MD03G1199100.v1.1

Bromodomain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0007816
Physical Location & Seq
Forward (+)
27253926 .. 27261985
8060 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1199100.v1.1.491

Sequence Viewer

Length: 3201 bp
ATGGGTCAGATCGTGAGGAGGAAGAAGAAGGGGAGGCCATCGAAGGCAGATCTGGCACGCCGGTCCGGCGAGCTGCCGGCGAAGCCGACGAAGAAAGAGTCGGACGTCCGGCGGAGCCTGCGGCGGAGAAATGTTAAGTACAACATAGACTACGACGACTACTTGGACGAGGATGACGAGGAAGACGAGGAAGAAGACGAGAGGAGGAGAGAGAAGAAGGTGAAGCTGGTGATGAAGCTCGACCAGGCCGGAAACCGTTCGGCGCGTGATTCCCACGCGCAGGATTCTGGCGGCGATGAGGATGAGGAGGACGGCGAGAGTGAGAGGAAGCAGCAGAAGAGGCGCCGGATTAACGGCGGCGATGATTCCGATAAAGACGATGACGGAATTGATGACGACGATGACGGCGATGATGATTGTGAGGAACGGTGTCGAAAAGCTGACTCAAAGCGGCCTGATTCCCCTCCAGGAGCGCCGTCTGATCCAAATGCTGCGATTCCGTTGCCGGATAAGAAAACGTTGGAGTTGATTCTTGACAAGCTTCAAAAGAAAGACACTTACGGTGTATATGCAGAACCAGTTGATCCTGAAGAGCTTCCTGATTATCACGAGGTCATTGAGCGTCCAATGGACTTTGCCACGGTGAGAAAGCAGGTAGCAAACGGATTGTATTCTACACTGGAACAATTTGAGGGTGATGTCTTTTTAATATGTTCAAATGCAATGGAATACAATTCATCAGATACGATATACTATAAACAGGCATGTTCAATACAAGAGCTGGCAAAGAGAAAATTTGATAGGCTGCGAAGTGACTATGAACGCTTGGAAAAGGAGCTCAAATTAGTGCAGAAAACAAAGTCCAATTCTTTGGTCAAGAAACAGACAAAGAAGCCTTTGTGTCGAACATTACAGGAACCCATTGGCTCTGATTTCTCCTCAGGTGCCACTCTTGCCACTGCTGTAGATGTCCAGAACACTTCCCTTCCAACACAAGGTAGTGGTTGTGAGAGACCTAGCAACATTGATGGACCTGTAGAGGGTAATTCCTCTTTGAATGAAGCTAATGTGGAGAAGCCAGAAGATATGTCATCAGGGAAGGGTCTCCTATCGAAAGTTGGGAGGAAGCCATCCGTGGTTGATGAAAACCGCCGTGCAACCTACAACATATCCACTCAGCCCGTGGTCAGATCAGAATCTGTATTTACTACCTTTGACAGTGAAATCAAGCAATTTGTTGCAGTTGGGCTTCATGCAGAATATTCATACGCTAGGAGCCTTGCTCGGTTTTGTGGAAATCTTGGATCTGTTGCTTGGAAAGTTGCGTCAAAGAGGATTGAACAAGCACTACCTGAAGGGTGTAAATTTGGCCGCGGTTGGGTTGGAGAATATGAGCCACTTCCAACCCCTGTATTACTGGTTGAAAATAGTACCCAAAATCAATCTGCTTTGGCTTCAAAGTTTTATTCATGCCTGGAATTGAGAAAGGATGACAGAACTCTTAGGACTTCAGTTCCTGCTAAGGAGCACCCTGTTACAGAAGAGAGACAGCACTCCGTTAGTGTGCCTACTTCAGGAGGGAGGCCATCTTTTCTTGGTTCTACTACTAGGGGGCAGTACTCAGAAGGGAAACCGACTGTGATCCGTCCTGTTGGAGCAAAACCTAATTCCACAGTTAATCAACAGAAAAACCTGCAATCTCAGTTTAGGGAGCCTGAGAAAAAGGTTCAAAAGGAAGTTGAGTTGAACTCCATACCCTCAGTTCATCCACAGAAAAACCCACAATCCCGGTTTATTGAGCCTGCGAAGAAGGTTCAAAAGGCAGTTGAGTTGAACTCTATACCCTCAGTCAATTCGCAGAATAAAATGCAATCCCGGTTTATCGAGCCTGAGAAGACGGTTCAAAAGGAAGTTGAGTTGAACTCCATACCCTCAGTTCATCCACAGAAAAACCTGCAATCCTGGTCTATCAAGCCTGAGAAGAAGGTTCAAAAGGCAGTTGAGTTGAACTCTATACCCTCAGTTAATCCACAGAATAAACTGCAATCCCGGTTTATCGAGTCTGAGAAGGAGGTTCAAAAGGAAGTTGAGTTGAACTCCATACCCTCAGTTCATCCACAGAAAAACCTGCAATCCCGGTTTATCAAGCCTGAGAAGAAGGTTCAAAAGGCAGCTGAGTCGAACTCTATACACTCAGTTAATCCACAGAAAAAACTGCAATCCCGGTTTGTTGAGCCTGAGAAGAAGGTTCAAAAGGAAGTTGAGTTGAACTCTATACCCTCAGTCAATCACAATAATGCCAATCTTGTTGCAGAAAAGCAATCATCAAGAAAATCGGAGGCAGAGGCTTCTAGGCCCAGAGATACAGTATCAAGGAACATGAATCTTCCACAACCTGTACCTTTTAAGATGCCGGATTCTAATGGAAATGTTAACCGAGGGTTGCCTAATGGAAAAAATGTGAGTGCTTCTCTGGACAACCGGATGATTAGTCCATCTGATAGTGCTCATACTCAAATGGATAGGACAGCAGCTTTCTTTCCTCATGGACAGGTGCAGGGTCATAGTGATTCCGTACAGTTTTTGAAAAACTTGGCAGAAAAGAATCAAAAGCAACATAAATCATCAAGTCAAAAGCAACATAAATCGTCAAGTCAATCATCAGTTGATACTCAACCTATTGGGTCATCGGTTCCATCAGTAAGAAGAGATGATTCTGGCAATGCTGCAGCAGCTGCTGCCCGGGCCTGGATGTCTATAGGTGCTGGAGCATTTAATCAGCCTACGGAGGATCTCACTAAACCCAAAAGTCAGATATCTGCAGATTCATTATATAACCCAGCTAGGGATTTTCAGTCACAAATTTCACGAGTTCGTGGGGAGTTTCCAATGCAATTTCAAACTCAGAACAGTTTTTCATTTCCAACCTTTTTACAACAACCTGTTCGTATGGCGAATGAAGCACATTTTCAAGGCCGACCTACAGTTTTTCCTCAGTTGCCAGCAGCTGACTTATCTAGATTTCAGGCGCAATCACCTTGGCGGGGTCTCAGTCCAACTGCTCAGCCAAGACCAAAACAGAAACAGGAAAGCCTTCCTCCAGACTTGAATATTGGTTTCCAGTCCCCTGGGTCTCCGGTAAAACAGTCCTCTAGTCTTCTGGCTGACTCTCAGCAGCCAGACCTGGCGTTGCAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0042393 GO:0070577 GO:0140030 GO:0140033
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain

Protein Analysis

1067

Amino Acids

119.08

Weight (kDa)

8.85

Isoelectric Point (pI)

64.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 177 - 256 3.3e-24 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 108
Acc36I ACCTGC 4 cut(s) 643, 1701, 1962, 2136
AccB1I GGYRCC 2 cut(s) 342, 944
AccII CGCG 3 cut(s) 265, 278, 1374
AclI AACGTT 1 cut(s) 518
AclWI GGATC 5 cut(s) 476, 578, 1312, 1636, 2799
AcoI YGGCCR 1 cut(s) 1369
AcsI RAATTY 3 cut(s) 794, 1364, 2862
AcuI CTGAAG 4 cut(s) 609, 1374, 1494, 1557
AcyI GRCGYC 2 cut(s) 105, 343
