Rh5CG307700

Bromodomain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0007816
Physical Location & Seq
Reverse (-)
33928377 .. 33934908
6532 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG307700.1

Sequence Viewer

Length: 2166 bp
ATGCTCGACAAGCTTCAAAAGAAAGATACTTATGGCGTGTATGCAGAACCAGTTGATCCTGAAGAGCTTCCTGACTATCATGATGTCATTGAGCATCCCATGGATTTCGCGACGGTGAGGAAGCAGTTGGCAAATGGAGCCTATTCTACACTGGAACAATTTGAGAGAGATGTCTTTTTAATATGTTCAAACGCAATGCAATACAATTCACCTGAGACGATATACCATAAACAGGCATCTTCTATACAAGAGCTAGGAAGGAGAAAATTTGAGAGGTTAAGAATTGACTATGAACGGTTAACCTATGAACGGTCAGAAAAGGAGGTCAAATCAGTGCAGAAAACAAAGTCAAATTCCTTGGTAAAGAAACAGATAAAGAAGCCTCTGTCCCGAACATTACAGGAACCCATTGGCTCTGATTTCTCCTCAGGTGCCACTCTTGCCACTGCTGCCGAAGTCCAGAACAGTTCCCATCCAACACAAGGAGCTGGTTGTGAGAGAGCTAGCAACAATGATGGGCCTGTAGAGGGTAATTCATCCTTGAATGAAGCTAATCTAGAGAAGGCAGAAGAAATGCTATCAGGGAAGAGTCTGCCATCTAAAGTTGGGAAGAAGCCATCTGTGTTTGATGACAACCGTCGTGCAACCTATAACATATCCAATCAGCCTGTGATCACATCAGAATCAATATTCACAACCTTTGAGGGTGAAATCAAGCAGTTTGTTGCAGTCGGGCTTCATGCAGAATATTCATATGCCAGGAGCCTGGCTCGATTCTCTGGAAGTCTTGGACCAGTTGCTTGGAAAGTTGCATCAAAGAGGATTGAACAGGCCTTACCTGATGGATGTAAATTTGGTCGTGGATGGGTCGAAGAATATGAGCCACTTCCAACCCCTGTACTGATGGTAGACAAAGGTACCCAAAATCAATCTGCTTTGGCTGCAAAATTCTTTTCACACAATGAATCAAGAAAGGATGATAGAACTTTAAGGACTTCAGTTCCTGCTAAGGATCGCCCTGTTACTAGGTCTGTTATAGAAGAGAGACAGCACTGTGTTAGTGTTCCTACTTCAGTGGGGAAACCATCATTTTTTGGTTCTTCTAGGGGACATTACTCGGAAGAGAAACCGCCTGTTATTAGTTCTGTCGGAGGAAAAGGTGGTAATGCAGTTAATGCCATTCATAAGCAGCAAAATCCACAATCCAGGTTTATTGAGAGTGGGAAACAGGTTCCGAAGAAAGTTGAGTTGAACTCTGTACCCTCAGTTAATCAAAATAATGCCAACCTTGTTGCTGAAAAGCAATCACCAAGAAACTCAGAGCCAGCAGCTTCAAGGTCCAGAGGTACATCATCGAGGAACATGAATCTTCAGCAGCCTGTACCTTTTAAGATGCCGGATTCTAATGGTGTTATTACCTCACGGTTGCCTAATGGGAAAGGTGTGAGTGCTTGTATGGAGAATCAGATGATTGGTTCTTCTGATAGGGCTCCTAGCCAAATGGAAAGAACTGAAGCTTATTTTCCTCATGCACAGGAGCAGGGTCTTAGTGACCCAGTACAGTTGATGAAAAAATTGGCGGAGAAGACTCAAAAGCAACAGCAGTCATCAATTCAATCGTCAATTGATACTAAACCTGTCGTGTCATCGGTTCCATCAACGAGAAGAGATGATCCAAGCAATGCTGCAGCAGCAGCTGCCCGTGCTTGGATGTCTATAGGGGGTGCATCCTTTAAACAGCCAACAGACAATCCGACAGTGCCCAAAAGTCAGATCTATGCAGATTCATTATATAACCCATCACGAGAGATTAATTCACAAATTTCACGAGTTCGGGGGGAGGTTCCTAATTCTGGTGCAATGCAATTTCAGACTGAGAACAATTTTTCATTTCCAACTTTTTTACCACGACCTGTTCATATGGTGAATGAACCACAGTTTCAAAATCGACCTATATTTTTCCCTCAGTTGGCAGCAGCTGATTTGTCTAGGTTTCAGGTGCCGCCCCCTTGGAGGGGTCTCAGTCCTTGTGCCCAGCCAAGACAGAAACAAGAATGTCTTCCTCCAGATTTAAATATTGGTTTCCAGTCCCCAGGGTCTCCAGTGAAACAGTCATCTGGTGTTATGGTTGACTCTCAGCAGCCAGACCTGGCTTTGCAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0042393 GO:0070577 GO:0140030 GO:0140033
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain

