Rw5G025400

Bromodomain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0007816
Physical Location & Seq
Reverse (-)
36134400 .. 36140592
6193 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G025400.1

Sequence Viewer

Length: 2664 bp
ATGGGTCAGATCGTGAGGAGGAAGAAGAAAGGCAGGCCATCCAAGGCAGATCTCGCTCGCCGGTCCGGCGAATCGCCGGCGGAGGAGAGGGACGTCCGGAGAAGTCTCCGGCGCCGAAATGTGAAGTACACCATAGACTACGACGACTACTTGGACGAAGACTCCGAGGACGATGAGGAAGAAGTCGAGATTAGAATACAGAAGAAGTTGAAGCTCATGGCCAAGCTGAACCCGACGGCGGCGGAGGCGGCGCGTGACTCCCACGCGCCGGAGTCGTCCGACGAGGACGAGACCGAGAGGAAGCCGCTGAAGAAGCGGCCGATCAACGGCGCGGATAAGGACGAGGATGACGAAGATTACGAGGAAAATGACGGCGGTGATGACGACGATGACTGTGAGGAACGGGGCCGGAAAGCTGACTCCAAGCAACTCAATTCTCCTCCAGGAACGCCGCCGCCGTCGGATCATCATCAGTCTGTCATTCCGTTGCCGGATAAGAAAACGTTGGAGTTGATTCTCGACAAGCTTCAAAAGAAAGATACTTATGGCGTGTATGCAGAACCAGTCGATCCCGAAGAGCTTCCTGACTATCATGATGTCATTGAGCATCCCATGGATTTTGCGACGGTGAGGAAGCAGTTGGCAAATGGAGCCTATTCTACACTGGAACAATTTGAGAGAGATGTCTTTTTAATATGTTCAAACGCAATGCAATACAATTCACCTGAGACAATATACCATAAACAGGCATCTTCTATACAAGAGCTAGGAAGGAGAAAATTTGAGAGGTTAAGAATTGACTATGAACGGTCAGAAAAGGAGGTCAAATCAGTGCAGAAAACAAAGTCAAATTCCTTGGTAAAGAAACAGATAAAGAAGCCTCTGTCCCGAACATTACAGGAACCCATTGGCTCTGATTTCTCCTCAGGTGCTACTCTTGCCACTGCTGCTGAAGTCCAGAACAGTTCCCATCCAACACAAGGAGCTGGTTGTGAGAGAGCTAGCAACATTGATGGGCCTGTAGAGGGTAATTCATCCTTGAATGAAGCTAATCTAGAGAAGGCAGAAGAAATGCTATCAGGGAAGAGTCTACCATCTAAAGTTGGGAAGAAGCCATCTGTGTTTGATGACAACCGTCGTGCAACCTATAACATATCCAATCAGCCTGTGATAACGTCAGAATCAATATTCACAACCTTCGAGGGTGAAATCAAGCAGTTTGTTGCAGTCGGGCTTCATGCAGAATATTCATATGCCAGGAGCCTGGCTCGATTCTCTGGAAGTCTTGGACCAGTTGCTTGGAAAGTTGCATCAAAGAGGATCGAACAGGCCTTACCTGATGGATGTAAATTTGGTCGTGGATGGGTCGAAGAATATGAGCCACTTCCAACCCCTGTACTGATGGTAGACAAAGGTACCCAAAATCAATCTGCTTTGGCTGCAAAATTCTTTTCACACAATGAATCAAGAAAGGATGATAGAACTTTAAGGACTTCTGTTCCTGCTAAGGATCGCCCTGTTACTAGGTCTGTTATAGAAGAGAGACAGCACTGTGTTAGTGTTCCTACTTCAGCGGGGAAACCATCATTTTTTGGTTCTTCTAGGGGACATTACTCGGAAGAGAAACCGCCTGTTATTAGTTCTGTCGGAGGAAAAGGTGGTAATGCAGTTAGTGCCATTCATAAGCAGCAAAATCCACAATCCAGGTTTATTGAGAGTGGGAAACAGGTTCCGAAGAAAGTTGAGTTGAACTCTGTACCCTCAGTTAATCAAAATAATGCCAACCTTGTTGCTGAAAAGCAATCACCAAGAAACTCAGAGCCAGCAACTTCAAGGTCCAGAGGTACATCATCGAGGAAGATGAATCTTCAGCAGCCTGTACCTTTTAAGATACCGGATTCTAATGGTGTTATTACCTCACGGTTGCCTAATGGGAAAGGTGCGAGTGCTTGTATGGAGAATCGGATGATTGGTTCTTCTGATAGGGCTCCTAGCCAAATGGAAAGAACTGAAGCTTATTTTCCTCATGCACAGGAGCAGGGTCTTAGTGACCCAGTACAGTTGATGAAAAAATTGGCGGAGAAGACTCAAAAGCAACAGCAGTCATCAATTCAATCGTCAATTGATACTAAACCTGTCGTGTCATCGGTTCCATCAACGAGAAGAGATGATCCAAGCAATGCTGCAGCAGCTGCTGCCCGTGCTTGGATGTCTATAGGGGGTGCATCCTTTAAACAGCCAACAGACAATCCGACAGTGCCCAAAAGTCAGATCTATGCAGATTCATTATATAACCCATCACGAGAGATTAATTCACAAATTTCACGAGTTCGGGGGGAGGTTCCTAATTCTGGCGCAATGCAATTTCAGACTGAGAACAATTTTTCATTTCCAACTTTTTTACCACGACCTGTTCATATGGTGAATGAACCACAGTTCCAAAATCGACCTATATTTTTCCCTCAGTTGGCAGCAGCTGATTTGTCTAGGTTTCAGGTGCCGCCCCCTTGGAGGGGTCTCAGTCCTTGTGCCCAGCCAAGACAGAAACAAGAATGTCTTCCTCCAGATTTAAATATTGGTTTCCAGTCCCCAGGGTCTCCAGTGAAACAGTCATCTGGTGTTATGGTTGACTCTCAGCAGCCAGACCTGGCTTTGCAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0042393 GO:0070577 GO:0140030 GO:0140033
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain

Protein Analysis

887

Amino Acids

98.37

Weight (kDa)

7.23

Isoelectric Point (pI)

65.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 172 - 251 1.1e-24 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 96
Acc65I GGTACC 1 cut(s) 1415
AccB1I GGYRCC 3 cut(s) 111, 1415, 2497
AccI GTMKAC 2 cut(s) 1090, 1407
AccII CGCG 3 cut(s) 253, 266, 332
AccIII TCCGGA 1 cut(s) 96
AclI AACGTT 1 cut(s) 503
AclWI GGATC 5 cut(s) 471, 563, 1328, 1518, 2165
AcoI YGGCCR 2 cut(s) 219, 317
AcsI RAATTY 5 cut(s) 779, 850, 1349, 1445, 2319
AcuI CTGAAG 5 cut(s) 329, 972, 1554, 1853, 2031
AcyI GRCGYC 2 cut(s) 93, 112
AfaI GTAC 7 cut(s) 128, 1398, 1417, 1758, 1846, 1881, 2058
AgsI TTSAA 7 cut(s) 211, 530, 702, 1042, 1750, 1833, 2114
AjnI CCWGG 6 cut(s) 442, 1256, 1263, 1703, 2590, 2646
AloI GAACNNNNNNTCC 4 cut(s) 1957, 1989, 2421, 2453
Alw26I GTCTC 6 cut(s) 110, 284, 722, 1537, 2522, 2601
AlwI GGATC 5 cut(s) 471, 563, 1328, 1518, 2165
AlwNI CAGNNNCTG 3 cut(s) 2192, 2195, 2477
Aor13HI TCCGGA 1 cut(s) 96
AoxI GGCC 6 cut(s) 35, 219, 317, 406, 1016, 1329
