FvH4_3g22980

Bromodomain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0007816
Physical Location & Seq
Reverse (-)
16112708 .. 16119039
6332 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g22980.t1

Sequence Viewer

Length: 2586 bp
ATGGGTCAGATCGTGAGGGGGAAGAAGAAGGGAAGGCCGTCCAAGGCAGATCTGGCTCGCCGCTCCGGCGAATCGCCGGCGGAGGAGCGGGACGTCCGGAGAAGTCTCCGGCGCCGGAATGTGAAGTACACCATAGACTACGACGACTACCTGGACGACGACTCCGAGGACTCCGACGAAGACGAGGAGATTAGAATACAGAAGAAGCTGAAGCTCATGGCCAAGCTCCACCCGGAACAACCACCGCCTCCCCTGGCGCGTAACTCCCACGCGCCGGAGTCGTCGTCGGAATCCGAGGATGAGAGGAAGCCGCCGCTGAAGAAGCGGCCGATCAGTAAGGACGACGACGACGAAGACGAGGATTACGAAGGAAATGACGGCGGTGATGACGACGATGACTGTGAGGAACGGGGTCTGAAGCCACACTCCAAGCAGCTCAATTCCCCTCCAGGAACGCCGTCGGATCATCATCAGGCTGTCACTCCATTGCCGGATAAGAAGACGTTGGAGTTGATTCTCGACAAGCTTCAAAAGAAGGACACTTATGGCGTGTATGCAGAACCTGTTGATCCTGAAGAGCTTCCTGACTATCATGATGTCATTGAGCATCCCATGGATTTCACAACGGTGAGGAAGCAATTGGCAAATGGAACATATTCTACACTAGAACAATTTGAGAGTGATGTCTTTTTAATATGTTCAAATGCAATGCAATACAATTCACCCGAGACGATATACCATAAACAGGCATCATCTATACAAGAGCTAGGGAGGAGAAAATTTGAGAGGTTAAGAATTGACTATGAAAGGTCAGAAAAGGAGGTCAAATTAGTGCAGAAAACAAAGTCAAATTCCTTGGTAAAGAAACCAATAAAGAAGCCTCTGTCCCGAACGTTACAGGAACCTATTGGCTCAGATTTCTCCTCAGGTGCCACTCTTGCCAATGCTGCAGAAGTCCAGAACAGTTCCCATCCAACACAAGGAACTGGTTATGAGAGACCTAGCAACATTGATGGGCCTGTAGAGGGTATTATATCCTTGAATGAAGCTAGTCTAGAGAAAACAGAAGAAATGCTATCAGGGAAGAGTATGCCGAGTATGCCATCTAAAGCTGGGAAGAAGCCATCTGTGCTTGATGACAACCGTCGTGCAACCTATAACATATCTAGTGAGCCTGTGATCACATCAGAATCAATATTCACAACTTTCGAGGGTGAAACTAAGCAGTTTATTGCAGTCGGGCTTCATGCAGAATATGCATATGCCAGGAGCCTGGCTCGATTTTCTGGAAGTCTTGGACCAATTGCTTGGAAAGTTGCATCAAAGAGGATCGAACAGGCCTTACCTGATGGTTGTAAATTTGGTCGTGGATGGGTCGAAGAATATGAGCCACTGCCAACCCCTGTACTGATGGTAAACAAAGTTCCTGCTAAGGATCGCTCTGTTACTAAGCCTGTTATTGAAGAAAGACAGCAATGTGTTAGTGTGCCAACTTCAGCAGGGAGACCATTGTTATTTGGTTCTTCTAGGGGGAATTACTCAGAAGAGAAACACTCTGTCATTAGTTCTGTTGGAACAAAAGGTGGTCATGCAGTTAATGCATTTCATCAGCAGCAAAATCCACAATCCAGATTTATTGAGAGTGGGAAACAGGTCCCAAAGAAAGTTGAGTTGAACTCTGTACCCTCAGCTAATCAAAATAACGCCAACCTTGTTCCAGAAAAGCAATTAGCAAGAAACTCAGAGCCAGCAGCTTCAAGGTCCAGAGGTACAGCATTGAGGAACATGAATATTCCGCAGTCTTTACCTTTCAAGATGCCGGATTCTAATGGTGTTGTTACCTCACGGTTGCCTAATGGGAAAGGTGCCAGTGCTTGTTCGGAGAATCGGATGATTGGTTCTTCTGATAGGGCTCCTAGCCAAATGGAAAGAACTGAAGCTTACTTTCCTCATGCACACGAGCAGGGTCTTAGTGACCCAGTACAGCTGATGAAAAAATTGGCGGAAAAGACACAAAAGCAACAGAACTTATCAACTCAATCGTCAACTGATACTAAACCTGTCATGTCATCGGTTCCATCAACGAGAAGAGACGACCCAAGCAATGCTGCAGCAGCTACTGCCCGTGCTTGGATGTCTATTGGGGGTGGAGCGTTTAAACAGCCAACAGACAATCCCACAGTAGCTAATGGTCAGATCTTTTCAGATTCATTATATAACCCATCCCGAGAGTTTCATTCACAAATTTCACGAGTTCGAGGGGTGGTTCCTAATTCTGGTGCAATGCAATTCCAGACTGAGAACAGTTTTTCATTTCCAACTTTTTTACCACGACCTGTTCATATGGTGAATGAACCGCAGTTCCAAAATCGGCCTATATTTTTCCCTCAGTTAGCAGCAGCTGATTTATCTAGGTTTCAGGTGCCACCCCCTTGGAGGGCTCACAGTCCTTGTGCCCAGCCAAGACAGAAACAGGAATGTCTTCCTCCAGATTTAAATATTGGTTTCCAGTGCCCAGGGTCTCCAGTGAAACAGTCATCTGGTGTTATCGACTCTCAGCAGCCAGACTTGGCTTTGCAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0042393 GO:0070577 GO:0140030 GO:0140033
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain

Protein Analysis

862

Amino Acids

95.44

Weight (kDa)

6.57

Isoelectric Point (pI)

64.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 172 - 251 7.3e-25 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 96
AccB1I GGYRCC 4 cut(s) 111, 929, 1865, 2422
AccBSI CCGCTC 2 cut(s) 63, 88
AccII CGCG 2 cut(s) 259, 272
AccIII TCCGGA 1 cut(s) 96
AclI AACGTT 1 cut(s) 893
AclWI GGATC 4 cut(s) 471, 563, 1337, 1443
AcoI YGGCCR 2 cut(s) 219, 326
AcsI RAATTY 4 cut(s) 779, 850, 1358, 2244
AcuI CTGAAG 6 cut(s) 230, 338, 437, 594, 1479, 1956
AcyI GRCGYC 2 cut(s) 93, 112
AfaI GTAC 5 cut(s) 128, 1407, 1683, 1771, 1983
AfiI CCNNNNNNNGG 8 cut(s) 274, 745, 980, 1025, 2130, 2276, 2436, 2437
AgsI TTSAA 7 cut(s) 530, 702, 1042, 1463, 1675, 1758, 1813
AjnI CCWGG 6 cut(s) 150, 252, 448, 1265, 1272, 2515
AleI CACNNNNGTG 1 cut(s) 626
AloI GAACNNNNNNTCC 4 cut(s) 1882, 1914, 2346, 2378
Alw26I GTCTC 6 cut(s) 110, 722, 991, 1498, 2085, 2526
AlwI GGATC 4 cut(s) 471, 563, 1337, 1443
AlwNI CAGNNNCTG 3 cut(s) 563, 2120, 2402
Ama87I CYCGRG 2 cut(s) 725, 2226
Aor13HI TCCGGA 1 cut(s) 96
AoxI GGCC 6 cut(s) 35, 219, 326, 1016, 1338, 2372
ApoI RAATTY 4 cut(s) 779, 850, 1358, 2244
Asp700I GAANNNNTTC 3 cut(s) 579, 655, 2481
AspLEI GCGC 3 cut(s) 114, 259, 274
AspS9I GGNCC 4 cut(s) 1016, 1298, 1654, 1761
AsuC2I CCSGG 1 cut(s) 233
AsuHPI GGTGA 5 cut(s) 395, 640, 714, 1226, 2359
