Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G26440 AT5G56270 |
| fragaria_vesca | FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 |
| malus_domestica | MD03G1044400.v1.1 |
| prunus_persica | Prupe.6G036300_v2.0.a1 Prupe.6G036300_v2.0.a1 Prupe.6G036300_v2.0.a1 Prupe.6G036300_v2.0.a1 |
| pyrus_communis | pycom03g03430 |
| rosa_chinensis | RchiOBHm_Chr5g0074411 |
| rosa_laevigata | RLG00000036473 |
| rosa_multiflora | Rmu_sc0000573.1_g000009 |
| rosa_roxburghii | Rroxscaffold_1G00007130 |
| rosa_rugosa | Rorug05G0430900 Rorug05G0431000 Rorug05G0431100 Rorug05G0431200 Rorug05G0431300 Rorug05G0431400 |
| rosa_samantha | Rh5AG488600 Rh5BG509400 Rh5CG533200 Rh5DG522100 |
| rosa_wichuraiana | Rw5G045310 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1601 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1769 |
| AatII | GACGTC | 1 cut(s) | 1635 |
| AccB1I | GGYRCC | 1 cut(s) | 43 |
| AccBSI | CCGCTC | 1 cut(s) | 1008 |
| AccII | CGCG | 2 cut(s) | 786, 877 |
| AclWI | GGATC | 5 cut(s) | 762, 1147, 1180, 1208, 1402 |
| AcsI | RAATTY | 1 cut(s) | 431 |
| AcvI | CACGTG | 1 cut(s) | 1751 |
| AcyI | GRCGYC | 1 cut(s) | 1632 |
| AfaI | GTAC | 1 cut(s) | 1552 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 62, 425, 1751, 1826, 1838 |
| AflIII | ACRYGT | 2 cut(s) | 109, 1564 |
| AgeI | ACCGGT | 3 cut(s) | 1865, 1948, 2002 |
| AhlI | ACTAGT | 1 cut(s) | 170 |
| AjnI | CCWGG | 5 cut(s) | 349, 445, 643, 1543, 1888 |
| Alw21I | GWGCWC | 3 cut(s) | 104, 896, 976 |
| Alw26I | GTCTC | 2 cut(s) | 227, 1794 |
| Alw44I | GTGCAC | 1 cut(s) | 892 |
| AlwI | GGATC | 5 cut(s) | 762, 1147, 1180, 1208, 1402 |
| Ama87I | CYCGRG | 1 cut(s) | 62 |
| AoxI | GGCC | 1 cut(s) | 352 |
| ApaLI | GTGCAC | 1 cut(s) | 892 |
| ApeKI | GCWGC | 5 cut(s) | 239, 1070, 1379, 1640, 1653 |
| ApoI | RAATTY | 1 cut(s) | 431 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 479, 511, 1180, 1212, 1471, 1503 |
| AsiGI | ACCGGT | 3 cut(s) | 1865, 1948, 2002 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1291 |
| AspLEI | GCGC | 1 cut(s) | 811 |
| AspS9I | GGNCC | 1 cut(s) | 1829 |
| AsuC2I | CCSGG | 4 cut(s) | 63, 64, 427, 1920 |
| AsuHPI | GGTGA | 6 cut(s) | 800, 925, 1223, 1682, 1706, 1922 |
| AvaI | CYCGRG | 1 cut(s) | 62 |
| AvaII | GGWCC | 1 cut(s) | 1829 |
| BaeGI | GKGCMC | 1 cut(s) | 896 |
| BanI | GGYRCC | 1 cut(s) | 43 |
| BanII | GRGCYC | 2 cut(s) | 104, 976 |
| BbrPI | CACGTG | 1 cut(s) | 1751 |
| BbsI | GAAGAC | 2 cut(s) | 171, 462 |
| Bbv12I | GWGCWC | 3 cut(s) | 104, 896, 976 |
| BbvI | GCAGC | 5 cut(s) | 226, 1057, 1391, 1627, 1665 |
| BccI | CCATC | 9 cut(s) | 25, 347, 534, 790, 815, 1019, 1301, 1457, 1978 |
| BceAI | ACGGC | 1 cut(s) | 1785 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 312, 346 |
| BciT130I | CCWGG | 5 cut(s) | 351, 447, 645, 1545, 1890 |
| BciVI | GTATCC | 1 cut(s) | 882 |
| BcnI | CCSGG | 4 cut(s) | 63, 64, 427, 1920 |