ApoI RAATTY 5 cut(s) 779, 850, 1349, 1445, 2319
AseI ATTAAT 1 cut(s) 2310
Asp700I GAANNNNTTC 2 cut(s) 579, 2556
Asp718I GGTACC 1 cut(s) 1415
AspLEI GCGC 5 cut(s) 114, 253, 268, 332, 2357
AspS9I GGNCC 5 cut(s) 63, 406, 1016, 1289, 1836
AsuHPI GGTGA 6 cut(s) 389, 640, 714, 1217, 1797, 2434
AsuNHI GCTAGC 1 cut(s) 1001
AvaII GGWCC 3 cut(s) 63, 1289, 1836
AxyI CCTNAGG 1 cut(s) 925
BaeGI GKGCMC 2 cut(s) 2262, 2533
BaeI ACNNNNGTAYC 2 cut(s) 1399, 1432
BalI TGGCCA 1 cut(s) 221
BanI GGYRCC 3 cut(s) 111, 1415, 2497
BanII GRGCYC 1 cut(s) 1990
BauI CACGAG 2 cut(s) 2301, 2325
BbsI GAAGAC 3 cut(s) 165, 2090, 2549
BceAI ACGGC 4 cut(s) 252, 343, 388, 442
BciT130I CCWGG 6 cut(s) 444, 1258, 1265, 1705, 2592, 2648
BcoDI GTCTC 6 cut(s) 110, 284, 722, 1537, 2522, 2601
BfaI CTAG 7 cut(s) 767, 1002, 1055, 1524, 1602, 1992, 2487
BfmI CTRYAG 3 cut(s) 1020, 2184, 2214
BfoI RGCGCY 1 cut(s) 115
BglI GCCNNNNNGGC 1 cut(s) 66
BglII AGATCT 2 cut(s) 49, 2271
Bme1390I CCNGG 6 cut(s) 444, 1258, 1265, 1705, 2592, 2648
Bme18I GGWCC 3 cut(s) 63, 1289, 1836
BmgT120I GGNCC 5 cut(s) 63, 406, 1016, 1289, 1836
BmrFI CCNGG 6 cut(s) 444, 1258, 1265, 1705, 2592, 2648
BmrI ACTGGG 1 cut(s) 2048
BmsI GCATC 4 cut(s) 616, 758, 1319, 2234
BmtI GCTAGC 1 cut(s) 1005
BmuI ACTGGG 1 cut(s) 2048
BoxI GACNNNNGTC 1 cut(s) 1134
BpiI GAAGAC 3 cut(s) 165, 2090, 2549
BplI GAGNNNNNCTC 4 cut(s) 1252, 1284, 1736, 1768
BpmI CTGGAG 3 cut(s) 426, 2547, 2583
Bpu10I CCTNAGC 1 cut(s) 1506
BsaBI GATNNNNATC 1 cut(s) 468
BsaHI GRCGYC 2 cut(s) 93, 112
BsaI GGTCTC 3 cut(s) 284, 2522, 2601
BsaJI CCNNGG 7 cut(s) 42, 165, 612, 855, 2507, 2590, 2591
BsaWI WCCGGW 2 cut(s) 96, 1894
BsaXI ACNNNNNCTCC 2 cut(s) 146, 176
Bse118I RCCGGY 2 cut(s) 60, 76
Bse1I ACTGG 6 cut(s) 563, 669, 1292, 2054, 2584, 2600
Bse21I CCTNAGG 1 cut(s) 925
Bse3DI GCAATG 3 cut(s) 714, 2185, 2364
Bse8I GATNNNNATC 1 cut(s) 468
BseAI TCCGGA 1 cut(s) 96
BseBI CCWGG 6 cut(s) 444, 1258, 1265, 1705, 2592, 2648
BseDI CCNNGG 7 cut(s) 42, 165, 612, 855, 2507, 2590, 2591
BseJI GATNNNNATC 1 cut(s) 468