Protein Analysis

721

Amino Acids

79.56

Weight (kDa)

9.05

Isoelectric Point (pI)

62.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 1 - 80 1.9e-24 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 917
AccB1I GGYRCC 3 cut(s) 431, 917, 1999
AccI GTMKAC 1 cut(s) 909
AccII CGCG 1 cut(s) 110
AciI CCGC 3 cut(s) 1130, 1580, 2003
AclWI GGATC 3 cut(s) 50, 1020, 1667
AcsI RAATTY 5 cut(s) 266, 352, 851, 947, 1821
AcuI CTGAAG 5 cut(s) 81, 981, 1056, 1355, 1533
AfaI GTAC 6 cut(s) 900, 919, 1260, 1348, 1383, 1560
AgsI TTSAA 8 cut(s) 17, 189, 544, 827, 1252, 1335, 1616, 1943
AjnI CCWGG 5 cut(s) 758, 765, 1205, 2092, 2148
Alw26I GTCTC 4 cut(s) 209, 1039, 2024, 2103
AlwI GGATC 3 cut(s) 50, 1020, 1667
AlwNI CAGNNNCTG 3 cut(s) 1004, 1697, 1979
AoxI GGCC 2 cut(s) 518, 831
ApoI RAATTY 5 cut(s) 266, 352, 851, 947, 1821
AseI ATTAAT 1 cut(s) 1812
Asp700I GAANNNNTTC 2 cut(s) 66, 2058
Asp718I GGTACC 1 cut(s) 917
AspS9I GGNCC 3 cut(s) 518, 791, 1338
AsuHPI GGTGA 5 cut(s) 127, 201, 719, 1299, 1936
AsuNHI GCTAGC 1 cut(s) 503
AvaII GGWCC 2 cut(s) 791, 1338
AxyI CCTNAGG 1 cut(s) 427
BaeGI GKGCMC 2 cut(s) 1764, 2035
BaeI ACNNNNGTAYC 2 cut(s) 901, 934
BanI GGYRCC 3 cut(s) 431, 917, 1999
BanII GRGCYC 1 cut(s) 1492
BauI CACGAG 2 cut(s) 1803, 1827
BbsI GAAGAC 2 cut(s) 1592, 2051
BciT130I CCWGG 5 cut(s) 760, 767, 1207, 2094, 2150
BclI TGATCA 1 cut(s) 672
BcoDI GTCTC 4 cut(s) 209, 1039, 2024, 2103
BfaI CTAG 7 cut(s) 254, 504, 557, 1026, 1104, 1494, 1989
BfmI CTRYAG 3 cut(s) 522, 1686, 1716
BglII AGATCT 1 cut(s) 1773
Bme1390I CCNGG 5 cut(s) 760, 767, 1207, 2094, 2150
Bme18I GGWCC 2 cut(s) 791, 1338
BmgT120I GGNCC 3 cut(s) 518, 791, 1338
BmrFI CCNGG 5 cut(s) 760, 767, 1207, 2094, 2150
BmrI ACTGGG 1 cut(s) 1550
BmsI GCATC 5 cut(s) 103, 245, 821, 1383, 1736
BmtI GCTAGC 1 cut(s) 507
BmuI ACTGGG 1 cut(s) 1550
BoxI GACNNNNGTC 1 cut(s) 636
BpiI GAAGAC 2 cut(s) 1592, 2051
BplI GAGNNNNNCTC 4 cut(s) 754, 786, 1238, 1270
BpmI CTGGAG 2 cut(s) 2049, 2085
