(s) 708, 1392, 1578, 1715
CaiI CAGNNNCTG 3 cut(s) 629, 797, 1925
CciI TCATGA 1 cut(s) 658
CfoI GCGC 4 cut(s) 61, 277, 512, 2740
Cfr10I RCCGGY 1 cut(s) 1033
Cfr13I GGNCC 1 cut(s) 1352
CseI GACGC 1 cut(s) 279
Csp6I GTAC 1 cut(s) 1460
CspCI CAANNNNNGTGG 2 cut(s) 2637, 2672
CviQI GTAC 1 cut(s) 1460
DdeI CTNAG 7 cut(s) 474, 790, 1377, 1686, 1737, 1773, 2535
DpnI GATC 9 cut(s) 11, 51, 531, 636, 718, 1224, 1240, 1961, 2022
DpnII GATC 9 cut(s) 9, 49, 529, 634, 716, 1222, 1238, 1959, 2020
DrdI GACNNNNNNGTC 1 cut(s) 2091
DriI GACNNNNNGTC 1 cut(s) 565
DseDI GACNNNNNNGTC 1 cut(s) 2091
EaeI YGGCCR 1 cut(s) 1417
Eam1105I GACNNNNNGTC 1 cut(s) 565
EciI GGCGGA 1 cut(s) 1068
Ecl136II GAGCTC 2 cut(s) 100, 739
Eco130I CCWWGG 1 cut(s) 678
Eco24I GRGCYC 2 cut(s) 102, 741
Eco31I GGTCTC 1 cut(s) 1157
Eco47I GGWCC 1 cut(s) 1352
Eco47III AGCGCT 1 cut(s) 511
Eco53kI GAGCTC 2 cut(s) 100, 739
Eco57I CTGAAG 3 cut(s) 522, 660, 2430
Eco88I CYCGRG 1 cut(s) 740
EcoICRI GAGCTC 2 cut(s) 100, 739
EcoRII CCWGG 1 cut(s) 1966
EcoT14I CCWWGG 1 cut(s) 678
EcoT22I ATGCAT 1 cut(s) 1627
EcoT38I GRGCYC 2 cut(s) 102, 741
ErhI CCWWGG 1 cut(s) 678
Esp3I CGTCTC 1 cut(s) 10
FalI AAGNNNNNCTT 2 cut(s) 1139, 1171
FaqI GGGAC 1 cut(s) 1653
FbaI TGATCA 2 cut(s) 529, 1222
FblI GTMKAC 2 cut(s) 801, 1110
FokI GGATG 9 cut(s) 188, 497, 660, 1091, 1437, 2160, 2281, 2412, 2494
FriOI GRGCYC 2 cut(s) 102, 741
FspBI CTAG 6 cut(s) 246, 965, 1008, 1742, 2145, 2316
GlaI GCGC 4 cut(s) 60, 276, 511, 2739
GsuI CTGGAG 2 cut(s) 1139, 2304
HaeII RGCGCY 2 cut(s) 513, 2741
HaeIII GGCC 2 cut(s) 971, 1419
HapII CCGG 5 cut(s) 103, 1034, 1420, 1821, 1998
HgaI GACGC 1 cut(s) 279
HhaI GCGC 4 cut(s) 61, 277, 512, 2740
Hin6I GCGC 4 cut(s) 59, 275, 510, 2738
HinP1I GCGC 4 cut(s) 59, 275, 510, 2738
HindIII AAGCTT 3 cut(s) 704, 1849, 2388
HpaII CCGG 5 cut(s) 103, 1034, 1420, 1821, 1998
HphI GGTGA 3 cut(s) 919, 2199, 2372
Hpy166II GTNNAC 6 cut(s) 802, 1111, 2005, 2069, 2464, 2476
Hpy8I GTNNAC 6 cut(s) 802, 1111, 2005, 2069, 2464, 2476
Hpy99I CGWCG 4 cut(s) 24, 43, 152, 164
HpyAV CCTTC 7 cut(s) 37, 415, 452, 847, 1141, 1655, 1743
HpyCH4III ACNGT 7 cut(s) 389, 694, 799, 1115, 1560, 1870, 2421
HpyCH4IV ACGT 2 cut(s) 728, 1333
HpyF10VI GCNNNNNNNGC 8 cut(s) 53, 1004, 1310, 1337, 1387, 1400, 2249, 2261