BseMI GCAATG 3 cut(s) 714, 2185, 2364
BseMII CTCAG 8 cut(s) 717, 939, 1776, 1830, 2364, 2477, 2533, 2648
BseNI ACTGG 6 cut(s) 563, 669, 1292, 2054, 2584, 2600
BseRI GAGGAG 4 cut(s) 31, 98, 429, 913
BseSI GKGCMC 2 cut(s) 2262, 2533
BseX3I CGGCCG 1 cut(s) 317
BseYI CCCAGC 1 cut(s) 2532
BsgI GTGCAG 1 cut(s) 854
Bsh1236I CGCG 3 cut(s) 253, 266, 332
Bsh1285I CGRYCG 1 cut(s) 320
BshFI GGCC 6 cut(s) 37, 221, 319, 408, 1018, 1331
BshNI GGYRCC 3 cut(s) 111, 1415, 2497
BsiEI CGRYCG 1 cut(s) 320
BsiSI CCGG 9 cut(s) 61, 66, 77, 97, 109, 269, 409, 491, 1895
BslFI GGGAC 4 cut(s) 104, 871, 1620, 2572
BsmAI GTCTC 6 cut(s) 110, 284, 722, 1537, 2522, 2601
BsmFI GGGAC 4 cut(s) 104, 871, 1620, 2572
BsnI GGCC 6 cut(s) 37, 221, 319, 408, 1018, 1331
Bso31I GGTCTC 3 cut(s) 284, 2522, 2601
Bsp1286I GDGCHC 3 cut(s) 1990, 2262, 2533
Bsp13I TCCGGA 1 cut(s) 96
Bsp143I GATC 9 cut(s) 9, 49, 321, 463, 568, 1320, 1510, 2170, 2271
Bsp19I CCATGG 1 cut(s) 612
BspANI GGCC 6 cut(s) 37, 221, 319, 408, 1018, 1331
BspCNI CTCAG 8 cut(s) 718, 938, 1775, 1829, 2365, 2476, 2532, 2647
BspEI TCCGGA 1 cut(s) 96
BspFNI CGCG 3 cut(s) 253, 266, 332
BspHI TCATGA 1 cut(s) 592
BspMAI CTGCAG 1 cut(s) 2188
BspOI GCTAGC 1 cut(s) 1005
BspPI GGATC 5 cut(s) 471, 563, 1328, 1518, 2165
BspQI GCTCTTC 1 cut(s) 570
BspT107I GGYRCC 3 cut(s) 111, 1415, 2497
BspTNI GGTCTC 3 cut(s) 284, 2522, 2601
BsrDI GCAATG 3 cut(s) 714, 2185, 2364
BsrFI RCCGGY 2 cut(s) 60, 76
BsrI ACTGG 6 cut(s) 563, 669, 1292, 2054, 2584, 2600
BssAI RCCGGY 2 cut(s) 60, 76
BssECI CCNNGG 7 cut(s) 42, 165, 612, 855, 2507, 2590, 2591
BssMI GATC 9 cut(s) 9, 49, 321, 463, 568, 1320, 1510, 2170, 2271
BssNI GRCGYC 2 cut(s) 93, 112
BssSI CACGAG 2 cut(s) 2301, 2325
BssT1I CCWWGG 4 cut(s) 42, 612, 855, 2507
Bst2BI CACGAG 2 cut(s) 2301, 2325
Bst2UI CCWGG 6 cut(s) 444, 1258, 1265, 1705, 2592, 2648
Bst6I CTCTTC 5 cut(s) 570, 1079, 1533, 1614, 2158
BstACI GRCGYC 2 cut(s) 93, 112
BstAPI GCANNNNNTGC 3 cut(s) 1673, 2192, 2195
BstC8I GCNNGC 5 cut(s) 35, 58, 78, 1003, 1824
BstDSI CCRYGG 1 cut(s) 612
BstFNI CGCG 3 cut(s) 253, 266, 332