AvaI CYCGRG 2 cut(s) 725, 2226
AvaII GGWCC 3 cut(s) 1298, 1654, 1761
AxyI CCTNAGG 1 cut(s) 925
BaeGI GKGCMC 2 cut(s) 2458, 2516
BalI TGGCCA 1 cut(s) 221
BanI GGYRCC 4 cut(s) 111, 929, 1865, 2422
BanII GRGCYC 2 cut(s) 1915, 2443
BauI CACGAG 2 cut(s) 1958, 2250
BbsI GAAGAC 4 cut(s) 186, 360, 506, 2474
BbvCI CCTCAGC 1 cut(s) 1687
BccI CCATC 9 cut(s) 978, 1007, 1111, 1132, 1343, 1365, 1405, 2086, 2230
BceAI ACGGC 3 cut(s) 22, 394, 442
BciT130I CCWGG 6 cut(s) 152, 254, 450, 1267, 1274, 2517
BclI TGATCA 1 cut(s) 1179
BcnI CCSGG 1 cut(s) 233
BcoDI GTCTC 6 cut(s) 110, 722, 991, 1498, 2085, 2526
BfaI CTAG 9 cut(s) 665, 767, 1002, 1050, 1055, 1167, 1527, 1917, 2412
BfmI CTRYAG 3 cut(s) 948, 1020, 2109
BfoI RGCGCY 1 cut(s) 115
BglI GCCNNNNNGGC 1 cut(s) 66
BglII AGATCT 2 cut(s) 49, 2196
Bme1390I CCNGG 7 cut(s) 152, 233, 254, 450, 1267, 1274, 2517
Bme18I GGWCC 3 cut(s) 1298, 1654, 1761
BmeT110I CYCGRG 2 cut(s) 725, 2226
BmgT120I GGNCC 4 cut(s) 1016, 1298, 1654, 1761
BmrFI CCNGG 7 cut(s) 152, 233, 254, 450, 1267, 1274, 2517
BmrI ACTGGG 1 cut(s) 1973
BmsI GCATC 4 cut(s) 616, 758, 1328, 1806
BmuI ACTGGG 1 cut(s) 1973
BoxI GACNNNNGTC 1 cut(s) 1143
BpiI GAAGAC 4 cut(s) 186, 360, 506, 2474
BplI GAGNNNNNCTC 6 cut(s) 1261, 1293, 1538, 1570, 1661, 1693
BpmI CTGGAG 3 cut(s) 432, 2472, 2508
Bpu10I CCTNAGC 2 cut(s) 1431, 1687
BpuMI CCSGG 1 cut(s) 233
BsaBI GATNNNNATC 1 cut(s) 468
BsaHI GRCGYC 2 cut(s) 93, 112
BsaI GGTCTC 3 cut(s) 991, 1498, 2526
BsaJI CCNNGG 9 cut(s) 42, 165, 252, 294, 612, 855, 2432, 2515, 2516
BsaWI WCCGGW 1 cut(s) 96
BsaXI ACNNNNNCTCC 4 cut(s) 146, 176, 269, 299
Bsc4I CCNNNNNNNGG 8 cut(s) 274, 745, 980, 1025, 2130, 2276, 2436, 2437
Bse118I RCCGGY 1 cut(s) 76
Bse1I ACTGG 5 cut(s) 991, 1869, 1979, 2509, 2525
Bse21I CCTNAGG 1 cut(s) 925
Bse3DI GCAATG 5 cut(s) 485, 714, 1481, 2110, 2289
Bse8I GATNNNNATC 1 cut(s) 468
BseAI TCCGGA 1 cut(s) 96
BseBI CCWGG 6 cut(s) 152, 254, 450, 1267, 1274, 2517
BseDI CCNNGG 9 cut(s) 42, 165, 252, 294, 612, 855, 2432, 2515, 2516
BseGI GGATG 7 cut(s) 304, 607, 970, 1376, 1896, 2139, 2222
BseJI GATNNNNATC 1 cut(s) 468
BseLI CCNNNNNNNGG 8 cut(s) 274, 745, 980, 1025, 2130, 2276, 2436, 2437
BseMI GCAATG 5 cut(s) 485, 714, 1481, 2110, 2289
