Bromodomain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G55040 AT5G55040 |
| fragaria_vesca | FvH4_3g22980 FvH4_3g22980 FvH4_3g22980 FvH4_3g22980 FvH4_3g22980 FvH4_3g22980 FvH4_3g22980 |
| malus_domestica | MD03G1199100.v1.1 MD11G1215500.v1.1 |
| prunus_persica | Prupe.4G215800_v2.0.a1 |
| pyrus_communis | pycom03g15070 pycom11g19000 |
| rosa_chinensis | RchiOBHm_Chr5g0040321 |
| rosa_laevigata | RLG00000033971 |
| rosa_multiflora | Rmu_sc0014485.1_g000009 |
| rosa_roxburghii | Rroxscaffold_1G00040990 |
| rosa_rugosa | Rorug05G0184600 |
| rosa_samantha | Rh5AG271600 Rh5BG275500 Rh5CG307700 Rh5DG283700 |
| rosa_wichuraiana | Rw5G025400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 108 |
| Acc36I | ACCTGC | 4 cut(s) | 1674, 1935, 2109, 2377 |
| AccB1I | GGYRCC | 2 cut(s) | 333, 935 |
| AccII | CGCG | 2 cut(s) | 256, 269 |
| AciI | CCGC | 9 cut(s) | 112, 121, 124, 282, 348, 442, 1141, 1754, 3013 |
| AclI | AACGTT | 1 cut(s) | 509 |
| AclWI | GGATC | 6 cut(s) | 467, 569, 1303, 1334, 1609, 2769 |
| AcoI | YGGCCR | 2 cut(s) | 1360, 3132 |
| AcsI | RAATTY | 3 cut(s) | 785, 1355, 2832 |
| AcuI | CTGAAG | 2 cut(s) | 600, 1485 |
| AcyI | GRCGYC | 2 cut(s) | 105, 334 |
| AfaI | GTAC | 3 cut(s) | 140, 1423, 2547 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 482, 986, 1031, 1369, 1768, 2718, 2815, 3014 |
| AjnI | CCWGG | 7 cut(s) | 234, 457, 669, 1529, 1934, 3097, 3153 |
| Alw21I | GWGCWC | 3 cut(s) | 831, 1521, 2479 |
| Alw26I | GTCTC | 5 cut(s) | 997, 1100, 1543, 3023, 3108 |
| AlwI | GGATC | 6 cut(s) | 467, 569, 1303, 1334, 1609, 2769 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1508, 2705 |
| Ama87I | CYCGRG | 2 cut(s) | 1775, 2712 |
| AoxI | GGCC | 8 cut(s) | 35, 237, 443, 1360, 1532, 2327, 2944, 3132 |
| ApoI | RAATTY | 3 cut(s) | 785, 1355, 2832 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 83, 115 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 247, 585, 3063 |
| AspLEI | GCGC | 4 cut(s) | 256, 271, 336, 3001 |
| AspS9I | GGNCC | 3 cut(s) | 63, 1022, 2328 |
| AsuC2I | CCSGG | 8 cut(s) | 1466, 1762, 1849, 2023, 2110, 2197, 2713, 2714 |
| AsuHPI | GGTGA | 5 cut(s) | 223, 232, 646, 698, 2997 |
| AvaI | CYCGRG | 2 cut(s) | 1775, 2712 |
| AvaII | GGWCC | 2 cut(s) | 63, 1022 |
| AxyI | CCTNAGG | 1 cut(s) | 931 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1405, 1438 |