BstH2I RGCGCY 1 cut(s) 115
BstHHI GCGC 5 cut(s) 114, 253, 268, 332, 2357
BstKTI GATC 9 cut(s) 12, 52, 324, 466, 571, 1323, 1513, 2173, 2274
BstMAI GTCTC 6 cut(s) 110, 284, 722, 1537, 2522, 2601
BstMBI GATC 9 cut(s) 9, 49, 321, 463, 568, 1320, 1510, 2170, 2271
BstMCI CGRYCG 1 cut(s) 320
BstNI CCWGG 6 cut(s) 444, 1258, 1265, 1705, 2592, 2648
BstPAI GACNNNNGTC 1 cut(s) 1134
BstSCI CCNGG 6 cut(s) 442, 1256, 1263, 1703, 2590, 2646
BstSFI CTRYAG 3 cut(s) 1020, 2184, 2214
BstSLI GKGCMC 2 cut(s) 2262, 2533
BstUI CGCG 3 cut(s) 253, 266, 332
BstV2I GAAGAC 3 cut(s) 165, 2090, 2549
BstX2I RGATCY 2 cut(s) 49, 2271
BstXI CCANNNNNNTGG 2 cut(s) 1264, 1299
BstYI RGATCY 2 cut(s) 49, 2271
BstZI CGGCCG 1 cut(s) 317
Bsu36I CCTNAGG 1 cut(s) 925
BsuRI GGCC 6 cut(s) 37, 221, 319, 408, 1018, 1331
BtgI CCRYGG 1 cut(s) 612
BtsI GCAGTG 1 cut(s) 942
BtsIMutI CAGTG 6 cut(s) 662, 837, 942, 1549, 2262, 2607
Cac8I GCNNGC 5 cut(s) 35, 58, 78, 1003, 1824
CaiI CAGNNNCTG 3 cut(s) 2192, 2195, 2477
CciI TCATGA 1 cut(s) 592
CfoI GCGC 5 cut(s) 114, 253, 268, 332, 2357
Cfr10I RCCGGY 2 cut(s) 60, 76
Cfr13I GGNCC 5 cut(s) 63, 406, 1016, 1289, 1836
CpoI CGGWCCG 1 cut(s) 63
Csp6I GTAC 7 cut(s) 127, 1397, 1416, 1757, 1845, 1880, 2057
CspI CGGWCCG 1 cut(s) 63
CviAII CATG 5 cut(s) 217, 593, 613, 1238, 2027
CviQI GTAC 7 cut(s) 127, 1397, 1416, 1757, 1845, 1880, 2057
DinI GGCGCC 1 cut(s) 113
DpnI GATC 9 cut(s) 11, 51, 323, 465, 570, 1322, 1512, 2172, 2273
DpnII GATC 9 cut(s) 9, 49, 321, 463, 568, 1320, 1510, 2170, 2271
DraI TTTAAA 2 cut(s) 2233, 2571
EaeI YGGCCR 2 cut(s) 219, 317
EagI CGGCCG 1 cut(s) 317
Eam1104I CTCTTC 5 cut(s) 570, 1079, 1533, 1614, 2158
EarI CTCTTC 5 cut(s) 570, 1079, 1533, 1614, 2158
EciI GGCGGA 3 cut(s) 95, 257, 2093
EclXI CGGCCG 1 cut(s) 317
Eco130I CCWWGG 4 cut(s) 42, 612, 855, 2507
Eco147I AGGCCT 1 cut(s) 1331
Eco24I GRGCYC 1 cut(s) 1990
Eco31I GGTCTC 3 cut(s) 284, 2522, 2601
Eco47I GGWCC 3 cut(s) 63, 1289, 1836
Eco52I CGGCCG 1 cut(s) 317
Eco57I CTGAAG 5 cut(s) 329, 972, 1554, 1853, 2031
Eco81I CCTNAGG 1 cut(s) 925