BseMII CTCAG 8 cut(s) 927, 939, 1554, 1701, 1755, 2289, 2402, 2570
BseNI ACTGG 5 cut(s) 991, 1869, 1979, 2509, 2525
BseRI GAGGAG 4 cut(s) 98, 200, 787, 913
BseSI GKGCMC 2 cut(s) 2458, 2516
BseX3I CGGCCG 1 cut(s) 326
BseYI CCCAGC 2 cut(s) 1112, 2457
BsgI GTGCAG 1 cut(s) 854
Bsh1236I CGCG 2 cut(s) 259, 272
Bsh1285I CGRYCG 1 cut(s) 329
BshFI GGCC 6 cut(s) 37, 221, 328, 1018, 1340, 2374
BshNI GGYRCC 4 cut(s) 111, 929, 1865, 2422
BsiEI CGRYCG 1 cut(s) 329
BsiHKCI CYCGRG 2 cut(s) 725, 2226
BsiSI CCGG 9 cut(s) 66, 77, 97, 109, 115, 233, 275, 491, 1820
BslFI GGGAC 3 cut(s) 104, 871, 1640
BslI CCNNNNNNNGG 8 cut(s) 274, 745, 980, 1025, 2130, 2276, 2436, 2437
BsmAI GTCTC 6 cut(s) 110, 722, 991, 1498, 2085, 2526
BsmBI CGTCTC 2 cut(s) 722, 2085
BsmFI GGGAC 3 cut(s) 104, 871, 1640
BsnI GGCC 6 cut(s) 37, 221, 328, 1018, 1340, 2374
Bso31I GGTCTC 3 cut(s) 991, 1498, 2526
BsoBI CYCGRG 2 cut(s) 725, 2226
Bsp1286I GDGCHC 4 cut(s) 1915, 2443, 2458, 2516
Bsp13I TCCGGA 1 cut(s) 96
Bsp143I GATC 9 cut(s) 9, 49, 330, 463, 568, 1179, 1329, 1435, 2196
Bsp19I CCATGG 1 cut(s) 612
BspANI GGCC 6 cut(s) 37, 221, 328, 1018, 1340, 2374
BspCNI CTCAG 8 cut(s) 926, 938, 1553, 1700, 1754, 2290, 2401, 2569
BspEI TCCGGA 1 cut(s) 96
BspFNI CGCG 2 cut(s) 259, 272
BspHI TCATGA 1 cut(s) 592
BspMAI CTGCAG 2 cut(s) 952, 2113
BspPI GGATC 4 cut(s) 471, 563, 1337, 1443
BspQI GCTCTTC 1 cut(s) 570
BspT107I GGYRCC 4 cut(s) 111, 929, 1865, 2422
BspTNI GGTCTC 3 cut(s) 991, 1498, 2526
BsrBI CCGCTC 2 cut(s) 63, 88
BsrDI GCAATG 5 cut(s) 485, 714, 1481, 2110, 2289
BsrFI RCCGGY 1 cut(s) 76
BsrI ACTGG 5 cut(s) 991, 1869, 1979, 2509, 2525
BssAI RCCGGY 1 cut(s) 76
BssECI CCNNGG 9 cut(s) 42, 165, 252, 294, 612, 855, 2432, 2515, 2516
BssMI GATC 9 cut(s) 9, 49, 330, 463, 568, 1179, 1329, 1435, 2196
BssNI GRCGYC 2 cut(s) 93, 112
BssSI CACGAG 2 cut(s) 1958, 2250
BssT1I CCWWGG 4 cut(s) 42, 612, 855, 2432
Bst2BI CACGAG 2 cut(s) 1958, 2250
Bst2UI CCWGG 6 cut(s) 152, 254, 450, 1267, 1274, 2517
Bst4CI ACNGT 9 cut(s) 401, 628, 965, 1145, 1848, 2182, 2306, 2447, 2535
Bst6I CTCTTC 4 cut(s) 570, 1079, 1539, 2083
BstACI GRCGYC 2 cut(s) 93, 112
BstAPI GCANNNNNTGC 3 cut(s) 1256, 1598, 2120