HpyF3I CTNAG 7 cut(s) 474, 790, 1377, 1686, 1737, 1773, 2535
HpySE526I ACGT 2 cut(s) 728, 1333
HspAI GCGC 4 cut(s) 59, 275, 510, 2738
Ksp22I TGATCA 2 cut(s) 529, 1222
Kzo9I GATC 9 cut(s) 9, 49, 529, 634, 716, 1222, 1238, 1959, 2020
LguI GCTCTTC 3 cut(s) 636, 729, 2321
LmnI GCTCC 6 cut(s) 105, 507, 1016, 1323, 2194, 2279
Lsp1109I GCAGC 7 cut(s) 130, 1327, 1522, 2264, 2267, 2343, 2530
LweI GCATC 6 cut(s) 682, 1514, 1649, 1883, 2176, 2395
MaeI CTAG 6 cut(s) 246, 965, 1008, 1742, 2145, 2316
MaeII ACGT 2 cut(s) 728, 1333
MaeIII GTNAC 3 cut(s) 461, 1892, 2205
MalI GATC 9 cut(s) 11, 51, 531, 636, 718, 1224, 1240, 1961, 2022
MboI GATC 9 cut(s) 9, 49, 529, 634, 716, 1222, 1238, 1959, 2020
MfeI CAATTG 1 cut(s) 2523
MflI RGATCY 2 cut(s) 49, 1959
MhlI GDGCHC 3 cut(s) 102, 741, 2466
MluCI AATT 5 cut(s) 784, 1789, 1816, 2523, 2635
MluI ACGCGT 1 cut(s) 288
MlyI GAGTC 8 cut(s) 13, 277, 1253, 1561, 1675, 2059, 2101, 2357
MmeI TCCRAC 2 cut(s) 711, 1411
Mph1103I ATGCAT 1 cut(s) 1627
MroXI GAANNNNTTC 4 cut(s) 645, 1732, 2376, 2441
MseI TTAA 8 cut(s) 225, 264, 384, 864, 870, 891, 1410, 1563
MslI CAYNNNNRTG 3 cut(s) 1079, 1314, 2263
MspCI CTTAAG 2 cut(s) 224, 863
MspI CCGG 5 cut(s) 103, 1034, 1420, 1821, 1998
MspR9I CCNGG 3 cut(s) 1421, 1968, 1998
MunI CAATTG 1 cut(s) 2523
Mva1269I GAATGC 1 cut(s) 1625
MvaI CCWGG 1 cut(s) 1968
MvnI CGCG 5 cut(s) 14, 61, 82, 277, 290
MwoI GCNNNNNNNGC 8 cut(s) 53, 1004, 1310, 1337, 1387, 1400, 2249, 2261
NciI CCSGG 2 cut(s) 1421, 1998
NcoI CCATGG 1 cut(s) 678
NdeII GATC 9 cut(s) 9, 49, 529, 634, 716, 1222, 1238, 1959, 2020
NlaIV GGNNCC 2 cut(s) 1325, 1354
NmuCI GTSAC 3 cut(s) 461, 1892, 2205
NruI TCGCGA 1 cut(s) 14
NsiI ATGCAT 1 cut(s) 1627
NspI RCATGY 1 cut(s) 1313
OliI CACNNNNGTG 1 cut(s) 1079
PaeR7I CTCGAG 1 cut(s) 740
PagI TCATGA 1 cut(s) 658
PciSI GCTCTTC 3 cut(s) 636, 729, 2321
PcsI WCGNNNNNNNCGW 2 cut(s) 147, 156
PctI GAATGC 1 cut(s) 1625
PdmI GAANNNNTTC 4 cut(s) 645, 1732, 2376, 2441
PflFI GACNNNGTC 1 cut(s) 797
PleI GAGTC 8 cut(s) 12, 276, 1252, 1561, 1674, 2058, 2100, 2356
PpsI GAGTC 8 cut(s) 12, 276, 1252, 1561, 1674, 2058, 2100, 2356
PshAI GACNNNNGTC 1 cut(s) 289
PsiI TTATAA 1 cut(s) 2169
Psp124BI GAGCTC 2 cut(s) 102, 741
Psp6I CCWGG 1 cut(s) 1966
PspGI CCWGG 1 cut(s) 1966
PspN4I GGNNCC 2 cut(s) 1325, 1354
