MD11G1215500.v1.1

Bromodomain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0007816
Physical Location & Seq
Forward (+)
31476161 .. 31482158
5998 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1215500.v1.1.491

Sequence Viewer

Length: 2844 bp
ATGGGTCAGATCGTGAGGAGGAAGAAGAAGGGGAGGCCATCGAAGGCAGATCTGGCTCGCCGGTACAACGAGCTGCCGGAAAAACCGACAAAGAAAGAGTCGGACGTCCGGCGGAGCCTCCGACGGAGAAATGTGAAGTACAATATCGACTACGACGACTACGTGGAGGAGGAAGACGAGGAAGACGAAGAAGAAGACGAGAGGAGGAGGGAGAAGAAGGTGAAGCTGGTGATGAAGCTCGACCAGAGGGGAAATGGCTCGGCGCGTGACTCCCACGCGCAGGAGTCGGGCGGCGAGGAGGATGAGGAGGACGGCCAGAGTGAGAGGAAGCAGCTGAAGAGGCGCCGGATTAACGGCGGCGATGATTCCGATAGAGATGATGACGGAAATGATGACGACGATGAGGGGGATGATGATTGCGAGGAACGGGGTCGGAAGGCTGACTCGAAGCGGCCTGATTCCCCTCCAGGAACGCCGTATGATCCTCATGCCGTGATTCCATTGCCGGATAAGAAAATGTTGGAGTTGATTCTTGACAAGCTTCAAAAGAAAGACACTTACGGTGTATATGCAGAACCAGTTGATCCTGAAGAACTTCCTGATTATCATGAGGTCATTGAGCGTCCAATGGACTTTGCCACAGTGAGAAAGCAGTTAGCAAACGGATCGTATTCTACACTGGAACAATTTGAGGGTGATGTCTTTCTAATATGTTCAAATGCAATGGAATACAATTCATCAGATACGATATACTATAAACAGGCATGTTCAATACAAGAGCTGGCAAAGAGAAAATTTGATAGGTTGCGAAGTAACTATGAACGCACGAAAAAGGAGCTCAAATTAGTGCAGAAAACAAAGGCCAATTCCTTAGTCAAGAAACAGATAAAGAAGCCTTTGTCCAGAACATTACAGGAACCCATTGGCTCTGATTTCTCCTCAGGTGCCACTCTTGCTACTGCTGTAGATGTCCAGAATGTTTCCCTTCCAGTTCCAACACAGGGTGGTGGTTGTGAGAGACCTAGCAACATTGACGGACCTGTAGAGGGTAATTCCTCTTTGAATGAAGCTAATGTGGAGAAGGCAGAAGATATGTCATCAGGGAAGGGTCTCCTATCGAAAGTTGGGAGGAAGCCATCTGTGGTTGATGAGAATCGCCGTGCAACCTACAATATTTCCACTCAGCCAGTGGTCAGATCAGAATCAGTATTTACTACTTTTGACGGTGAAATCAAGCAATTTGTTGCAGTTGGGCTTCATGCAGAATATTCATATGCTAGGAGCCTTGCTCGTTTTTCTGGAAGTCTTGGATCCCTTGCTTGGAAAATTGCATCAAAGAGGATTGAACAAGCACTACCTGATGGGTGTAAATTTGGCCGTGGTTGGGTTGGAGAATTTGAGCCACTTCCAACCCCTGTATTACTGGTCGAAAATAGTACCCAAAATCAATCAGCTTTGGCTTCAAAGTTTTATTCATGCCTGGAATTGAGAAAGGATGACAGAACTCTCAGGACTTCAGTTCCTGCTAAGCAGCACCCTGTGACTAGGCCTGTTACAGAAGAGAGACAACACTCTGTTAGTGTGCCTACTTCAGGAGGGAGACCACCATTTCTTGATTCTCCTAGGGGGCATTACTCAGAAGGGAAACCGACTGTGATCCGTCCTGTTGGAGCAAAACCTAATTCCACAGTCAATCCACAGAAAAACCTGCAATCCCGGTTTATCGAGCGTGAGAAAAAGGTTCAAAAGGAAGTTGAGTTGAACTCCGTACCCTTAGTTCATCCACAGAAAAACCTGCAATCCCGGTTTATCGAGCCTGAGAAGAAGGTGCAAGAAGCAGTTGAGTTGAACTCTATACCTTCAGTTAATCCACCGAAAAACCTGCAATCTCGGTTTATTGAGCCTGAAAAGAAGGTTCAAAAGGAAGTTGAGTTGAACTCTATACCGTCAGTCAATCAAAATAATGCCAATCTTATTGCAGAAAAGCAATCATCAAGACGATCGGAGGCAGAAGCTTCCAGGCCCAGAGATACAGTTTCAAGGAACATAAATCTTCCACAACCTGTACCTTGTACGATGCCGGATTCTAATGGAACTGTTAACCGAGGGTTGCCTAATGGGAAATATGTGAGTGCGTGTCTGGACAACCGGATGATTAGTCCATCTGACAGTGATCATAGTCAAATGGATAGAACAGCAGCTTTCTTTCCTCATAAACAGGTGCAGGGTCTTAGCGACCCTGTACAGTTAATGAAAAAGCTGGCCGAAAGTAATCAAAAGCAACAGAAATCGTCAAGTCAATCATCAATTGATACTCAACCCGTTGGGTCATCGGTTCCATCAATAAGAAGAGATGATTCAGGCAATGCTGCAGCAGCTGCTGCTCGGGCTTGGATGTCTATAGGCGCTGGAACATTTAATCAGCCTACGGAGGATCTCACTACACCCAAAAGTCAGATATCTGCAGATTCATTATACAACCCAGCCCGGGACTTTCAGCCACAAATTTCACGAGTTCGGGGTGAGTTTCCAACGCAATTTCAGAATCAGAACAGCTTTTCATTTCCAACATTTTTACAGCAACCTGTTCGTATGGCGAATGAAGCACAGTTTCAAGGCCGACCTACAATTTTTCCACAGTTGGCAGCAGCTGACTTGTCTAGATTTCAAGCGCAGTCACCTTGGCGAGGTCTCAGTCAACATGCTCAGCCAAGACCAAGACAGAAACAGGAAAGCCTTCCTCCAGACTTGAATATCGGTTTCCAGTCCCCAGGGTCTCCGGTGAAACAGTCCTCTAGTCTTCTGGTCGACTCTCAGCAGCCGGACCTGGCGTTGCAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0042393 GO:0070577 GO:0140030 GO:0140033
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain

Protein Analysis

948

Amino Acids

105.9

Weight (kDa)

8.14

Isoelectric Point (pI)

69.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 177 - 256 8.5e-25 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 108
Acc36I ACCTGC 3 cut(s) 1716, 1803, 1890
AccB1I GGYRCC 2 cut(s) 342, 944
AccI GTMKAC 1 cut(s) 2808
AccII CGCG 2 cut(s) 265, 278
AciI CCGC 4 cut(s) 112, 291, 357, 451
AclWI GGATC 7 cut(s) 476, 578, 673, 1305, 1318, 1651, 2442
AcoI YGGCCR 3 cut(s) 313, 1375, 2262
AcsI RAATTY 4 cut(s) 794, 1370, 1394, 2505
AcuI CTGAAG 5 cut(s) 356, 609, 1500, 1575, 1845
AcyI GRCGYC 2 cut(s) 105, 343
AdeI CACNNNGTG 2 cut(s) 1004, 1540
AfaI GTAC 7 cut(s) 65, 140, 1438, 1770, 2067, 2074, 2244
AfiI CCNNNNNNNGG 8 cut(s) 280, 1001, 1046, 1320, 1384, 1592, 2488, 2687
AjnI CCWGG 5 cut(s) 466, 1479, 2018, 2770, 2826
Alw21I GWGCWC 1 cut(s) 840
Alw26I GTCTC 6 cut(s) 1012, 1115, 1558, 1594, 2696, 2781