BstC8I GCNNGC 3 cut(s) 58, 78, 1749
BstDSI CCRYGG 1 cut(s) 612
BstF5I GGATG 7 cut(s) 304, 607, 970, 1376, 1896, 2139, 2222
BstFNI CGCG 2 cut(s) 259, 272
BstH2I RGCGCY 1 cut(s) 115
BstHHI GCGC 3 cut(s) 114, 259, 274
BstKTI GATC 9 cut(s) 12, 52, 333, 466, 571, 1182, 1332, 1438, 2199
BstMAI GTCTC 6 cut(s) 110, 722, 991, 1498, 2085, 2526
BstMBI GATC 9 cut(s) 9, 49, 330, 463, 568, 1179, 1329, 1435, 2196
BstMCI CGRYCG 1 cut(s) 329
BstNI CCWGG 6 cut(s) 152, 254, 450, 1267, 1274, 2517
BstPAI GACNNNNGTC 1 cut(s) 1143
BstSCI CCNGG 7 cut(s) 150, 231, 252, 448, 1265, 1272, 2515
BstSFI CTRYAG 3 cut(s) 948, 1020, 2109
BstSLI GKGCMC 2 cut(s) 2458, 2516
BstUI CGCG 2 cut(s) 259, 272
BstV2I GAAGAC 4 cut(s) 186, 360, 506, 2474
BstX2I RGATCY 2 cut(s) 49, 2196
BstXI CCANNNNNNTGG 3 cut(s) 1273, 1308, 2433
BstYI RGATCY 2 cut(s) 49, 2196
BstZI CGGCCG 1 cut(s) 326
Bsu36I CCTNAGG 1 cut(s) 925
BsuRI GGCC 6 cut(s) 37, 221, 328, 1018, 1340, 2374
BtgI CCRYGG 1 cut(s) 612
BtsCI GGATG 7 cut(s) 304, 607, 970, 1376, 1896, 2139, 2222
BtsI GCAGTG 1 cut(s) 1391
BtsIMutI CAGTG 4 cut(s) 1391, 1876, 2516, 2532
Cac8I GCNNGC 3 cut(s) 58, 78, 1749
CaiI CAGNNNCTG 3 cut(s) 563, 2120, 2402
CciI TCATGA 1 cut(s) 592
CfoI GCGC 3 cut(s) 114, 259, 274
Cfr10I RCCGGY 1 cut(s) 76
Cfr13I GGNCC 4 cut(s) 1016, 1298, 1654, 1761
Csp6I GTAC 5 cut(s) 127, 1406, 1682, 1770, 1982
CviAII CATG 8 cut(s) 217, 593, 613, 1247, 1589, 1786, 1952, 2065
CviQI GTAC 5 cut(s) 127, 1406, 1682, 1770, 1982
DinI GGCGCC 1 cut(s) 113
DpnI GATC 9 cut(s) 11, 51, 332, 465, 570, 1181, 1331, 1437, 2198
DpnII GATC 9 cut(s) 9, 49, 330, 463, 568, 1179, 1329, 1435, 2196
DraI TTTAAA 2 cut(s) 2158, 2496
EaeI YGGCCR 2 cut(s) 219, 326
EagI CGGCCG 1 cut(s) 326
Eam1104I CTCTTC 4 cut(s) 570, 1079, 1539, 2083
EarI CTCTTC 4 cut(s) 570, 1079, 1539, 2083
EciI GGCGGA 2 cut(s) 95, 2018
EclXI CGGCCG 1 cut(s) 326
Eco130I CCWWGG 4 cut(s) 42, 612, 855, 2432
Eco147I AGGCCT 1 cut(s) 1340
Eco24I GRGCYC 2 cut(s) 1915, 2443
Eco31I GGTCTC 3 cut(s) 991, 1498, 2526
Eco47I GGWCC 3 cut(s) 1298, 1654, 1761
Eco52I CGGCCG 1 cut(s) 326
Eco57I CTGAAG 6 cut(s) 230, 338, 437, 594, 1479, 1956
Eco81I CCTNAGG 1 cut(s) 925
Eco88I CYCGRG 2 cut(s) 725, 2226