PspPI GGNCC 1 cut(s) 1352
PsrI GAACNNNNNNTAC 4 cut(s) 1776, 1808, 2480, 2512
PstI CTGCAG 1 cut(s) 1405
PstNI CAGNNNCTG 3 cut(s) 629, 797, 1925
PsuI RGATCY 2 cut(s) 49, 1959
PsyI GACNNNGTC 1 cut(s) 797
RruI TCGCGA 1 cut(s) 14
RsaI GTAC 1 cut(s) 1461
RsaNI GTAC 1 cut(s) 1460
RseI CAYNNNNRTG 3 cut(s) 1079, 1314, 2263
SacI GAGCTC 2 cut(s) 102, 741
SapI GCTCTTC 3 cut(s) 636, 729, 2321
SaqAI TTAA 8 cut(s) 225, 264, 384, 864, 870, 891, 1410, 1563
Sau3AI GATC 9 cut(s) 9, 49, 529, 634, 716, 1222, 1238, 1959, 2020
Sau96I GGNCC 1 cut(s) 1352
ScaI AGTACT 1 cut(s) 1461
SchI GAGTC 8 cut(s) 13, 277, 1253, 1561, 1675, 2059, 2101, 2357
ScrFI CCNGG 3 cut(s) 1421, 1968, 1998
SduI GDGCHC 3 cut(s) 102, 741, 2466
SfaNI GCATC 6 cut(s) 682, 1514, 1649, 1883, 2176, 2395
SfcI CTRYAG 5 cut(s) 1290, 1401, 1917, 2247, 2741
Sfr274I CTCGAG 1 cut(s) 740
SinI GGWCC 1 cut(s) 1352
SlaI CTCGAG 1 cut(s) 740
SmiMI CAYNNNNRTG 3 cut(s) 1079, 1314, 2263
SmlI CTYRAG 4 cut(s) 224, 740, 863, 2563
SmoI CTYRAG 4 cut(s) 224, 740, 863, 2563
Sse9I AATT 5 cut(s) 784, 1789, 1816, 2523, 2635
SspMI CTAG 6 cut(s) 246, 965, 1008, 1742, 2145, 2316
SstI GAGCTC 2 cut(s) 102, 741
StyD4I CCNGG 3 cut(s) 1419, 1966, 1996
StyI CCWWGG 1 cut(s) 678
TaaI ACNGT 7 cut(s) 389, 694, 799, 1115, 1560, 1870, 2421
TaiI ACGT 2 cut(s) 731, 1336
TasI AATT 5 cut(s) 784, 1789, 1816, 2523, 2635
TatI WGTACW 1 cut(s) 1459
TauI GCSGC 3 cut(s) 59, 64, 1447
Tru1I TTAA 8 cut(s) 225, 264, 384, 864, 870, 891, 1410, 1563
Tru9I TTAA 8 cut(s) 225, 264, 384, 864, 870, 891, 1410, 1563
TscAI CASTG 4 cut(s) 530, 699, 802, 1563
TseFI GTSAC 3 cut(s) 461, 1892, 2205
TseI GCWGC 7 cut(s) 118, 1340, 1535, 2252, 2255, 2331, 2543
Tsp45I GTSAC 3 cut(s) 461, 1892, 2205
TspGWI ACGGA 4 cut(s) 27, 37, 1091, 2505
TspRI CASTG 4 cut(s) 530, 699, 802, 1563
Tth111I GACNNNGTC 1 cut(s) 797
Vha464I CTTAAG 2 cut(s) 224, 863
VneI GTGCAC 1 cut(s) 2462
VpaK11BI GGWCC 1 cut(s) 1352
XapI RAATTY 2 cut(s) 1789, 2635
XbaI TCTAGA 1 cut(s) 964
XceI RCATGY 1 cut(s) 1313
XhoI CTCGAG 1 cut(s) 740
XmiI GTMKAC 2 cut(s) 801, 1110
XmnI GAANNNNTTC 4 cut(s) 645, 1732, 2376, 2441
XspI CTAG 6 cut(s) 246, 965, 1008, 1742, 2145, 2316
ZrmI AGTACT 1 cut(s) 1461
Zsp2I ATGCAT 1 cut(s) 1627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.