AlwI GGATC 7 cut(s) 476, 578, 673, 1305, 1318, 1651, 2442
AlwNI CAGNNNCTG 4 cut(s) 1523, 2378, 2381, 2651
Ama87I CYCGRG 2 cut(s) 2385, 2487
AoxI GGCC 9 cut(s) 35, 313, 452, 861, 1375, 1547, 2021, 2262, 2617
ApoI RAATTY 4 cut(s) 794, 1370, 1394, 2505
ArsI GACNNNNNNTTYG 2 cut(s) 83, 115
Asp700I GAANNNNTTC 2 cut(s) 594, 2736
AspA2I CCTAGG 1 cut(s) 1622
AspLEI GCGC 5 cut(s) 265, 280, 345, 2408, 2674
AspS9I GGNCC 3 cut(s) 1037, 2022, 2824
AsuC2I CCSGG 4 cut(s) 1717, 1804, 2488, 2489
AsuHPI GGTGA 7 cut(s) 232, 241, 707, 1238, 2534, 2670, 2794
AvaI CYCGRG 2 cut(s) 2385, 2487
AvaII GGWCC 2 cut(s) 1037, 2824
AvrII CCTAGG 1 cut(s) 1622
AxyI CCTNAGG 1 cut(s) 940
BamHI GGATCC 1 cut(s) 1310
BanI GGYRCC 2 cut(s) 342, 944
BanII GRGCYC 1 cut(s) 840
BauI CACGAG 1 cut(s) 2511
BbsI GAAGAC 4 cut(s) 180, 189, 201, 2792
Bbv12I GWGCWC 1 cut(s) 840
BccI CCATC 5 cut(s) 46, 1144, 1355, 2170, 2347
BceAI ACGGC 6 cut(s) 328, 370, 460, 476, 1143, 1362
BcgI CGANNNNNNTGC 6 cut(s) 648, 682, 1864, 1898, 2570, 2604
BciT130I CCWGG 5 cut(s) 468, 1481, 2020, 2772, 2828
BclI TGATCA 1 cut(s) 2173
BcnI CCSGG 4 cut(s) 1717, 1804, 2488, 2489
BcoDI GTCTC 6 cut(s) 1012, 1115, 1558, 1594, 2696, 2781
BfaI CTAG 6 cut(s) 1023, 1278, 1545, 1623, 2661, 2796
BfmI CTRYAG 5 cut(s) 963, 1041, 2370, 2400, 2463
BfoI RGCGCY 2 cut(s) 346, 2409
BfuAI ACCTGC 3 cut(s) 1716, 1803, 1890
BglII AGATCT 1 cut(s) 49
BlnI CCTAGG 1 cut(s) 1622
BlpI GCTNAGC 2 cut(s) 1527, 2706
Bme1390I CCNGG 9 cut(s) 468, 1481, 1717, 1804, 2020, 2488, 2489, 2772, 2828
Bme18I GGWCC 2 cut(s) 1037, 2824
BmeT110I CYCGRG 2 cut(s) 2385, 2487
BmgT120I GGNCC 3 cut(s) 1037, 2022, 2824
BmiI GGNNCC 7 cut(s) 116, 344, 918, 946, 1283, 1312, 2337
BmrFI CCNGG 9 cut(s) 468, 1481, 1717, 1804, 2020, 2488, 2489, 2772, 2828
BmsI GCATC 2 cut(s) 1340, 2067
BpiI GAAGAC 4 cut(s) 180, 189, 201, 2792
BplI GAGNNNNNCTC 8 cut(s) 1273, 1305, 1748, 1780, 1835, 1867, 1922, 1954
BpmI CTGGAG 2 cut(s) 450, 2727
Bpu1102I GCTNAGC 2 cut(s) 1527, 2706
BpuMI CCSGG 4 cut(s) 1717, 1804, 2488, 2489
BsaAI YACGTR 1 cut(s) 163