EcoO109I RGGNCCY 1 cut(s) 1654
EcoRII CCWGG 6 cut(s) 150, 252, 448, 1265, 1272, 2515
EcoT14I CCWWGG 4 cut(s) 42, 612, 855, 2432
EcoT22I ATGCAT 2 cut(s) 1261, 1603
EcoT38I GRGCYC 2 cut(s) 1915, 2443
EgeI GGCGCC 1 cut(s) 113
EheI GGCGCC 1 cut(s) 113
ErhI CCWWGG 4 cut(s) 42, 612, 855, 2432
Esp3I CGTCTC 2 cut(s) 722, 2085
FaeI CATG 8 cut(s) 220, 596, 616, 1250, 1592, 1789, 1955, 2068
FaqI GGGAC 3 cut(s) 104, 871, 1640
FatI CATG 8 cut(s) 216, 592, 612, 1246, 1588, 1785, 1951, 2064
FauI CCCGC 1 cut(s) 81
FauNDI CATATG 2 cut(s) 1261, 2343
FbaI TGATCA 1 cut(s) 1179
FokI GGATG 7 cut(s) 311, 594, 957, 1383, 1903, 2146, 2209
FriOI GRGCYC 2 cut(s) 1915, 2443
FspBI CTAG 9 cut(s) 665, 767, 1002, 1050, 1055, 1167, 1527, 1917, 2412
GlaI GCGC 3 cut(s) 113, 258, 273
GsaI CCCAGC 2 cut(s) 1116, 2461
GsuI CTGGAG 3 cut(s) 432, 2472, 2508
HaeII RGCGCY 1 cut(s) 115
HaeIII GGCC 6 cut(s) 37, 221, 328, 1018, 1340, 2374
HapII CCGG 9 cut(s) 66, 77, 97, 109, 115, 233, 275, 491, 1820
HhaI GCGC 3 cut(s) 114, 259, 274
Hin1I GRCGYC 2 cut(s) 93, 112
Hin1II CATG 8 cut(s) 220, 596, 616, 1250, 1592, 1789, 1955, 2068
Hin6I GCGC 3 cut(s) 112, 257, 272
HinP1I GCGC 3 cut(s) 112, 257, 272
HincII GTYRAC 1 cut(s) 2046
HindII GTYRAC 1 cut(s) 2046
HindIII AAGCTT 2 cut(s) 524, 1938
HpaII CCGG 9 cut(s) 66, 77, 97, 109, 115, 233, 275, 491, 1820
HphI GGTGA 5 cut(s) 395, 640, 714, 1226, 2359
Hpy166II GTNNAC 3 cut(s) 129, 1417, 2046
Hpy8I GTNNAC 3 cut(s) 129, 1417, 2046
HpyAV CCTTC 4 cut(s) 22, 27, 362, 529
HpyCH4III ACNGT 9 cut(s) 401, 628, 965, 1145, 1848, 2182, 2306, 2447, 2535
HpyCH4IV ACGT 3 cut(s) 93, 503, 893
HpySE526I ACGT 3 cut(s) 93, 503, 893
Hsp92I GRCGYC 2 cut(s) 93, 112
Hsp92II CATG 8 cut(s) 220, 596, 616, 1250, 1592, 1789, 1955, 2068
HspAI GCGC 3 cut(s) 112, 257, 272
KasI GGCGCC 1 cut(s) 111
Kpn2I TCCGGA 1 cut(s) 96
KroI GCCGGC 1 cut(s) 76
KroNI GCCGGC 1 cut(s) 78
Ksp22I TGATCA 1 cut(s) 1179
Kzo9I GATC 9 cut(s) 9, 49, 330, 463, 568, 1179, 1329, 1435, 2196
LguI GCTCTTC 1 cut(s) 570
LmnI GCTCC 6 cut(s) 68, 85, 231, 1269, 1918, 2150
LweI GCATC 4 cut(s) 616, 758, 1328, 1806
MaeI CTAG 9 cut(s) 665, 767, 1002, 1050, 1055, 1167, 1527, 1917, 2412
MaeII ACGT 3 cut(s) 93, 503, 893