| BanI | GGYRCC | 2 cut(s) | 333, 935 |
| BanII | GRGCYC | 2 cut(s) | 831, 1776 |
| BauI | CACGAG | 2 cut(s) | 599, 2838 |
| BbsI | GAAGAC | 3 cut(s) | 180, 192, 3119 |
| Bbv12I | GWGCWC | 3 cut(s) | 831, 1521, 2479 |
| BccI | CCATC | 7 cut(s) | 46, 1013, 1129, 1340, 2473, 2674, 2980 |
| BceAI | ACGGC | 6 cut(s) | 319, 361, 412, 451, 1128, 1347 |
| BciT130I | CCWGG | 7 cut(s) | 236, 459, 671, 1531, 1936, 3099, 3155 |
| BcnI | CCSGG | 8 cut(s) | 1466, 1762, 1849, 2023, 2110, 2197, 2713, 2714 |
| BcoDI | GTCTC | 5 cut(s) | 997, 1100, 1543, 3023, 3108 |
| BfaI | CTAG | 7 cut(s) | 1008, 1263, 1581, 2325, 2814, 2988, 3123 |
| BfmI | CTRYAG | 7 cut(s) | 954, 1026, 2697, 2727, 2754, 2790, 2952 |
| BfoI | RGCGCY | 1 cut(s) | 337 |
| BfuAI | ACCTGC | 4 cut(s) | 1674, 1935, 2109, 2377 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 66 |
| BglII | AGATCT | 1 cut(s) | 49 |
| BlpI | GCTNAGC | 1 cut(s) | 3033 |
| Bme18I | GGWCC | 2 cut(s) | 63, 1022 |
| BmeT110I | CYCGRG | 2 cut(s) | 1775, 2712 |
| BmgT120I | GGNCC | 3 cut(s) | 63, 1022, 2328 |
| BmiI | GGNNCC | 8 cut(s) | 116, 335, 909, 937, 1268, 1686, 1773, 2664 |
| BmsI | GCATC | 1 cut(s) | 2373 |
| BpiI | GAAGAC | 3 cut(s) | 180, 192, 3119 |
| BpmI | CTGGAG | 3 cut(s) | 441, 2757, 3054 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1512 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3033 |
| BpuMI | CCSGG | 8 cut(s) | 1466, 1762, 1849, 2023, 2110, 2197, 2713, 2714 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1186 |
| BsaHI | GRCGYC | 2 cut(s) | 105, 334 |
| BsaI | GGTCTC | 4 cut(s) | 997, 1100, 3023, 3108 |
| BsaWI | WCCGGW | 2 cut(s) | 2454, 3106 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 482, 986, 1031, 1369, 1768, 2718, 2815, 3014 |
| Bse118I | RCCGGY | 2 cut(s) | 60, 76 |
| Bse1I | ACTGG | 3 cut(s) | 569, 1413, 3091 |
| Bse21I | CCTNAGG | 1 cut(s) | 931 |
| Bse3DI | GCAATG | 2 cut(s) | 720, 2698 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1186 |
| BseBI | CCWGG | 7 cut(s) | 236, 459, 671, 1531, 1936, 3099, 3155 |
| BseGI | GGATG | 7 cut(s) | 298, 1121, 1486, 1738, 1912, 2086, 2727 |
| BseJI | GATNNNNATC | 1 cut(s) | 1186 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 482, 986, 1031, 1369, 1768, 2718, 2815, 3014 |
| BseMI | GCAATG | 2 cut(s) | 720, 2698 |
| BseNI | ACTGG | 3 cut(s) | 569, 1413, 3091 |
| BseRI | GAGGAG | 5 cut(s) | 31, 208, 211, 311, 919 |