AfaI GTAC 5 cut(s) 140, 1432, 1619, 2400, 2577
AfiI CCNNNNNNNGG 8 cut(s) 280, 995, 1040, 1378, 1574, 2748, 2845, 3044
AjnI CCWGG 7 cut(s) 243, 466, 1473, 1961, 2747, 3127, 3183
Alw21I GWGCWC 3 cut(s) 840, 1530, 2509
Alw26I GTCTC 5 cut(s) 1006, 1109, 1540, 3053, 3138
AlwI GGATC 5 cut(s) 476, 578, 1312, 1636, 2799
AlwNI CAGNNNCTG 5 cut(s) 1199, 1517, 2735, 2738, 3008
Ama87I CYCGRG 1 cut(s) 2742
AoxI GGCC 8 cut(s) 35, 246, 452, 1369, 1583, 2354, 2745, 2974
ApoI RAATTY 3 cut(s) 794, 1364, 2862
ArsI GACNNNNNNTTYG 2 cut(s) 83, 115
Asp700I GAANNNNTTC 3 cut(s) 256, 594, 3093
AspLEI GCGC 5 cut(s) 265, 280, 345, 475, 3031
AspS9I GGNCC 4 cut(s) 63, 1031, 2355, 2745
AsuC2I CCSGG 7 cut(s) 1789, 1876, 2050, 2137, 2224, 2743, 2744
AsuHPI GGTGA 5 cut(s) 232, 241, 655, 707, 3027
AvaI CYCGRG 1 cut(s) 2742
AvaII GGWCC 2 cut(s) 63, 1031
AxyI CCTNAGG 1 cut(s) 940
BanI GGYRCC 2 cut(s) 342, 944
BanII GRGCYC 1 cut(s) 840
BauI CACGAG 2 cut(s) 608, 2868
BbsI GAAGAC 4 cut(s) 189, 201, 1901, 3149
Bbv12I GWGCWC 3 cut(s) 840, 1530, 2509
BccI CCATC 6 cut(s) 46, 1022, 1138, 1594, 2503, 2704
BceAI ACGGC 5 cut(s) 328, 370, 421, 460, 1137
BcgI CGANNNNNNTGC 4 cut(s) 484, 518, 2160, 2194
BciT130I CCWGG 7 cut(s) 245, 468, 1475, 1963, 2749, 3129, 3185
BcnI CCSGG 7 cut(s) 1789, 1876, 2050, 2137, 2224, 2743, 2744
BcoDI GTCTC 5 cut(s) 1006, 1109, 1540, 3053, 3138
BfaI CTAG 7 cut(s) 1017, 1272, 1608, 2352, 2844, 3018, 3153
BfmI CTRYAG 6 cut(s) 963, 1035, 2727, 2757, 2820, 2982
BfoI RGCGCY 2 cut(s) 346, 476
BfuAI ACCTGC 4 cut(s) 643, 1701, 1962, 2136
BglI GCCNNNNNGGC 1 cut(s) 66
BglII AGATCT 1 cut(s) 49
BlpI GCTNAGC 1 cut(s) 3063
BmcAI AGTACT 1 cut(s) 1619
Bme18I GGWCC 2 cut(s) 63, 1031
BmeT110I CYCGRG 1 cut(s) 2742
BmgT120I GGNCC 4 cut(s) 63, 1031, 2355, 2745
BmiI GGNNCC 7 cut(s) 116, 344, 918, 946, 1277, 1713, 2694
BmsI GCATC 1 cut(s) 2400
BpiI GAAGAC 4 cut(s) 189, 201, 1901, 3149
BpmI CTGGAG 3 cut(s) 450, 2787, 3084
Bpu10I CCTNAGC 1 cut(s) 1521
Bpu1102I GCTNAGC 1 cut(s) 3063
BpuMI CCSGG 7 cut(s) 1789, 1876, 2050, 2137, 2224, 2743, 2744
BsaBI GATNNNNATC 1 cut(s) 1195
BsaHI GRCGYC 2 cut(s) 105, 343