BsaBI GATNNNNATC 2 cut(s) 1152, 1201
BsaHI GRCGYC 2 cut(s) 105, 343
BsaI GGTCTC 5 cut(s) 1012, 1115, 1594, 2696, 2781
BsaJI CCNNGG 7 cut(s) 1378, 1622, 2104, 2487, 2681, 2770, 2771
BsaWI WCCGGW 2 cut(s) 2148, 2779
Bsc4I CCNNNNNNNGG 8 cut(s) 280, 1001, 1046, 1320, 1384, 1592, 2488, 2687
Bse118I RCCGGY 1 cut(s) 60
Bse1I ACTGG 6 cut(s) 578, 684, 989, 1187, 1428, 2764
Bse21I CCTNAGG 1 cut(s) 940
Bse3DI GCAATG 3 cut(s) 500, 729, 2371
Bse8I GATNNNNATC 2 cut(s) 1152, 1201
BseBI CCWGG 5 cut(s) 468, 1481, 2020, 2772, 2828
BseDI CCNNGG 7 cut(s) 1378, 1622, 2104, 2487, 2681, 2770, 2771
BseGI GGATG 6 cut(s) 307, 415, 1501, 1780, 2157, 2400
BseJI GATNNNNATC 2 cut(s) 1152, 1201
BseLI CCNNNNNNNGG 8 cut(s) 280, 1001, 1046, 1320, 1384, 1592, 2488, 2687
BseMI GCAATG 3 cut(s) 500, 729, 2371
BseMII CTCAG 8 cut(s) 954, 1196, 1522, 1650, 1809, 2707, 2720, 2828
BseNI ACTGG 6 cut(s) 578, 684, 989, 1187, 1428, 2764
BseRI GAGGAG 7 cut(s) 31, 182, 217, 220, 311, 320, 928
BseYI CCCAGC 1 cut(s) 2482
BsgI GTGCAG 2 cut(s) 869, 2243
Bsh1236I CGCG 2 cut(s) 265, 278
Bsh1285I CGRYCG 1 cut(s) 2003
BshFI GGCC 9 cut(s) 37, 315, 454, 863, 1377, 1549, 2023, 2264, 2619
BshNI GGYRCC 2 cut(s) 342, 944
BsiEI CGRYCG 1 cut(s) 2003
BsiHKAI GWGCWC 1 cut(s) 840
BsiHKCI CYCGRG 2 cut(s) 2385, 2487
BslFI GGGAC 2 cut(s) 2504, 2752
BslI CCNNNNNNNGG 8 cut(s) 280, 1001, 1046, 1320, 1384, 1592, 2488, 2687
BsmAI GTCTC 6 cut(s) 1012, 1115, 1558, 1594, 2696, 2781
BsmFI GGGAC 2 cut(s) 2504, 2752
BsnI GGCC 9 cut(s) 37, 315, 454, 863, 1377, 1549, 2023, 2264, 2619
Bso31I GGTCTC 5 cut(s) 1012, 1115, 1594, 2696, 2781
BsoBI CYCGRG 2 cut(s) 2385, 2487
Bsp1286I GDGCHC 1 cut(s) 840
Bsp1407I TGTACA 1 cut(s) 2242
Bsp1720I GCTNAGC 2 cut(s) 1527, 2706
BspACI CCGC 4 cut(s) 112, 291, 357, 451
BspANI GGCC 9 cut(s) 37, 315, 454, 863, 1377, 1549, 2023, 2264, 2619
BspCNI CTCAG 8 cut(s) 953, 1195, 1521, 1649, 1810, 2706, 2719, 2827
BspFNI CGCG 2 cut(s) 265, 278
BspHI TCATGA 1 cut(s) 607
BspLI GGNNCC 7 cut(s) 116, 344, 918, 946, 1283, 1312, 2337
BspMAI CTGCAG 2 cut(s) 2374, 2467
BspMI ACCTGC 3 cut(s) 1716, 1803, 1890