EcoRII CCWGG 6 cut(s) 442, 1256, 1263, 1703, 2590, 2646
EcoT14I CCWWGG 4 cut(s) 42, 612, 855, 2507
EcoT38I GRGCYC 1 cut(s) 1990
EgeI GGCGCC 1 cut(s) 113
EheI GGCGCC 1 cut(s) 113
ErhI CCWWGG 4 cut(s) 42, 612, 855, 2507
FaeI CATG 5 cut(s) 220, 596, 616, 1241, 2030
FalI AAGNNNNNCTT 2 cut(s) 2541, 2573
FaqI GGGAC 4 cut(s) 104, 871, 1620, 2572
FatI CATG 5 cut(s) 216, 592, 612, 1237, 2026
FauI CCCGC 1 cut(s) 1567
FauNDI CATATG 2 cut(s) 1252, 2418
FblI GTMKAC 2 cut(s) 1090, 1407
FriOI GRGCYC 1 cut(s) 1990
FspBI CTAG 7 cut(s) 767, 1002, 1055, 1524, 1602, 1992, 2487
GlaI GCGC 5 cut(s) 113, 252, 267, 331, 2356
GsaI CCCAGC 1 cut(s) 2536
GsuI CTGGAG 3 cut(s) 426, 2547, 2583
HaeII RGCGCY 1 cut(s) 115
HaeIII GGCC 6 cut(s) 37, 221, 319, 408, 1018, 1331
HapII CCGG 9 cut(s) 61, 66, 77, 97, 109, 269, 409, 491, 1895
HhaI GCGC 5 cut(s) 114, 253, 268, 332, 2357
Hin1I GRCGYC 2 cut(s) 93, 112
Hin1II CATG 5 cut(s) 220, 596, 616, 1241, 2030
Hin6I GCGC 5 cut(s) 112, 251, 266, 330, 2355
HinP1I GCGC 5 cut(s) 112, 251, 266, 330, 2355
HincII GTYRAC 1 cut(s) 2629
HindII GTYRAC 1 cut(s) 2629
HindIII AAGCTT 2 cut(s) 524, 2013
HpaII CCGG 9 cut(s) 61, 66, 77, 97, 109, 269, 409, 491, 1895
HphI GGTGA 6 cut(s) 389, 640, 714, 1217, 1797, 2434
Hpy166II GTNNAC 4 cut(s) 129, 1091, 1408, 2629
Hpy8I GTNNAC 4 cut(s) 129, 1091, 1408, 2629
Hpy99I CGWCG 7 cut(s) 146, 238, 284, 389, 463, 628, 1140
HpyAV CCTTC 3 cut(s) 765, 1054, 1207
HpyCH4IV ACGT 3 cut(s) 93, 503, 1175
HpySE526I ACGT 3 cut(s) 93, 503, 1175
Hsp92I GRCGYC 2 cut(s) 93, 112
Hsp92II CATG 5 cut(s) 220, 596, 616, 1241, 2030
HspAI GCGC 5 cut(s) 112, 251, 266, 330, 2355
KasI GGCGCC 1 cut(s) 111
Kpn2I TCCGGA 1 cut(s) 96
KpnI GGTACC 1 cut(s) 1419
KroI GCCGGC 1 cut(s) 76
KroNI GCCGGC 1 cut(s) 78
Kzo9I GATC 9 cut(s) 9, 49, 321, 463, 568, 1320, 1510, 2170, 2271
LguI GCTCTTC 1 cut(s) 570
LmnI GCTCC 5 cut(s) 650, 983, 1260, 1993, 2035
LweI GCATC 4 cut(s) 616, 758, 1319, 2234
MaeI CTAG 7 cut(s) 767, 1002, 1055, 1524, 1602, 1992, 2487
MaeII ACGT 3 cut(s) 93, 503, 1175
MaeIII GTNAC 3 cut(s) 254, 1519, 2048