MaeIII GTNAC 6 cut(s) 260, 478, 894, 1444, 1837, 1973
MalI GATC 9 cut(s) 11, 51, 332, 465, 570, 1181, 1331, 1437, 2198
MbiI CCGCTC 2 cut(s) 63, 88
MboI GATC 9 cut(s) 9, 49, 330, 463, 568, 1179, 1329, 1435, 2196
MfeI CAATTG 2 cut(s) 638, 1302
MflI RGATCY 2 cut(s) 49, 2196
MhlI GDGCHC 4 cut(s) 1915, 2443, 2458, 2516
MlsI TGGCCA 1 cut(s) 221
MluNI TGGCCA 1 cut(s) 221
Mly113I GGCGCC 1 cut(s) 112
MlyI GAGTC 4 cut(s) 155, 164, 287, 2546
MmeI TCCRAC 7 cut(s) 198, 267, 441, 486, 998, 1552, 2342
Mox20I TGGCCA 1 cut(s) 221
Mph1103I ATGCAT 2 cut(s) 1261, 1603
MreI CGCCGGCG 1 cut(s) 76
MroI TCCGGA 1 cut(s) 96
MroNI GCCGGC 1 cut(s) 76
MroXI GAANNNNTTC 3 cut(s) 579, 655, 2481
MscI TGGCCA 1 cut(s) 221
MseI TTAA 5 cut(s) 692, 791, 1596, 2157, 2495
MslI CAYNNNNRTG 1 cut(s) 626
Msp20I TGGCCA 1 cut(s) 221
MspA1I CMGCKG 3 cut(s) 316, 1987, 2402
MspI CCGG 9 cut(s) 66, 77, 97, 109, 115, 233, 275, 491, 1820
MspR9I CCNGG 7 cut(s) 152, 233, 254, 450, 1267, 1274, 2517
MssI GTTTAAAC 1 cut(s) 2158
MunI CAATTG 2 cut(s) 638, 1302
MvaI CCWGG 6 cut(s) 152, 254, 450, 1267, 1274, 2517
MvnI CGCG 2 cut(s) 259, 272
NaeI GCCGGC 1 cut(s) 78
NarI GGCGCC 1 cut(s) 112
NciI CCSGG 1 cut(s) 233
NcoI CCATGG 1 cut(s) 612
NdeI CATATG 2 cut(s) 1261, 2343
NdeII GATC 9 cut(s) 9, 49, 330, 463, 568, 1179, 1329, 1435, 2196
NgoMIV GCCGGC 1 cut(s) 76
NlaIII CATG 8 cut(s) 220, 596, 616, 1250, 1592, 1789, 1955, 2068
NmeAIII GCCGAG 1 cut(s) 1119
NmuCI GTSAC 2 cut(s) 478, 1973
NsiI ATGCAT 2 cut(s) 1261, 1603
OliI CACNNNNGTG 1 cut(s) 626
PagI TCATGA 1 cut(s) 592
PasI CCCWGGG 1 cut(s) 2516
PceI AGGCCT 1 cut(s) 1340
PciSI GCTCTTC 1 cut(s) 570
PcsI WCGNNNNNNNCGW 4 cut(s) 162, 348, 354, 363
PdiI GCCGGC 1 cut(s) 78
PdmI GAANNNNTTC 3 cut(s) 579, 655, 2481
PfeI GAWTC 7 cut(s) 71, 290, 514, 1190, 1823, 1885, 2207
PfoI TCCNGGA 1 cut(s) 448
PleI GAGTC 4 cut(s) 155, 164, 286, 2546
PluTI GGCGCC 1 cut(s) 115
PmeI GTTTAAAC 1 cut(s) 2158
PpsI GAGTC 4 cut(s) 155, 164, 286, 2546
PpuMI RGGWCCY 1 cut(s) 1654
PshAI GACNNNNGTC 1 cut(s) 1143
Psp1406I AACGTT 1 cut(s) 893
Psp5II RGGWCCY 1 cut(s) 1654
Psp6I CCWGG 6 cut(s) 150, 252, 448, 1265, 1272, 2515
PspFI CCCAGC 2 cut(s) 1112, 2457
PspGI CCWGG 6 cut(s) 150, 252, 448, 1265, 1272, 2515