BspPI GGATC 7 cut(s) 476, 578, 673, 1305, 1318, 1651, 2442
BspT107I GGYRCC 2 cut(s) 342, 944
BspTNI GGTCTC 5 cut(s) 1012, 1115, 1594, 2696, 2781
BsrDI GCAATG 3 cut(s) 500, 729, 2371
BsrFI RCCGGY 1 cut(s) 60
BsrGI TGTACA 1 cut(s) 2242
BsrI ACTGG 6 cut(s) 578, 684, 989, 1187, 1428, 2764
BssAI RCCGGY 1 cut(s) 60
BssECI CCNNGG 7 cut(s) 1378, 1622, 2104, 2487, 2681, 2770, 2771
BssNI GRCGYC 2 cut(s) 105, 343
BssSI CACGAG 1 cut(s) 2511
BssT1I CCWWGG 2 cut(s) 1622, 2681
Bst2BI CACGAG 1 cut(s) 2511
Bst2UI CCWGG 5 cut(s) 468, 1481, 2020, 2772, 2828
Bst6I CTCTTC 3 cut(s) 332, 1554, 2344
BstACI GRCGYC 2 cut(s) 105, 343
BstAPI GCANNNNNTGC 2 cut(s) 2378, 2381
BstAUI TGTACA 1 cut(s) 2242
BstBAI YACGTR 1 cut(s) 163
BstC8I GCNNGC 3 cut(s) 58, 783, 2262
BstDSI CCRYGG 1 cut(s) 1378
BstENI CCTNNNNNAGG 2 cut(s) 1590, 2685
BstF5I GGATG 6 cut(s) 307, 415, 1501, 1780, 2157, 2400
BstFNI CGCG 2 cut(s) 265, 278
BstH2I RGCGCY 2 cut(s) 346, 2409
BstHHI GCGC 5 cut(s) 265, 280, 345, 2408, 2674
BstMAI GTCTC 6 cut(s) 1012, 1115, 1558, 1594, 2696, 2781
BstMCI CGRYCG 1 cut(s) 2003
BstMWI GCNNNNNNNGC 8 cut(s) 53, 340, 953, 2375, 2378, 2381, 2387, 2603
BstNI CCWGG 5 cut(s) 468, 1481, 2020, 2772, 2828
BstNSI RCATGY 2 cut(s) 768, 2705
BstSCI CCNGG 9 cut(s) 466, 1479, 1715, 1802, 2018, 2486, 2487, 2770, 2826
BstSFI CTRYAG 5 cut(s) 963, 1041, 2370, 2400, 2463
BstUI CGCG 2 cut(s) 265, 278
BstV2I GAAGAC 4 cut(s) 180, 189, 201, 2792
BstX2I RGATCY 3 cut(s) 49, 1310, 2434
BstYI RGATCY 3 cut(s) 49, 1310, 2434
Bsu36I CCTNAGG 1 cut(s) 940
BsuRI GGCC 9 cut(s) 37, 315, 454, 863, 1377, 1549, 2023, 2264, 2619
BtgI CCRYGG 1 cut(s) 1378
BtgZI GCGATG 1 cut(s) 375
BtsCI GGATG 6 cut(s) 307, 415, 1501, 1780, 2157, 2400
BtsIMutI CAGTG 4 cut(s) 648, 677, 1194, 2176
BveI ACCTGC 3 cut(s) 1716, 1803, 1890
Cac8I GCNNGC 3 cut(s) 58, 783, 2262
CaiI CAGNNNCTG 4 cut(s) 1523, 2378, 2381, 2651
CciI TCATGA 1 cut(s) 607
CfoI GCGC 5 cut(s) 265, 280, 345, 2408, 2674
Cfr10I RCCGGY 1 cut(s) 60
Cfr13I GGNCC 3 cut(s) 1037, 2022, 2824
Cfr9I CCCGGG 1 cut(s) 2487
CseI GACGC 1 cut(s) 611