MalI GATC 9 cut(s) 11, 51, 323, 465, 570, 1322, 1512, 2172, 2273
MboI GATC 9 cut(s) 9, 49, 321, 463, 568, 1320, 1510, 2170, 2271
MfeI CAATTG 1 cut(s) 2121
MflI RGATCY 2 cut(s) 49, 2271
MhlI GDGCHC 3 cut(s) 1990, 2262, 2533
MlsI TGGCCA 1 cut(s) 221
MluNI TGGCCA 1 cut(s) 221
Mly113I GGCGCC 1 cut(s) 112
MlyI GAGTC 7 cut(s) 155, 251, 281, 413, 1096, 2080, 2624
MmeI TCCRAC 8 cut(s) 303, 441, 486, 998, 1412, 1627, 2276, 2417
Mox20I TGGCCA 1 cut(s) 221
MreI CGCCGGCG 1 cut(s) 76
MroI TCCGGA 1 cut(s) 96
MroNI GCCGGC 1 cut(s) 76
MroXI GAANNNNTTC 2 cut(s) 579, 2556
MscI TGGCCA 1 cut(s) 221
MseI TTAA 8 cut(s) 692, 791, 1487, 1767, 1887, 2232, 2310, 2570
Msp20I TGGCCA 1 cut(s) 221
MspA1I CMGCKG 4 cut(s) 307, 1574, 2192, 2477
MspI CCGG 9 cut(s) 61, 66, 77, 97, 109, 269, 409, 491, 1895
MspR9I CCNGG 6 cut(s) 444, 1258, 1265, 1705, 2592, 2648
MunI CAATTG 1 cut(s) 2121
MvaI CCWGG 6 cut(s) 444, 1258, 1265, 1705, 2592, 2648
MvnI CGCG 3 cut(s) 253, 266, 332
NaeI GCCGGC 1 cut(s) 78
NarI GGCGCC 1 cut(s) 112
NcoI CCATGG 1 cut(s) 612
NdeI CATATG 2 cut(s) 1252, 2418
NdeII GATC 9 cut(s) 9, 49, 321, 463, 568, 1320, 1510, 2170, 2271
NgoMIV GCCGGC 1 cut(s) 76
NheI GCTAGC 1 cut(s) 1001
NlaIII CATG 5 cut(s) 220, 596, 616, 1241, 2030
NmuCI GTSAC 2 cut(s) 254, 2048
PagI TCATGA 1 cut(s) 592
PasI CCCWGGG 1 cut(s) 2591
PceI AGGCCT 1 cut(s) 1331
PciSI GCTCTTC 1 cut(s) 570
PcsI WCGNNNNNNNCGW 4 cut(s) 162, 348, 357, 455
PdiI GCCGGC 1 cut(s) 78
PdmI GAANNNNTTC 2 cut(s) 579, 2556
PfeI GAWTC 9 cut(s) 71, 514, 1181, 1272, 1463, 1864, 1898, 1960, 2282
PfoI TCCNGGA 1 cut(s) 442
PleI GAGTC 7 cut(s) 155, 251, 280, 413, 1095, 2080, 2624
PluTI GGCGCC 1 cut(s) 115
PpsI GAGTC 7 cut(s) 155, 251, 280, 413, 1095, 2080, 2624
PshAI GACNNNNGTC 1 cut(s) 1134
PshBI ATTAAT 1 cut(s) 2310
Psp1406I AACGTT 1 cut(s) 503
Psp6I CCWGG 6 cut(s) 442, 1256, 1263, 1703, 2590, 2646
PspFI CCCAGC 1 cut(s) 2532
PspGI CCWGG 6 cut(s) 442, 1256, 1263, 1703, 2590, 2646
PspPI GGNCC 5 cut(s) 63, 406, 1016, 1289, 1836
PsrI GAACNNNNNNTAC 2 cut(s) 1317, 1349
PstI CTGCAG 1 cut(s) 2188
PstNI CAGNNNCTG 3 cut(s) 2192, 2195, 2477