Bpu10I CCTNAGC 1 cut(s) 1008
BsaI GGTCTC 2 cut(s) 2024, 2103
BsaJI CCNNGG 5 cut(s) 99, 357, 2009, 2092, 2093
Bse1I ACTGG 6 cut(s) 50, 156, 794, 1556, 2086, 2102
Bse21I CCTNAGG 1 cut(s) 427
Bse3DI GCAATG 3 cut(s) 201, 1687, 1866
BseBI CCWGG 5 cut(s) 760, 767, 1207, 2094, 2150
BseDI CCNNGG 5 cut(s) 99, 357, 2009, 2092, 2093
BseGI GGATG 8 cut(s) 94, 472, 536, 851, 869, 982, 1716, 1727
BseMI GCAATG 3 cut(s) 201, 1687, 1866
BseMII CTCAG 8 cut(s) 204, 441, 1278, 1332, 1866, 1979, 2035, 2150
BseNI ACTGG 6 cut(s) 50, 156, 794, 1556, 2086, 2102
BseRI GAGGAG 1 cut(s) 415
BseSI GKGCMC 2 cut(s) 1764, 2035
BseYI CCCAGC 1 cut(s) 2034
BsgI GTGCAG 1 cut(s) 356
Bsh1236I CGCG 1 cut(s) 110
BshFI GGCC 2 cut(s) 520, 833
BshNI GGYRCC 3 cut(s) 431, 917, 1999
BsiSI CCGG 1 cut(s) 1397
BslFI GGGAC 3 cut(s) 373, 1122, 2074
BsmAI GTCTC 4 cut(s) 209, 1039, 2024, 2103
BsmBI CGTCTC 1 cut(s) 209
BsmFI GGGAC 3 cut(s) 373, 1122, 2074
BsnI GGCC 2 cut(s) 520, 833
Bso31I GGTCTC 2 cut(s) 2024, 2103
Bsp1286I GDGCHC 3 cut(s) 1492, 1764, 2035
Bsp143I GATC 5 cut(s) 55, 672, 1012, 1672, 1773
Bsp19I CCATGG 1 cut(s) 99
Bsp68I TCGCGA 1 cut(s) 110
BspACI CCGC 3 cut(s) 1130, 1580, 2003
BspANI GGCC 2 cut(s) 520, 833
BspCNI CTCAG 8 cut(s) 205, 440, 1277, 1331, 1867, 1978, 2034, 2149
BspFNI CGCG 1 cut(s) 110
BspHI TCATGA 1 cut(s) 79
BspMAI CTGCAG 1 cut(s) 1690
BspOI GCTAGC 1 cut(s) 507
BspPI GGATC 3 cut(s) 50, 1020, 1667
BspQI GCTCTTC 1 cut(s) 57
BspT107I GGYRCC 3 cut(s) 431, 917, 1999
BspTNI GGTCTC 2 cut(s) 2024, 2103
BsrDI GCAATG 3 cut(s) 201, 1687, 1866
BsrI ACTGG 6 cut(s) 50, 156, 794, 1556, 2086, 2102
BssECI CCNNGG 5 cut(s) 99, 357, 2009, 2092, 2093
BssMI GATC 5 cut(s) 55, 672, 1012, 1672, 1773
BssSI CACGAG 2 cut(s) 1803, 1827
BssT1I CCWWGG 3 cut(s) 99, 357, 2009
Bst2BI CACGAG 2 cut(s) 1803, 1827
Bst2UI CCWGG 5 cut(s) 760, 767, 1207, 2094, 2150
Bst6I CTCTTC 5 cut(s) 57, 581, 1035, 1116, 1660
BstAPI GCANNNNNTGC 2 cut(s) 1175, 1697
BstC8I GCNNGC 2 cut(s) 505, 1326