| BseYI | CCCAGC | 3 cut(s) | 482, 1368, 2809 |
| BsgI | GTGCAG | 3 cut(s) | 860, 2355, 2546 |
| Bsh1236I | CGCG | 2 cut(s) | 256, 269 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1611 |
| BshFI | GGCC | 8 cut(s) | 37, 239, 445, 1362, 1534, 2329, 2946, 3134 |
| BshNI | GGYRCC | 2 cut(s) | 333, 935 |
| BsiEI | CGRYCG | 1 cut(s) | 1611 |
| BsiHKAI | GWGCWC | 3 cut(s) | 831, 1521, 2479 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1775, 2712 |
| BslFI | GGGAC | 1 cut(s) | 3079 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 482, 986, 1031, 1369, 1768, 2718, 2815, 3014 |
| BsmAI | GTCTC | 5 cut(s) | 997, 1100, 1543, 3023, 3108 |
| BsmFI | GGGAC | 1 cut(s) | 3079 |
| BsnI | GGCC | 8 cut(s) | 37, 239, 445, 1362, 1534, 2329, 2946, 3134 |
| Bso31I | GGTCTC | 4 cut(s) | 997, 1100, 3023, 3108 |
| BsoBI | CYCGRG | 2 cut(s) | 1775, 2712 |
| Bsp1286I | GDGCHC | 4 cut(s) | 831, 1521, 1776, 2479 |
| Bsp1407I | TGTACA | 1 cut(s) | 2545 |
| Bsp143I | GATC | 8 cut(s) | 9, 49, 472, 574, 1295, 1326, 1614, 2761 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3033 |
| BspACI | CCGC | 9 cut(s) | 112, 121, 124, 282, 348, 442, 1141, 1754, 3013 |
| BspANI | GGCC | 8 cut(s) | 37, 239, 445, 1362, 1534, 2329, 2946, 3134 |
| BspFNI | CGCG | 2 cut(s) | 256, 269 |
| BspLI | GGNNCC | 8 cut(s) | 116, 335, 909, 937, 1268, 1686, 1773, 2664 |
| BspMAI | CTGCAG | 2 cut(s) | 2701, 2794 |
| BspMI | ACCTGC | 4 cut(s) | 1674, 1935, 2109, 2377 |
| BspPI | GGATC | 6 cut(s) | 467, 569, 1303, 1334, 1609, 2769 |
| BspQI | GCTCTTC | 1 cut(s) | 576 |
| BspT107I | GGYRCC | 2 cut(s) | 333, 935 |
| BspTNI | GGTCTC | 4 cut(s) | 997, 1100, 3023, 3108 |
| BsrDI | GCAATG | 2 cut(s) | 720, 2698 |
| BsrFI | RCCGGY | 2 cut(s) | 60, 76 |
| BsrGI | TGTACA | 1 cut(s) | 2545 |
| BsrI | ACTGG | 3 cut(s) | 569, 1413, 3091 |
| BssAI | RCCGGY | 2 cut(s) | 60, 76 |
| BssMI | GATC | 8 cut(s) | 9, 49, 472, 574, 1295, 1326, 1614, 2761 |
| BssNI | GRCGYC | 2 cut(s) | 105, 334 |
| BssSI | CACGAG | 2 cut(s) | 599, 2838 |
| BssT1I | CCWWGG | 1 cut(s) | 3008 |
| Bst2BI | CACGAG | 2 cut(s) | 599, 2838 |
| Bst2UI | CCWGG | 7 cut(s) | 236, 459, 671, 1531, 1936, 3099, 3155 |
| Bst6I | CTCTTC | 3 cut(s) | 323, 576, 2671 |
| BstACI | GRCGYC | 2 cut(s) | 105, 334 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2705 |
| BstAUI | TGTACA | 1 cut(s) | 2545 |