Csp6I GTAC 7 cut(s) 64, 139, 1437, 1769, 2066, 2073, 2243
CviAII CATG 6 cut(s) 488, 608, 765, 1259, 1476, 2702
CviQI GTAC 7 cut(s) 64, 139, 1437, 1769, 2066, 2073, 2243
DinI GGCGCC 1 cut(s) 344
DraIII CACNNNGTG 2 cut(s) 1004, 1540
EaeI YGGCCR 3 cut(s) 313, 1375, 2262
Eam1104I CTCTTC 3 cut(s) 332, 1554, 2344
EarI CTCTTC 3 cut(s) 332, 1554, 2344
EciI GGCGGA 1 cut(s) 127
Ecl136II GAGCTC 1 cut(s) 838
Eco130I CCWWGG 2 cut(s) 1622, 2681
Eco147I AGGCCT 1 cut(s) 1549
Eco24I GRGCYC 1 cut(s) 840
Eco31I GGTCTC 5 cut(s) 1012, 1115, 1594, 2696, 2781
Eco32I GATATC 1 cut(s) 2460
Eco47I GGWCC 2 cut(s) 1037, 2824
Eco53kI GAGCTC 1 cut(s) 838
Eco57I CTGAAG 5 cut(s) 356, 609, 1500, 1575, 1845
Eco81I CCTNAGG 1 cut(s) 940
Eco88I CYCGRG 2 cut(s) 2385, 2487
EcoICRI GAGCTC 1 cut(s) 838
EcoNI CCTNNNNNAGG 2 cut(s) 1590, 2685
EcoRII CCWGG 5 cut(s) 466, 1479, 2018, 2770, 2826
EcoRV GATATC 1 cut(s) 2460
EcoT14I CCWWGG 2 cut(s) 1622, 2681
EcoT38I GRGCYC 1 cut(s) 840
EgeI GGCGCC 1 cut(s) 344
EheI GGCGCC 1 cut(s) 344
ErhI CCWWGG 2 cut(s) 1622, 2681
FaeI CATG 6 cut(s) 491, 611, 768, 1262, 1479, 2705
FaqI GGGAC 2 cut(s) 2504, 2752
FatI CATG 6 cut(s) 487, 607, 764, 1258, 1475, 2701
FauNDI CATATG 1 cut(s) 1273
FbaI TGATCA 1 cut(s) 2173
FblI GTMKAC 1 cut(s) 2808
FokI GGATG 6 cut(s) 314, 422, 1508, 1767, 2164, 2407
FriOI GRGCYC 1 cut(s) 840
FspBI CTAG 6 cut(s) 1023, 1278, 1545, 1623, 2661, 2796
GlaI GCGC 5 cut(s) 264, 279, 344, 2407, 2673
GsaI CCCAGC 1 cut(s) 2486
GsuI CTGGAG 2 cut(s) 450, 2727
HaeII RGCGCY 2 cut(s) 346, 2409
HaeIII GGCC 9 cut(s) 37, 315, 454, 863, 1377, 1549, 2023, 2264, 2619
HgaI GACGC 1 cut(s) 611
HhaI GCGC 5 cut(s) 265, 280, 345, 2408, 2674
Hin1I GRCGYC 2 cut(s) 105, 343
Hin1II CATG 6 cut(s) 491, 611, 768, 1262, 1479, 2705
Hin6I GCGC 5 cut(s) 263, 278, 343, 2406, 2672
HinP1I GCGC 5 cut(s) 263, 278, 343, 2406, 2672
HincII GTYRAC 3 cut(s) 2101, 2699, 2809
HindII GTYRAC 3 cut(s) 2101, 2699, 2809
HindIII AAGCTT 2 cut(s) 539, 2013
HpaI GTTAAC 1 cut(s) 2101
HphI GGTGA 7 cut(s) 232, 241, 707, 1238, 2534, 2670, 2794
Hpy166II GTNNAC 3 cut(s) 2101, 2699, 2809