BstDSI CCRYGG 1 cut(s) 99
BstF5I GGATG 8 cut(s) 94, 472, 536, 851, 869, 982, 1716, 1727
BstFNI CGCG 1 cut(s) 110
BstKTI GATC 5 cut(s) 58, 675, 1015, 1675, 1776
BstMAI GTCTC 4 cut(s) 209, 1039, 2024, 2103
BstMBI GATC 5 cut(s) 55, 672, 1012, 1672, 1773
BstNI CCWGG 5 cut(s) 760, 767, 1207, 2094, 2150
BstPAI GACNNNNGTC 1 cut(s) 636
BstSCI CCNGG 5 cut(s) 758, 765, 1205, 2092, 2148
BstSFI CTRYAG 3 cut(s) 522, 1686, 1716
BstSLI GKGCMC 2 cut(s) 1764, 2035
BstUI CGCG 1 cut(s) 110
BstV2I GAAGAC 2 cut(s) 1592, 2051
BstX2I RGATCY 1 cut(s) 1773
BstXI CCANNNNNNTGG 2 cut(s) 766, 801
BstYI RGATCY 1 cut(s) 1773
Bsu36I CCTNAGG 1 cut(s) 427
BsuRI GGCC 2 cut(s) 520, 833
BtgI CCRYGG 1 cut(s) 99
BtsCI GGATG 8 cut(s) 94, 472, 536, 851, 869, 982, 1716, 1727
BtsI GCAGTG 1 cut(s) 444
BtsIMutI CAGTG 7 cut(s) 149, 339, 444, 1051, 1080, 1764, 2109
BtuMI TCGCGA 1 cut(s) 110
Cac8I GCNNGC 2 cut(s) 505, 1326
CaiI CAGNNNCTG 3 cut(s) 1004, 1697, 1979
CciI TCATGA 1 cut(s) 79
Cfr13I GGNCC 3 cut(s) 518, 791, 1338
Csp6I GTAC 6 cut(s) 899, 918, 1259, 1347, 1382, 1559
CviAII CATG 5 cut(s) 80, 100, 740, 1363, 1529
CviQI GTAC 6 cut(s) 899, 918, 1259, 1347, 1382, 1559
DpnI GATC 5 cut(s) 57, 674, 1014, 1674, 1775
DpnII GATC 5 cut(s) 55, 672, 1012, 1672, 1773
DraI TTTAAA 2 cut(s) 1735, 2073
Eam1104I CTCTTC 5 cut(s) 57, 581, 1035, 1116, 1660
EarI CTCTTC 5 cut(s) 57, 581, 1035, 1116, 1660
EciI GGCGGA 1 cut(s) 1595
Eco130I CCWWGG 3 cut(s) 99, 357, 2009
Eco147I AGGCCT 1 cut(s) 833
Eco24I GRGCYC 1 cut(s) 1492
Eco31I GGTCTC 2 cut(s) 2024, 2103
Eco47I GGWCC 2 cut(s) 791, 1338
Eco57I CTGAAG 5 cut(s) 81, 981, 1056, 1355, 1533
Eco81I CCTNAGG 1 cut(s) 427
EcoRII CCWGG 5 cut(s) 758, 765, 1205, 2092, 2148
EcoT14I CCWWGG 3 cut(s) 99, 357, 2009
EcoT38I GRGCYC 1 cut(s) 1492
ErhI CCWWGG 3 cut(s) 99, 357, 2009
Esp3I CGTCTC 1 cut(s) 209
FaeI CATG 5 cut(s) 83, 103, 743, 1366, 1532
FalI AAGNNNNNCTT 2 cut(s) 2043, 2075
FaqI GGGAC 3 cut(s) 373, 1122, 2074
FatI CATG 5 cut(s) 79, 99, 739, 1362, 1528