| BstC8I | GCNNGC | 5 cut(s) | 58, 71, 78, 119, 774 |
| BstDSI | CCRYGG | 4 cut(s) | 630, 1125, 1173, 1363 |
| BstF5I | GGATG | 7 cut(s) | 298, 1121, 1486, 1738, 1912, 2086, 2727 |
| BstFNI | CGCG | 2 cut(s) | 256, 269 |
| BstH2I | RGCGCY | 1 cut(s) | 337 |
| BstHHI | GCGC | 4 cut(s) | 256, 271, 336, 3001 |
| BstKTI | GATC | 8 cut(s) | 12, 52, 475, 577, 1298, 1329, 1617, 2764 |
| BstMAI | GTCTC | 5 cut(s) | 997, 1100, 1543, 3023, 3108 |
| BstMBI | GATC | 8 cut(s) | 9, 49, 472, 574, 1295, 1326, 1614, 2761 |
| BstMCI | CGRYCG | 1 cut(s) | 1611 |
| BstNI | CCWGG | 7 cut(s) | 236, 459, 671, 1531, 1936, 3099, 3155 |
| BstNSI | RCATGY | 1 cut(s) | 759 |
| BstSFI | CTRYAG | 7 cut(s) | 954, 1026, 2697, 2727, 2754, 2790, 2952 |
| BstUI | CGCG | 2 cut(s) | 256, 269 |
| BstV2I | GAAGAC | 3 cut(s) | 180, 192, 3119 |
| BstX2I | RGATCY | 3 cut(s) | 49, 1295, 2761 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 862, 3098 |
| BstYI | RGATCY | 3 cut(s) | 49, 1295, 2761 |
| Bsu36I | CCTNAGG | 1 cut(s) | 931 |
| BsuRI | GGCC | 8 cut(s) | 37, 239, 445, 1362, 1534, 2329, 2946, 3134 |
| BtgI | CCRYGG | 4 cut(s) | 630, 1125, 1173, 1363 |
| BtgZI | GCGATG | 3 cut(s) | 300, 366, 414 |
| BtsCI | GGATG | 7 cut(s) | 298, 1121, 1486, 1738, 1912, 2086, 2727 |
| BtsI | GCAGTG | 1 cut(s) | 948 |
| BtsIMutI | CAGTG | 2 cut(s) | 948, 1216 |
| BveI | ACCTGC | 4 cut(s) | 1674, 1935, 2109, 2377 |
| Cac8I | GCNNGC | 5 cut(s) | 58, 71, 78, 119, 774 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1508, 2705 |
| CfoI | GCGC | 4 cut(s) | 256, 271, 336, 3001 |
| Cfr10I | RCCGGY | 2 cut(s) | 60, 76 |
| Cfr13I | GGNCC | 3 cut(s) | 63, 1022, 2328 |
| Cfr9I | CCCGGG | 1 cut(s) | 2712 |
| CpoI | CGGWCCG | 1 cut(s) | 63 |
| CseI | GACGC | 3 cut(s) | 554, 602, 1305 |
| Csp6I | GTAC | 3 cut(s) | 139, 1422, 2546 |
| CspI | CGGWCCG | 1 cut(s) | 63 |
| CviAII | CATG | 8 cut(s) | 272, 479, 756, 809, 1244, 1461, 2353, 2516 |
| CviQI | GTAC | 3 cut(s) | 139, 1422, 2546 |
| DinI | GGCGCC | 1 cut(s) | 335 |
| DpnI | GATC | 8 cut(s) | 11, 51, 474, 576, 1297, 1328, 1616, 2763 |
| DpnII | GATC | 8 cut(s) | 9, 49, 472, 574, 1295, 1326, 1614, 2761 |
| EaeI | YGGCCR | 2 cut(s) | 1360, 3132 |
| Eam1104I | CTCTTC | 3 cut(s) | 323, 576, 2671 |
| EarI | CTCTTC | 3 cut(s) | 323, 576, 2671 |
| EciI | GGCGGA | 2 cut(s) | 127, 139 |
| Ecl136II | GAGCTC | 1 cut(s) | 829 |