BsaI GGTCTC 4 cut(s) 1006, 1109, 3053, 3138
BsaJI CCNNGG 9 cut(s) 639, 1134, 1182, 1372, 2437, 2742, 3038, 3127, 3128
BsaWI WCCGGW 2 cut(s) 2481, 3136
Bsc4I CCNNNNNNNGG 8 cut(s) 280, 995, 1040, 1378, 1574, 2748, 2845, 3044
Bse118I RCCGGY 2 cut(s) 60, 76
Bse1I ACTGG 4 cut(s) 578, 684, 1422, 3121
Bse21I CCTNAGG 1 cut(s) 940
Bse3DI GCAATG 2 cut(s) 729, 2728
Bse8I GATNNNNATC 1 cut(s) 1195
BseBI CCWGG 7 cut(s) 245, 468, 1475, 1963, 2749, 3129, 3185
BseDI CCNNGG 9 cut(s) 639, 1134, 1182, 1372, 2437, 2742, 3038, 3127, 3128
BseGI GGATG 9 cut(s) 178, 307, 1130, 1495, 1765, 1939, 2113, 2490, 2757
BseJI GATNNNNATC 1 cut(s) 1195
BseLI CCNNNNNNNGG 8 cut(s) 280, 995, 1040, 1378, 1574, 2748, 2845, 3044
BseMI GCAATG 2 cut(s) 729, 2728
BseNI ACTGG 4 cut(s) 578, 684, 1422, 3121
BseRI GAGGAG 5 cut(s) 31, 217, 220, 320, 928
BseYI CCCAGC 1 cut(s) 2839
BsgI GTGCAG 2 cut(s) 869, 2576
Bsh1236I CGCG 3 cut(s) 265, 278, 1374
BshFI GGCC 8 cut(s) 37, 248, 454, 1371, 1585, 2356, 2747, 2976
BshNI GGYRCC 2 cut(s) 342, 944
BsiHKAI GWGCWC 3 cut(s) 840, 1530, 2509
BsiHKCI CYCGRG 1 cut(s) 2742
BslFI GGGAC 1 cut(s) 3109
BslI CCNNNNNNNGG 8 cut(s) 280, 995, 1040, 1378, 1574, 2748, 2845, 3044
BsmAI GTCTC 5 cut(s) 1006, 1109, 1540, 3053, 3138
BsmFI GGGAC 1 cut(s) 3109
BsnI GGCC 8 cut(s) 37, 248, 454, 1371, 1585, 2356, 2747, 2976
Bso31I GGTCTC 4 cut(s) 1006, 1109, 3053, 3138
BsoBI CYCGRG 1 cut(s) 2742
Bsp1286I GDGCHC 3 cut(s) 840, 1530, 2509
Bsp143I GATC 8 cut(s) 9, 49, 481, 583, 1190, 1304, 1641, 2791
Bsp1720I GCTNAGC 1 cut(s) 3063
BspANI GGCC 8 cut(s) 37, 248, 454, 1371, 1585, 2356, 2747, 2976
BspFNI CGCG 3 cut(s) 265, 278, 1374
BspLI GGNNCC 7 cut(s) 116, 344, 918, 946, 1277, 1713, 2694
BspMAI CTGCAG 2 cut(s) 2731, 2824
BspMI ACCTGC 4 cut(s) 643, 1701, 1962, 2136
BspPI GGATC 5 cut(s) 476, 578, 1312, 1636, 2799
BspQI GCTCTTC 1 cut(s) 585
BspT107I GGYRCC 2 cut(s) 342, 944
BspTNI GGTCTC 4 cut(s) 1006, 1109, 3053, 3138
BsrDI GCAATG 2 cut(s) 729, 2728
BsrFI RCCGGY 2 cut(s) 60, 76
BsrI ACTGG 4 cut(s) 578, 684, 1422, 3121
BssAI RCCGGY 2 cut(s) 60, 76
BssECI CCNNGG 9 cut(s) 639, 1134, 1182, 1372, 2437, 2742, 3038, 3127, 3128