FauNDI CATATG 2 cut(s) 754, 1920
FbaI TGATCA 1 cut(s) 672
FblI GTMKAC 1 cut(s) 909
FokI GGATG 8 cut(s) 81, 459, 523, 858, 876, 989, 1714, 1723
FriOI GRGCYC 1 cut(s) 1492
FspBI CTAG 7 cut(s) 254, 504, 557, 1026, 1104, 1494, 1989
GsaI CCCAGC 1 cut(s) 2038
GsuI CTGGAG 2 cut(s) 2049, 2085
HaeIII GGCC 2 cut(s) 520, 833
HapII CCGG 1 cut(s) 1397
Hin1II CATG 5 cut(s) 83, 103, 743, 1366, 1532
HincII GTYRAC 2 cut(s) 300, 2131
HindII GTYRAC 2 cut(s) 300, 2131
HindIII AAGCTT 2 cut(s) 11, 1515
HpaI GTTAAC 1 cut(s) 300
HpaII CCGG 1 cut(s) 1397
HphI GGTGA 5 cut(s) 127, 201, 719, 1299, 1936
Hpy166II GTNNAC 3 cut(s) 300, 910, 2131
Hpy8I GTNNAC 3 cut(s) 300, 910, 2131
Hpy99I CGWCG 2 cut(s) 115, 642
HpyAV CCTTC 2 cut(s) 252, 556
Hsp92II CATG 5 cut(s) 83, 103, 743, 1366, 1532
KpnI GGTACC 1 cut(s) 921
Ksp22I TGATCA 1 cut(s) 672
KspAI GTTAAC 1 cut(s) 300
Kzo9I GATC 5 cut(s) 55, 672, 1012, 1672, 1773
LguI GCTCTTC 1 cut(s) 57
LmnI GCTCC 5 cut(s) 137, 485, 762, 1495, 1537
LweI GCATC 5 cut(s) 103, 245, 821, 1383, 1736
MaeI CTAG 7 cut(s) 254, 504, 557, 1026, 1104, 1494, 1989
MaeIII GTNAC 2 cut(s) 1021, 1550
MalI GATC 5 cut(s) 57, 674, 1014, 1674, 1775
MboI GATC 5 cut(s) 55, 672, 1012, 1672, 1773
MfeI CAATTG 1 cut(s) 1623
MflI RGATCY 1 cut(s) 1773
MhlI GDGCHC 3 cut(s) 1492, 1764, 2035
MlyI GAGTC 3 cut(s) 598, 1582, 2126
MmeI TCCRAC 5 cut(s) 500, 914, 1129, 1778, 1919
MroXI GAANNNNTTC 2 cut(s) 66, 2058
MspA1I CMGCKG 2 cut(s) 1697, 1979
MspI CCGG 1 cut(s) 1397
MspR9I CCNGG 5 cut(s) 760, 767, 1207, 2094, 2150
MunI CAATTG 1 cut(s) 1623
MvaI CCWGG 5 cut(s) 760, 767, 1207, 2094, 2150
MvnI CGCG 1 cut(s) 110
NcoI CCATGG 1 cut(s) 99
NdeI CATATG 2 cut(s) 754, 1920
NdeII GATC 5 cut(s) 55, 672, 1012, 1672, 1773
NheI GCTAGC 1 cut(s) 503
NlaIII CATG 5 cut(s) 83, 103, 743, 1366, 1532
NmuCI GTSAC 1 cut(s) 1550
NruI TCGCGA 1 cut(s) 110
PagI TCATGA 1 cut(s) 79
PasI CCCWGGG 1 cut(s) 2093
PceI AGGCCT 1 cut(s) 833
PciSI GCTCTTC 1 cut(s) 57