| Eco130I | CCWWGG | 1 cut(s) | 3008 |
| Eco147I | AGGCCT | 1 cut(s) | 1534 |
| Eco24I | GRGCYC | 2 cut(s) | 831, 1776 |
| Eco31I | GGTCTC | 4 cut(s) | 997, 1100, 3023, 3108 |
| Eco32I | GATATC | 1 cut(s) | 2787 |
| Eco47I | GGWCC | 2 cut(s) | 63, 1022 |
| Eco53kI | GAGCTC | 1 cut(s) | 829 |
| Eco57I | CTGAAG | 2 cut(s) | 600, 1485 |
| Eco81I | CCTNAGG | 1 cut(s) | 931 |
| Eco88I | CYCGRG | 2 cut(s) | 1775, 2712 |
| EcoICRI | GAGCTC | 1 cut(s) | 829 |
| EcoRII | CCWGG | 7 cut(s) | 234, 457, 669, 1529, 1934, 3097, 3153 |
| EcoRV | GATATC | 1 cut(s) | 2787 |
| EcoT14I | CCWWGG | 1 cut(s) | 3008 |
| EcoT38I | GRGCYC | 2 cut(s) | 831, 1776 |
| EgeI | GGCGCC | 1 cut(s) | 335 |
| EheI | GGCGCC | 1 cut(s) | 335 |
| ErhI | CCWWGG | 1 cut(s) | 3008 |
| FaeI | CATG | 8 cut(s) | 275, 482, 759, 812, 1247, 1464, 2356, 2519 |
| FaqI | GGGAC | 1 cut(s) | 3079 |
| FatI | CATG | 8 cut(s) | 271, 478, 755, 808, 1243, 1460, 2352, 2515 |
| FauI | CCCGC | 2 cut(s) | 1761, 3006 |
| FokI | GGATG | 7 cut(s) | 305, 1108, 1493, 1725, 1899, 2073, 2734 |
| FriOI | GRGCYC | 2 cut(s) | 831, 1776 |
| FspBI | CTAG | 7 cut(s) | 1008, 1263, 1581, 2325, 2814, 2988, 3123 |
| GlaI | GCGC | 4 cut(s) | 255, 270, 335, 3000 |
| GsaI | CCCAGC | 3 cut(s) | 486, 1372, 2813 |
| GsuI | CTGGAG | 3 cut(s) | 441, 2757, 3054 |
| HaeII | RGCGCY | 1 cut(s) | 337 |
| HaeIII | GGCC | 8 cut(s) | 37, 239, 445, 1362, 1534, 2329, 2946, 3134 |
| HgaI | GACGC | 3 cut(s) | 554, 602, 1305 |
| HhaI | GCGC | 4 cut(s) | 256, 271, 336, 3001 |
| Hin1I | GRCGYC | 2 cut(s) | 105, 334 |
| Hin1II | CATG | 8 cut(s) | 275, 482, 759, 812, 1247, 1464, 2356, 2519 |
| Hin6I | GCGC | 4 cut(s) | 254, 269, 334, 2999 |
| HinP1I | GCGC | 4 cut(s) | 254, 269, 334, 2999 |
| HincII | GTYRAC | 2 cut(s) | 1414, 2407 |
| HindII | GTYRAC | 2 cut(s) | 1414, 2407 |
| HindIII | AAGCTT | 2 cut(s) | 530, 2319 |
| HpaI | GTTAAC | 1 cut(s) | 2407 |
| HphI | GGTGA | 5 cut(s) | 223, 232, 646, 698, 2997 |
| Hpy166II | GTNNAC | 2 cut(s) | 1414, 2407 |
| Hpy8I | GTNNAC | 2 cut(s) | 1414, 2407 |
| Hpy99I | CGWCG | 3 cut(s) | 91, 158, 392 |
| HpyCH4IV | ACGT | 2 cut(s) | 105, 509 |
| HpySE526I | ACGT | 2 cut(s) | 105, 509 |
| Hsp92I | GRCGYC | 2 cut(s) | 105, 334 |
| Hsp92II | CATG | 8 cut(s) | 275, 482, 759, 812, 1247, 1464, 2356, 2519 |
| HspAI | GCGC | 4 cut(s) | 254, 269, 334, 2999 |
| KasI | GGCGCC | 1 cut(s) | 333 |