BssMI GATC 8 cut(s) 9, 49, 481, 583, 1190, 1304, 1641, 2791
BssNI GRCGYC 2 cut(s) 105, 343
BssSI CACGAG 2 cut(s) 608, 2868
BssT1I CCWWGG 1 cut(s) 3038
Bst2BI CACGAG 2 cut(s) 608, 2868
Bst2UI CCWGG 7 cut(s) 245, 468, 1475, 1963, 2749, 3129, 3185
Bst6I CTCTTC 4 cut(s) 332, 585, 1536, 2701
BstACI GRCGYC 2 cut(s) 105, 343
BstAPI GCANNNNNTGC 2 cut(s) 2735, 2738
BstC8I GCNNGC 7 cut(s) 58, 71, 78, 119, 783, 1803, 3003
BstDSI CCRYGG 4 cut(s) 639, 1134, 1182, 1372
BstENI CCTNNNNNAGG 1 cut(s) 1572
BstF5I GGATG 9 cut(s) 178, 307, 1130, 1495, 1765, 1939, 2113, 2490, 2757
BstFNI CGCG 3 cut(s) 265, 278, 1374
BstH2I RGCGCY 2 cut(s) 346, 476
BstHHI GCGC 5 cut(s) 265, 280, 345, 475, 3031
BstKTI GATC 8 cut(s) 12, 52, 484, 586, 1193, 1307, 1644, 2794
BstMAI GTCTC 5 cut(s) 1006, 1109, 1540, 3053, 3138
BstMBI GATC 8 cut(s) 9, 49, 481, 583, 1190, 1304, 1641, 2791
BstNI CCWGG 7 cut(s) 245, 468, 1475, 1963, 2749, 3129, 3185
BstNSI RCATGY 1 cut(s) 768
BstSFI CTRYAG 6 cut(s) 963, 1035, 2727, 2757, 2820, 2982
BstUI CGCG 3 cut(s) 265, 278, 1374
BstV2I GAAGAC 4 cut(s) 189, 201, 1901, 3149
BstX2I RGATCY 3 cut(s) 49, 1304, 2791
BstXI CCANNNNNNTGG 2 cut(s) 871, 3128
BstYI RGATCY 3 cut(s) 49, 1304, 2791
Bsu36I CCTNAGG 1 cut(s) 940
BsuRI GGCC 8 cut(s) 37, 248, 454, 1371, 1585, 2356, 2747, 2976
BtgI CCRYGG 4 cut(s) 639, 1134, 1182, 1372
BtgZI GCGATG 3 cut(s) 309, 375, 423
BtsCI GGATG 9 cut(s) 178, 307, 1130, 1495, 1765, 1939, 2113, 2490, 2757
BtsI GCAGTG 1 cut(s) 957
BtsIMutI CAGTG 3 cut(s) 677, 957, 1225
BveI ACCTGC 4 cut(s) 643, 1701, 1962, 2136
Cac8I GCNNGC 7 cut(s) 58, 71, 78, 119, 783, 1803, 3003
CaiI CAGNNNCTG 5 cut(s) 1199, 1517, 2735, 2738, 3008
CfoI GCGC 5 cut(s) 265, 280, 345, 475, 3031
Cfr10I RCCGGY 2 cut(s) 60, 76
Cfr13I GGNCC 4 cut(s) 63, 1031, 2355, 2745
Cfr42I CCGCGG 1 cut(s) 1375
Cfr9I CCCGGG 1 cut(s) 2742
CpoI CGGWCCG 1 cut(s) 63
CseI GACGC 2 cut(s) 611, 1314
Csp6I GTAC 5 cut(s) 139, 1431, 1618, 2399, 2576
CspI CGGWCCG 1 cut(s) 63
CviAII CATG 5 cut(s) 765, 1253, 1470, 2380, 2546
CviQI GTAC 5 cut(s) 139, 1431, 1618, 2399, 2576