Hpy8I GTNNAC 3 cut(s) 2101, 2699, 2809
Hpy99I CGWCG 3 cut(s) 126, 158, 401
HpyCH4IV ACGT 2 cut(s) 105, 162
HpyF10VI GCNNNNNNNGC 8 cut(s) 53, 340, 953, 2375, 2378, 2381, 2387, 2603
HpySE526I ACGT 2 cut(s) 105, 162
Hsp92I GRCGYC 2 cut(s) 105, 343
Hsp92II CATG 6 cut(s) 491, 611, 768, 1262, 1479, 2705
HspAI GCGC 5 cut(s) 263, 278, 343, 2406, 2672
KasI GGCGCC 1 cut(s) 342
Ksp22I TGATCA 1 cut(s) 2173
KspAI GTTAAC 1 cut(s) 2101
LmnI GCTCC 4 cut(s) 114, 835, 1281, 1670
LweI GCATC 2 cut(s) 1340, 2067
MaeI CTAG 6 cut(s) 1023, 1278, 1545, 1623, 2661, 2796
MaeII ACGT 2 cut(s) 105, 162
MaeIII GTNAC 5 cut(s) 266, 812, 1540, 1552, 2676
MfeI CAATTG 1 cut(s) 2307
MflI RGATCY 3 cut(s) 49, 1310, 2434
MhlI GDGCHC 1 cut(s) 840
Mly113I GGCGCC 1 cut(s) 343
MlyI GAGTC 5 cut(s) 107, 263, 293, 437, 2804
MroXI GAANNNNTTC 2 cut(s) 594, 2736
MseI TTAA 5 cut(s) 351, 1866, 2100, 2249, 2418
MspA1I CMGCKG 3 cut(s) 334, 2378, 2651
MspR9I CCNGG 9 cut(s) 468, 1481, 1717, 1804, 2020, 2488, 2489, 2772, 2828
MunI CAATTG 1 cut(s) 2307
MvaI CCWGG 5 cut(s) 468, 1481, 2020, 2772, 2828
MvnI CGCG 2 cut(s) 265, 278
MwoI GCNNNNNNNGC 8 cut(s) 53, 340, 953, 2375, 2378, 2381, 2387, 2603
NarI GGCGCC 1 cut(s) 343
NciI CCSGG 4 cut(s) 1717, 1804, 2488, 2489
NdeI CATATG 1 cut(s) 1273
NlaIII CATG 6 cut(s) 491, 611, 768, 1262, 1479, 2705
NlaIV GGNNCC 7 cut(s) 116, 344, 918, 946, 1283, 1312, 2337
NmeAIII GCCGAG 1 cut(s) 239
NmuCI GTSAC 3 cut(s) 266, 1540, 2676
NspI RCATGY 2 cut(s) 768, 2705
PagI TCATGA 1 cut(s) 607
PasI CCCWGGG 1 cut(s) 2771
PceI AGGCCT 1 cut(s) 1549
PcsI WCGNNNNNNNCGW 3 cut(s) 153, 159, 183
PdmI GAANNNNTTC 2 cut(s) 594, 2736
PfoI TCCNGGA 1 cut(s) 466
Ple19I CGATCG 1 cut(s) 2003
PleI GAGTC 5 cut(s) 106, 263, 292, 437, 2804
PluTI GGCGCC 1 cut(s) 346
PpsI GAGTC 5 cut(s) 106, 263, 292, 437, 2804
Ppu21I YACGTR 1 cut(s) 163
Psp124BI GAGCTC 1 cut(s) 840
Psp6I CCWGG 5 cut(s) 466, 1479, 2018, 2770, 2826
PspFI CCCAGC 1 cut(s) 2482
PspGI CCWGG 5 cut(s) 466, 1479, 2018, 2770, 2826
PspN4I GGNNCC 7 cut(s) 116, 344, 918, 946, 1283, 1312, 2337
PspPI GGNCC 3 cut(s) 1037, 2022, 2824