PdmI GAANNNNTTC 2 cut(s) 66, 2058
PfeI GAWTC 7 cut(s) 683, 774, 965, 1366, 1400, 1462, 1784
PleI GAGTC 3 cut(s) 597, 1582, 2126
PpsI GAGTC 3 cut(s) 597, 1582, 2126
PshAI GACNNNNGTC 1 cut(s) 636
PshBI ATTAAT 1 cut(s) 1812
Psp6I CCWGG 5 cut(s) 758, 765, 1205, 2092, 2148
PspFI CCCAGC 1 cut(s) 2034
PspGI CCWGG 5 cut(s) 758, 765, 1205, 2092, 2148
PspPI GGNCC 3 cut(s) 518, 791, 1338
PsrI GAACNNNNNNTAC 2 cut(s) 819, 851
PstI CTGCAG 1 cut(s) 1690
PstNI CAGNNNCTG 3 cut(s) 1004, 1697, 1979
PsuI RGATCY 1 cut(s) 1773
PvuII CAGCTG 2 cut(s) 1697, 1979
RruI TCGCGA 1 cut(s) 110
RsaI GTAC 6 cut(s) 900, 919, 1260, 1348, 1383, 1560
RsaNI GTAC 6 cut(s) 899, 918, 1259, 1347, 1382, 1559
SapI GCTCTTC 1 cut(s) 57
Sau3AI GATC 5 cut(s) 55, 672, 1012, 1672, 1773
Sau96I GGNCC 3 cut(s) 518, 791, 1338
SchI GAGTC 3 cut(s) 598, 1582, 2126
ScrFI CCNGG 5 cut(s) 760, 767, 1207, 2094, 2150
SduI GDGCHC 3 cut(s) 1492, 1764, 2035
SfaNI GCATC 5 cut(s) 103, 245, 821, 1383, 1736
SfcI CTRYAG 3 cut(s) 522, 1686, 1716
SinI GGWCC 2 cut(s) 791, 1338
SmiI ATTTAAAT 1 cut(s) 2073
SseBI AGGCCT 1 cut(s) 833
SsiI CCGC 3 cut(s) 1130, 1580, 2003
SspI AATATT 3 cut(s) 690, 749, 2077
SspMI CTAG 7 cut(s) 254, 504, 557, 1026, 1104, 1494, 1989
StuI AGGCCT 1 cut(s) 833
StyD4I CCNGG 5 cut(s) 758, 765, 1205, 2092, 2148
StyI CCWWGG 3 cut(s) 99, 357, 2009
SwaI ATTTAAAT 1 cut(s) 2073
TaqI TCGA 5 cut(s) 6, 772, 870, 1355, 1948
TatI WGTACW 2 cut(s) 898, 1558
TauI GCSGC 1 cut(s) 2005
TfiI GAWTC 7 cut(s) 683, 774, 965, 1366, 1400, 1462, 1784
TscAI CASTG 7 cut(s) 156, 339, 451, 1058, 1080, 1764, 2109
TseFI GTSAC 1 cut(s) 1550
Tsp45I GTSAC 1 cut(s) 1550
TspRI CASTG 7 cut(s) 156, 339, 451, 1058, 1080, 1764, 2109
VpaK11BI GGWCC 2 cut(s) 791, 1338
VspI ATTAAT 1 cut(s) 1812
XapI RAATTY 5 cut(s) 266, 352, 851, 947, 1821
XbaI TCTAGA 1 cut(s) 556
XmiI GTMKAC 1 cut(s) 909
XmnI GAANNNNTTC 2 cut(s) 66, 2058
XspI CTAG 7 cut(s) 254, 504, 557, 1026, 1104, 1494, 1989
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.