DinI GGCGCC 1 cut(s) 344
DpnI GATC 8 cut(s) 11, 51, 483, 585, 1192, 1306, 1643, 2793
DpnII GATC 8 cut(s) 9, 49, 481, 583, 1190, 1304, 1641, 2791
EaeI YGGCCR 1 cut(s) 1369
Eam1104I CTCTTC 4 cut(s) 332, 585, 1536, 2701
EarI CTCTTC 4 cut(s) 332, 585, 1536, 2701
EciI GGCGGA 2 cut(s) 127, 139
Ecl136II GAGCTC 1 cut(s) 838
Eco130I CCWWGG 1 cut(s) 3038
Eco24I GRGCYC 1 cut(s) 840
Eco31I GGTCTC 4 cut(s) 1006, 1109, 3053, 3138
Eco32I GATATC 1 cut(s) 2817
Eco47I GGWCC 2 cut(s) 63, 1031
Eco53kI GAGCTC 1 cut(s) 838
Eco57I CTGAAG 4 cut(s) 609, 1374, 1494, 1557
Eco81I CCTNAGG 1 cut(s) 940
Eco88I CYCGRG 1 cut(s) 2742
EcoICRI GAGCTC 1 cut(s) 838
EcoNI CCTNNNNNAGG 1 cut(s) 1572
EcoRII CCWGG 7 cut(s) 243, 466, 1473, 1961, 2747, 3127, 3183
EcoRV GATATC 1 cut(s) 2817
EcoT14I CCWWGG 1 cut(s) 3038
EcoT38I GRGCYC 1 cut(s) 840
EgeI GGCGCC 1 cut(s) 344
EheI GGCGCC 1 cut(s) 344
ErhI CCWWGG 1 cut(s) 3038
FaeI CATG 5 cut(s) 768, 1256, 1473, 2383, 2549
FaqI GGGAC 1 cut(s) 3109
FatI CATG 5 cut(s) 764, 1252, 1469, 2379, 2545
FauI CCCGC 1 cut(s) 3036
FokI GGATG 9 cut(s) 185, 314, 1117, 1502, 1752, 1926, 2100, 2497, 2764
FriOI GRGCYC 1 cut(s) 840
FspBI CTAG 7 cut(s) 1017, 1272, 1608, 2352, 2844, 3018, 3153
GlaI GCGC 5 cut(s) 264, 279, 344, 474, 3030
GsaI CCCAGC 1 cut(s) 2843
GsuI CTGGAG 3 cut(s) 450, 2787, 3084
HaeII RGCGCY 2 cut(s) 346, 476
HaeIII GGCC 8 cut(s) 37, 248, 454, 1371, 1585, 2356, 2747, 2976
HgaI GACGC 2 cut(s) 611, 1314
HhaI GCGC 5 cut(s) 265, 280, 345, 475, 3031
Hin1I GRCGYC 2 cut(s) 105, 343
Hin1II CATG 5 cut(s) 768, 1256, 1473, 2383, 2549
Hin6I GCGC 5 cut(s) 263, 278, 343, 473, 3029
HinP1I GCGC 5 cut(s) 263, 278, 343, 473, 3029
HincII GTYRAC 1 cut(s) 2434
HindII GTYRAC 1 cut(s) 2434
HindIII AAGCTT 1 cut(s) 539
HpaI GTTAAC 1 cut(s) 2434
HphI GGTGA 5 cut(s) 232, 241, 655, 707, 3027
Hpy166II GTNNAC 1 cut(s) 2434
Hpy8I GTNNAC 1 cut(s) 2434
Hpy99I CGWCG 3 cut(s) 91, 158, 401
HpyCH4IV ACGT 2 cut(s) 105, 518
HpySE526I ACGT 2 cut(s) 105, 518
Hsp92I GRCGYC 2 cut(s) 105, 343
Hsp92II CATG 5 cut(s) 768, 1256, 1473, 2383, 2549
HspAI GCGC 5 cut(s) 263, 278, 343, 473, 3029