PspPI GGNCC 4 cut(s) 1016, 1298, 1654, 1761
PspPPI RGGWCCY 1 cut(s) 1654
PsrI GAACNNNNNNTAC 6 cut(s) 643, 675, 1326, 1358, 1407, 1439
PstI CTGCAG 2 cut(s) 952, 2113
PstNI CAGNNNCTG 3 cut(s) 563, 2120, 2402
PsuI RGATCY 2 cut(s) 49, 2196
PvuII CAGCTG 2 cut(s) 1987, 2402
RsaI GTAC 5 cut(s) 128, 1407, 1683, 1771, 1983
RsaNI GTAC 5 cut(s) 127, 1406, 1682, 1770, 1982
RseI CAYNNNNRTG 1 cut(s) 626
SapI GCTCTTC 1 cut(s) 570
SaqAI TTAA 5 cut(s) 692, 791, 1596, 2157, 2495
Sau3AI GATC 9 cut(s) 9, 49, 330, 463, 568, 1179, 1329, 1435, 2196
Sau96I GGNCC 4 cut(s) 1016, 1298, 1654, 1761
SchI GAGTC 4 cut(s) 155, 164, 287, 2546
ScrFI CCNGG 7 cut(s) 152, 233, 254, 450, 1267, 1274, 2517
SduI GDGCHC 4 cut(s) 1915, 2443, 2458, 2516
SfaNI GCATC 4 cut(s) 616, 758, 1328, 1806
SfcI CTRYAG 3 cut(s) 948, 1020, 2109
SfoI GGCGCC 1 cut(s) 113
SgrAI CRCCGGYG 1 cut(s) 76
SinI GGWCC 3 cut(s) 1298, 1654, 1761
SmiI ATTTAAAT 1 cut(s) 2496
SmiMI CAYNNNNRTG 1 cut(s) 626
SseBI AGGCCT 1 cut(s) 1340
SspDI GGCGCC 1 cut(s) 111
SspI AATATT 3 cut(s) 1197, 1792, 2500
SspMI CTAG 9 cut(s) 665, 767, 1002, 1050, 1055, 1167, 1527, 1917, 2412
StuI AGGCCT 1 cut(s) 1340
StyD4I CCNGG 7 cut(s) 150, 231, 252, 448, 1265, 1272, 2515
StyI CCWWGG 4 cut(s) 42, 612, 855, 2432
SwaI ATTTAAAT 1 cut(s) 2496
TaaI ACNGT 9 cut(s) 401, 628, 965, 1145, 1848, 2182, 2306, 2447, 2535
TaiI ACGT 3 cut(s) 96, 506, 896
TaqI TCGA 7 cut(s) 519, 1209, 1279, 1332, 1377, 2257, 2550
TatI WGTACW 3 cut(s) 126, 1405, 1981
TauI GCSGC 4 cut(s) 63, 313, 316, 328
TfiI GAWTC 7 cut(s) 71, 290, 514, 1190, 1823, 1885, 2207
Tru1I TTAA 5 cut(s) 692, 791, 1596, 2157, 2495
Tru9I TTAA 5 cut(s) 692, 791, 1596, 2157, 2495
TscAI CASTG 4 cut(s) 1398, 1876, 2516, 2532
TseFI GTSAC 2 cut(s) 478, 1973
Tsp45I GTSAC 2 cut(s) 478, 1973
TspRI CASTG 4 cut(s) 1398, 1876, 2516, 2532
VpaK11BI GGWCC 3 cut(s) 1298, 1654, 1761
XapI RAATTY 4 cut(s) 779, 850, 1358, 2244
XbaI TCTAGA 1 cut(s) 1054
XcmI CCANNNNNNNNNTGG 1 cut(s) 49
XmnI GAANNNNTTC 3 cut(s) 579, 655, 2481
XspI CTAG 9 cut(s) 665, 767, 1002, 1050, 1055, 1167, 1527, 1917, 2412
ZraI GACGTC 1 cut(s) 94
Zsp2I ATGCAT 2 cut(s) 1261, 1603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.