PsuI RGATCY 2 cut(s) 49, 2271
PvuII CAGCTG 2 cut(s) 2192, 2477
RsaI GTAC 7 cut(s) 128, 1398, 1417, 1758, 1846, 1881, 2058
RsaNI GTAC 7 cut(s) 127, 1397, 1416, 1757, 1845, 1880, 2057
Rsr2I CGGWCCG 1 cut(s) 63
RsrII CGGWCCG 1 cut(s) 63
SapI GCTCTTC 1 cut(s) 570
SaqAI TTAA 8 cut(s) 692, 791, 1487, 1767, 1887, 2232, 2310, 2570
Sau3AI GATC 9 cut(s) 9, 49, 321, 463, 568, 1320, 1510, 2170, 2271
Sau96I GGNCC 5 cut(s) 63, 406, 1016, 1289, 1836
SchI GAGTC 7 cut(s) 155, 251, 281, 413, 1096, 2080, 2624
ScrFI CCNGG 6 cut(s) 444, 1258, 1265, 1705, 2592, 2648
SduI GDGCHC 3 cut(s) 1990, 2262, 2533
SfaNI GCATC 4 cut(s) 616, 758, 1319, 2234
SfcI CTRYAG 3 cut(s) 1020, 2184, 2214
SfoI GGCGCC 1 cut(s) 113
SgrAI CRCCGGYG 1 cut(s) 76
SinI GGWCC 3 cut(s) 63, 1289, 1836
SmiI ATTTAAAT 1 cut(s) 2571
SseBI AGGCCT 1 cut(s) 1331
SspDI GGCGCC 1 cut(s) 111
SspI AATATT 3 cut(s) 1188, 1247, 2575
SspMI CTAG 7 cut(s) 767, 1002, 1055, 1524, 1602, 1992, 2487
StuI AGGCCT 1 cut(s) 1331
StyD4I CCNGG 6 cut(s) 442, 1256, 1263, 1703, 2590, 2646
StyI CCWWGG 4 cut(s) 42, 612, 855, 2507
SwaI ATTTAAAT 1 cut(s) 2571
TaiI ACGT 3 cut(s) 96, 506, 1178
TaqI TCGA 9 cut(s) 186, 519, 567, 1200, 1270, 1323, 1368, 1853, 2446
TaqII GACCGA 1 cut(s) 308
TatI WGTACW 3 cut(s) 126, 1396, 2056
TauI GCSGC 7 cut(s) 242, 251, 307, 319, 454, 457, 2503
TfiI GAWTC 9 cut(s) 71, 514, 1181, 1272, 1463, 1864, 1898, 1960, 2282
Tru1I TTAA 8 cut(s) 692, 791, 1487, 1767, 1887, 2232, 2310, 2570
Tru9I TTAA 8 cut(s) 692, 791, 1487, 1767, 1887, 2232, 2310, 2570
TscAI CASTG 6 cut(s) 669, 837, 949, 1556, 2262, 2607
TseFI GTSAC 2 cut(s) 254, 2048
Tsp45I GTSAC 2 cut(s) 254, 2048
TspGWI ACGGA 1 cut(s) 474
TspRI CASTG 6 cut(s) 669, 837, 949, 1556, 2262, 2607
VpaK11BI GGWCC 3 cut(s) 63, 1289, 1836
VspI ATTAAT 1 cut(s) 2310
XapI RAATTY 5 cut(s) 779, 850, 1349, 1445, 2319
XbaI TCTAGA 1 cut(s) 1054
XmiI GTMKAC 2 cut(s) 1090, 1407
XmnI GAANNNNTTC 2 cut(s) 579, 2556
XspI CTAG 7 cut(s) 767, 1002, 1055, 1524, 1602, 1992, 2487
ZraI GACGTC 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.