KasI GGCGCC 1 cut(s) 342
KroI GCCGGC 1 cut(s) 76
KroNI GCCGGC 1 cut(s) 78
KspAI GTTAAC 1 cut(s) 2434
KspI CCGCGG 1 cut(s) 1375
Kzo9I GATC 8 cut(s) 9, 49, 481, 583, 1190, 1304, 1641, 2791
LguI GCTCTTC 1 cut(s) 585
LmnI GCTCC 8 cut(s) 114, 470, 835, 1275, 1525, 1655, 1711, 2768
LweI GCATC 1 cut(s) 2400
MaeI CTAG 7 cut(s) 1017, 1272, 1608, 2352, 2844, 3018, 3153
MaeII ACGT 2 cut(s) 105, 518
MaeIII GTNAC 3 cut(s) 812, 1534, 2856
MalI GATC 8 cut(s) 11, 51, 483, 585, 1192, 1306, 1643, 2793
MboI GATC 8 cut(s) 9, 49, 481, 583, 1190, 1304, 1641, 2791
MflI RGATCY 3 cut(s) 49, 1304, 2791
MhlI GDGCHC 3 cut(s) 840, 1530, 2509
Mly113I GGCGCC 1 cut(s) 343
MlyI GAGTC 5 cut(s) 107, 437, 2069, 2186, 3161
MmeI TCCRAC 8 cut(s) 81, 501, 1013, 1363, 1427, 1633, 2948, 3080
MroNI GCCGGC 1 cut(s) 76
MroXI GAANNNNTTC 3 cut(s) 256, 594, 3093
MseI TTAA 9 cut(s) 135, 351, 707, 1677, 2025, 2199, 2406, 2433, 2775
MslI CAYNNNNRTG 1 cut(s) 2295
MspA1I CMGCKG 4 cut(s) 1374, 2174, 2735, 3008
MvaI CCWGG 7 cut(s) 245, 468, 1475, 1963, 2749, 3129, 3185
MvnI CGCG 3 cut(s) 265, 278, 1374
NaeI GCCGGC 1 cut(s) 78
NarI GGCGCC 1 cut(s) 343
NciI CCSGG 7 cut(s) 1789, 1876, 2050, 2137, 2224, 2743, 2744
NdeII GATC 8 cut(s) 9, 49, 481, 583, 1190, 1304, 1641, 2791
NgoMIV GCCGGC 1 cut(s) 76
NlaIII CATG 5 cut(s) 768, 1256, 1473, 2383, 2549
NlaIV GGNNCC 7 cut(s) 116, 344, 918, 946, 1277, 1713, 2694
NmuCI GTSAC 2 cut(s) 812, 2856
NspI RCATGY 1 cut(s) 768
PasI CCCWGGG 1 cut(s) 3128
PciSI GCTCTTC 1 cut(s) 585
PcsI WCGNNNNNNNCGW 3 cut(s) 174, 183, 405
PdiI GCCGGC 1 cut(s) 78
PdmI GAANNNNTTC 3 cut(s) 256, 594, 3093
PfoI TCCNGGA 1 cut(s) 466
PleI GAGTC 5 cut(s) 106, 437, 2068, 2185, 3161
PluTI GGCGCC 1 cut(s) 346
PpsI GAGTC 5 cut(s) 106, 437, 2068, 2185, 3161
Psp124BI GAGCTC 1 cut(s) 840
Psp1406I AACGTT 1 cut(s) 518
Psp6I CCWGG 7 cut(s) 243, 466, 1473, 1961, 2747, 3127, 3183
PspFI CCCAGC 1 cut(s) 2839
PspGI CCWGG 7 cut(s) 243, 466, 1473, 1961, 2747, 3127, 3183
PspN4I GGNNCC 7 cut(s) 116, 344, 918, 946, 1277, 1713, 2694
PspPI GGNCC 4 cut(s) 63, 1031, 2355, 2745
PsrI GAACNNNNNNTAC 2 cut(s) 1332, 1364