| KroI | GCCGGC | 1 cut(s) | 76 |
| KroNI | GCCGGC | 1 cut(s) | 78 |
| KspAI | GTTAAC | 1 cut(s) | 2407 |
| Kzo9I | GATC | 8 cut(s) | 9, 49, 472, 574, 1295, 1326, 1614, 2761 |
| LguI | GCTCTTC | 1 cut(s) | 576 |
| LmnI | GCTCC | 8 cut(s) | 114, 826, 1266, 1516, 1628, 1684, 1771, 2738 |
| LweI | GCATC | 1 cut(s) | 2373 |
| MaeI | CTAG | 7 cut(s) | 1008, 1263, 1581, 2325, 2814, 2988, 3123 |
| MaeII | ACGT | 2 cut(s) | 105, 509 |
| MaeIII | GTNAC | 5 cut(s) | 803, 1525, 1537, 2826, 2967 |
| MalI | GATC | 8 cut(s) | 11, 51, 474, 576, 1297, 1328, 1616, 2763 |
| MboI | GATC | 8 cut(s) | 9, 49, 472, 574, 1295, 1326, 1614, 2761 |
| MflI | RGATCY | 3 cut(s) | 49, 1295, 2761 |
| MhlI | GDGCHC | 4 cut(s) | 831, 1521, 1776, 2479 |
| Mly113I | GGCGCC | 1 cut(s) | 334 |
| MlyI | GAGTC | 4 cut(s) | 107, 428, 2534, 3131 |
| MmeI | TCCRAC | 8 cut(s) | 81, 492, 1004, 1354, 1418, 1606, 2882, 2918 |
| MroNI | GCCGGC | 1 cut(s) | 76 |
| MroXI | GAANNNNTTC | 3 cut(s) | 247, 585, 3063 |
| MslI | CAYNNNNRTG | 2 cut(s) | 270, 2268 |
| MspA1I | CMGCKG | 2 cut(s) | 2702, 2978 |
| MvaI | CCWGG | 7 cut(s) | 236, 459, 671, 1531, 1936, 3099, 3155 |
| MvnI | CGCG | 2 cut(s) | 256, 269 |
| NaeI | GCCGGC | 1 cut(s) | 78 |
| NarI | GGCGCC | 1 cut(s) | 334 |
| NciI | CCSGG | 8 cut(s) | 1466, 1762, 1849, 2023, 2110, 2197, 2713, 2714 |
| NdeII | GATC | 8 cut(s) | 9, 49, 472, 574, 1295, 1326, 1614, 2761 |
| NgoMIV | GCCGGC | 1 cut(s) | 76 |
| NlaIII | CATG | 8 cut(s) | 275, 482, 759, 812, 1247, 1464, 2356, 2519 |
| NlaIV | GGNNCC | 8 cut(s) | 116, 335, 909, 937, 1268, 1686, 1773, 2664 |
| NmuCI | GTSAC | 2 cut(s) | 803, 2826 |
| NspI | RCATGY | 1 cut(s) | 759 |
| PasI | CCCWGGG | 1 cut(s) | 3098 |
| PceI | AGGCCT | 1 cut(s) | 1534 |
| PciSI | GCTCTTC | 1 cut(s) | 576 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 174, 396 |
| PdiI | GCCGGC | 1 cut(s) | 78 |
| PdmI | GAANNNNTTC | 3 cut(s) | 247, 585, 3063 |
| PfoI | TCCNGGA | 1 cut(s) | 457 |
| PleI | GAGTC | 4 cut(s) | 106, 428, 2534, 3131 |
| PluTI | GGCGCC | 1 cut(s) | 337 |
| PpsI | GAGTC | 4 cut(s) | 106, 428, 2534, 3131 |
| Psp124BI | GAGCTC | 1 cut(s) | 831 |
| Psp1406I | AACGTT | 1 cut(s) | 509 |
| Psp6I | CCWGG | 7 cut(s) | 234, 457, 669, 1529, 1934, 3097, 3153 |
| PspFI | CCCAGC | 3 cut(s) | 482, 1368, 2809 |
| PspGI | CCWGG | 7 cut(s) | 234, 457, 669, 1529, 1934, 3097, 3153 |