PsrI GAACNNNNNNTAC 4 cut(s) 1338, 1370, 1761, 1793
PstI CTGCAG 2 cut(s) 2374, 2467
PstNI CAGNNNCTG 4 cut(s) 1523, 2378, 2381, 2651
PsuI RGATCY 3 cut(s) 49, 1310, 2434
PvuI CGATCG 1 cut(s) 2003
PvuII CAGCTG 3 cut(s) 334, 2378, 2651
RsaI GTAC 7 cut(s) 65, 140, 1438, 1770, 2067, 2074, 2244
RsaNI GTAC 7 cut(s) 64, 139, 1437, 1769, 2066, 2073, 2243
SacI GAGCTC 1 cut(s) 840
SalI GTCGAC 1 cut(s) 2807
SaqAI TTAA 5 cut(s) 351, 1866, 2100, 2249, 2418
Sau96I GGNCC 3 cut(s) 1037, 2022, 2824
SchI GAGTC 5 cut(s) 107, 263, 293, 437, 2804
ScrFI CCNGG 9 cut(s) 468, 1481, 1717, 1804, 2020, 2488, 2489, 2772, 2828
SduI GDGCHC 1 cut(s) 840
SfaNI GCATC 2 cut(s) 1340, 2067
SfcI CTRYAG 5 cut(s) 963, 1041, 2370, 2400, 2463
SfoI GGCGCC 1 cut(s) 344
SinI GGWCC 2 cut(s) 1037, 2824
SmaI CCCGGG 1 cut(s) 2489
SseBI AGGCCT 1 cut(s) 1549
SsiI CCGC 4 cut(s) 112, 291, 357, 451
SspDI GGCGCC 1 cut(s) 342
SspI AATATT 2 cut(s) 1174, 1268
SspMI CTAG 6 cut(s) 1023, 1278, 1545, 1623, 2661, 2796
SstI GAGCTC 1 cut(s) 840
StuI AGGCCT 1 cut(s) 1549
StyD4I CCNGG 9 cut(s) 466, 1479, 1715, 1802, 2018, 2486, 2487, 2770, 2826
StyI CCWWGG 2 cut(s) 1622, 2681
TaiI ACGT 2 cut(s) 108, 165
TaqI TCGA 9 cut(s) 41, 147, 240, 446, 1118, 1428, 1725, 1812, 2808
TatI WGTACW 2 cut(s) 138, 2242
TauI GCSGC 3 cut(s) 294, 360, 454
Tru1I TTAA 5 cut(s) 351, 1866, 2100, 2249, 2418
Tru9I TTAA 5 cut(s) 351, 1866, 2100, 2249, 2418
TscAI CASTG 4 cut(s) 648, 684, 1194, 2176
TseFI GTSAC 3 cut(s) 266, 1540, 2676
Tsp45I GTSAC 3 cut(s) 266, 1540, 2676
TspGWI ACGGA 7 cut(s) 139, 399, 678, 1050, 1649, 1756, 2444
TspMI CCCGGG 1 cut(s) 2487
TspRI CASTG 4 cut(s) 648, 684, 1194, 2176
VpaK11BI GGWCC 2 cut(s) 1037, 2824
XagI CCTNNNNNAGG 2 cut(s) 1590, 2685
XapI RAATTY 4 cut(s) 794, 1370, 1394, 2505
XbaI TCTAGA 1 cut(s) 2660
XceI RCATGY 2 cut(s) 768, 2705
XcmI CCANNNNNNNNNTGG 2 cut(s) 251, 1186
XmaI CCCGGG 1 cut(s) 2487
XmaJI CCTAGG 1 cut(s) 1622
XmiI GTMKAC 1 cut(s) 2808
XmnI GAANNNNTTC 2 cut(s) 594, 2736
XspI CTAG 6 cut(s) 1023, 1278, 1545, 1623, 2661, 2796
ZraI GACGTC 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.