PstI CTGCAG 2 cut(s) 2731, 2824
PstNI CAGNNNCTG 5 cut(s) 1199, 1517, 2735, 2738, 3008
PsuI RGATCY 3 cut(s) 49, 1304, 2791
PvuII CAGCTG 3 cut(s) 2174, 2735, 3008
RsaI GTAC 5 cut(s) 140, 1432, 1619, 2400, 2577
RsaNI GTAC 5 cut(s) 139, 1431, 1618, 2399, 2576
RseI CAYNNNNRTG 1 cut(s) 2295
Rsr2I CGGWCCG 1 cut(s) 63
RsrII CGGWCCG 1 cut(s) 63
SacI GAGCTC 1 cut(s) 840
SacII CCGCGG 1 cut(s) 1375
SapI GCTCTTC 1 cut(s) 585
SaqAI TTAA 9 cut(s) 135, 351, 707, 1677, 2025, 2199, 2406, 2433, 2775
Sau3AI GATC 8 cut(s) 9, 49, 481, 583, 1190, 1304, 1641, 2791
Sau96I GGNCC 4 cut(s) 63, 1031, 2355, 2745
ScaI AGTACT 1 cut(s) 1619
SchI GAGTC 5 cut(s) 107, 437, 2069, 2186, 3161
SduI GDGCHC 3 cut(s) 840, 1530, 2509
SfaNI GCATC 1 cut(s) 2400
SfcI CTRYAG 6 cut(s) 963, 1035, 2727, 2757, 2820, 2982
SfoI GGCGCC 1 cut(s) 344
Sfr303I CCGCGG 1 cut(s) 1375
SgrBI CCGCGG 1 cut(s) 1375
SinI GGWCC 2 cut(s) 63, 1031
SmaI CCCGGG 1 cut(s) 2744
SmiMI CAYNNNNRTG 1 cut(s) 2295
SrfI GCCCGGGC 1 cut(s) 2744
SspDI GGCGCC 1 cut(s) 342
SspI AATATT 2 cut(s) 1262, 3112
SspMI CTAG 7 cut(s) 1017, 1272, 1608, 2352, 2844, 3018, 3153
SstI GAGCTC 1 cut(s) 840
StyI CCWWGG 1 cut(s) 3038
TaiI ACGT 2 cut(s) 108, 521
TaqI TCGA 8 cut(s) 41, 240, 433, 904, 1112, 1884, 2058, 2180
TatI WGTACW 2 cut(s) 138, 1617
TauI GCSGC 5 cut(s) 124, 294, 360, 454, 1374
Tru1I TTAA 9 cut(s) 135, 351, 707, 1677, 2025, 2199, 2406, 2433, 2775
Tru9I TTAA 9 cut(s) 135, 351, 707, 1677, 2025, 2199, 2406, 2433, 2775
TscAI CASTG 3 cut(s) 684, 964, 1225
TseFI GTSAC 2 cut(s) 812, 2856
Tsp45I GTSAC 2 cut(s) 812, 2856
TspGWI ACGGA 8 cut(s) 399, 489, 678, 1123, 1546, 1634, 2563, 2801
TspMI CCCGGG 1 cut(s) 2742
TspRI CASTG 3 cut(s) 684, 964, 1225
VpaK11BI GGWCC 2 cut(s) 63, 1031
XagI CCTNNNNNAGG 1 cut(s) 1572
XapI RAATTY 3 cut(s) 794, 1364, 2862
XbaI TCTAGA 1 cut(s) 3017
XceI RCATGY 1 cut(s) 768
XcmI CCANNNNNNNNNTGG 1 cut(s) 1180
XmaI CCCGGG 1 cut(s) 2742
XmnI GAANNNNTTC 3 cut(s) 256, 594, 3093
XspI CTAG 7 cut(s) 1017, 1272, 1608, 2352, 2844, 3018, 3153
ZraI GACGTC 1 cut(s) 106
ZrmI AGTACT 1 cut(s) 1619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.