| PspN4I | GGNNCC | 8 cut(s) | 116, 335, 909, 937, 1268, 1686, 1773, 2664 |
| PspPI | GGNCC | 3 cut(s) | 63, 1022, 2328 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1323, 1355 |
| PstI | CTGCAG | 2 cut(s) | 2701, 2794 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1508, 2705 |
| PsuI | RGATCY | 3 cut(s) | 49, 1295, 2761 |
| PvuII | CAGCTG | 2 cut(s) | 2702, 2978 |
| RsaI | GTAC | 3 cut(s) | 140, 1423, 2547 |
| RsaNI | GTAC | 3 cut(s) | 139, 1422, 2546 |
| RseI | CAYNNNNRTG | 2 cut(s) | 270, 2268 |
| Rsr2I | CGGWCCG | 1 cut(s) | 63 |
| RsrII | CGGWCCG | 1 cut(s) | 63 |
| SacI | GAGCTC | 1 cut(s) | 831 |
| SapI | GCTCTTC | 1 cut(s) | 576 |
| Sau3AI | GATC | 8 cut(s) | 9, 49, 472, 574, 1295, 1326, 1614, 2761 |
| Sau96I | GGNCC | 3 cut(s) | 63, 1022, 2328 |
| SchI | GAGTC | 4 cut(s) | 107, 428, 2534, 3131 |
| SduI | GDGCHC | 4 cut(s) | 831, 1521, 1776, 2479 |
| SfaNI | GCATC | 1 cut(s) | 2373 |
| SfcI | CTRYAG | 7 cut(s) | 954, 1026, 2697, 2727, 2754, 2790, 2952 |
| SfoI | GGCGCC | 1 cut(s) | 335 |
| SinI | GGWCC | 2 cut(s) | 63, 1022 |
| SmaI | CCCGGG | 1 cut(s) | 2714 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 270, 2268 |
| SrfI | GCCCGGGC | 1 cut(s) | 2714 |
| SseBI | AGGCCT | 1 cut(s) | 1534 |
| SsiI | CCGC | 9 cut(s) | 112, 121, 124, 282, 348, 442, 1141, 1754, 3013 |
| SspDI | GGCGCC | 1 cut(s) | 333 |
| SspI | AATATT | 2 cut(s) | 1253, 3082 |
| SspMI | CTAG | 7 cut(s) | 1008, 1263, 1581, 2325, 2814, 2988, 3123 |
| SstI | GAGCTC | 1 cut(s) | 831 |
| StuI | AGGCCT | 1 cut(s) | 1534 |
| StyI | CCWWGG | 1 cut(s) | 3008 |
| TaiI | ACGT | 2 cut(s) | 108, 512 |
| TatI | WGTACW | 2 cut(s) | 138, 2545 |
| TauI | GCSGC | 4 cut(s) | 124, 285, 351, 445 |
| TscAI | CASTG | 2 cut(s) | 955, 1216 |
| TseFI | GTSAC | 2 cut(s) | 803, 2826 |
| Tsp45I | GTSAC | 2 cut(s) | 803, 2826 |
| TspGWI | ACGGA | 5 cut(s) | 390, 480, 669, 1114, 1607 |
| TspMI | CCCGGG | 1 cut(s) | 2712 |
| TspRI | CASTG | 2 cut(s) | 955, 1216 |
| VpaK11BI | GGWCC | 2 cut(s) | 63, 1022 |
| XapI | RAATTY | 3 cut(s) | 785, 1355, 2832 |
| XbaI | TCTAGA | 1 cut(s) | 2987 |
| XceI | RCATGY | 1 cut(s) | 759 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1171 |
| XmaI | CCCGGG | 1 cut(s) | 2712 |
| XmnI | GAANNNNTTC | 3 cut(s) | 247, 585, 3063 |
| XspI | CTAG | 7 cut(s) | 1008, 1263, 1581, 2325, 2814, 2988, 3123 |
| ZraI | GACGTC | 1 cut(s) | 106 |