| BcoDI | GTCTC | 2 cut(s) | 227, 1794 |
| BcuI | ACTAGT | 1 cut(s) | 170 |
| BfaI | CTAG | 3 cut(s) | 57, 171, 1367 |
| BfmI | CTRYAG | 1 cut(s) | 813 |
| BfuI | GTATCC | 1 cut(s) | 882 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1662 |
| BglII | AGATCT | 1 cut(s) | 608 |
| BisI | GCNGC | 9 cut(s) | 240, 1006, 1071, 1380, 1641, 1654, 1693, 1704, 1745 |
| BlsI | GCNGC | 9 cut(s) | 241, 1007, 1072, 1381, 1642, 1655, 1694, 1705, 1746 |
| Bme1390I | CCNGG | 9 cut(s) | 63, 64, 351, 427, 447, 645, 1545, 1890, 1920 |
| Bme18I | GGWCC | 1 cut(s) | 1829 |
| BmeT110I | CYCGRG | 1 cut(s) | 62 |
| BmgT120I | GGNCC | 1 cut(s) | 1829 |
| BmiI | GGNNCC | 3 cut(s) | 45, 1830, 1989 |
| BmrFI | CCNGG | 9 cut(s) | 63, 64, 351, 427, 447, 645, 1545, 1890, 1920 |
| BmsI | GCATC | 4 cut(s) | 521, 1005, 1222, 1962 |
| BpiI | GAAGAC | 2 cut(s) | 171, 462 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 86, 118, 207, 239 |
| BpmI | CTGGAG | 2 cut(s) | 853, 1527 |
| Bpu10I | CCTNAGC | 2 cut(s) | 356, 1009 |
| BpuMI | CCSGG | 4 cut(s) | 63, 64, 427, 1920 |
| BsaAI | YACGTR | 2 cut(s) | 1412, 1751 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1467 |
| BsaHI | GRCGYC | 1 cut(s) | 1632 |
| BsaI | GGTCTC | 1 cut(s) | 227 |
| BsaJI | CCNNGG | 6 cut(s) | 62, 263, 559, 750, 1517, 1657 |
| BsaWI | WCCGGW | 4 cut(s) | 1190, 1865, 1948, 2002 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 27, 57 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 62, 425, 1751, 1826, 1838 |
| Bse118I | RCCGGY | 3 cut(s) | 1865, 1948, 2002 |
| Bse1I | ACTGG | 2 cut(s) | 738, 836 |
| Bse3DI | GCAATG | 3 cut(s) | 211, 1123, 1974 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1467 |
| BseBI | CCWGG | 5 cut(s) | 351, 447, 645, 1545, 1890 |
| BseDI | CCNNGG | 6 cut(s) | 62, 263, 559, 750, 1517, 1657 |
| BseGI | GGATG | 6 cut(s) | 526, 826, 1020, 1553, 1962, 1989 |
| BseJI | GATNNNNATC | 1 cut(s) | 1467 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 62, 425, 1751, 1826, 1838 |
| BseMI | GCAATG | 3 cut(s) | 211, 1123, 1974 |
| BseMII | CTCAG | 5 cut(s) | 238, 267, 465, 1023, 1752 |
| BseNI | ACTGG | 2 cut(s) | 738, 836 |
| BseRI | GAGGAG | 5 cut(s) | 67, 1326, 1329, 1332, 1344 |
| BseSI | GKGCMC | 1 cut(s) | 896 |
| BseXI | GCAGC | 5 cut(s) | 226, 1057, 1391, 1627, 1665 |
| BsgI | GTGCAG | 2 cut(s) | 1451, 1626 |
| Bsh1236I | CGCG | 2 cut(s) | 786, 877 |
| BshFI | GGCC | 1 cut(s) | 354 |
| BshNI | GGYRCC | 1 cut(s) | 43 |
| BshTI | ACCGGT | 3 cut(s) | 1865, 1948, 2002 |
| BsiHKAI | GWGCWC | 3 cut(s) | 104, 896, 976 |
| BsiHKCI | CYCGRG | 1 cut(s) | 62 |
| BsiSI | CCGG | 7 cut(s) | 63, 426, 1191, 1866, 1919, 1949, 2003 |
| BslFI | GGGAC | 5 cut(s) | 45, 79, 1291, 1619, 1788 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 62, 425, 1751, 1826, 1838 |
| BsmAI | GTCTC | 2 cut(s) | 227, 1794 |
| BsmFI | GGGAC | 5 cut(s) | 45, 79, 1291, 1619, 1788 |
| BsnI | GGCC | 1 cut(s) | 354 |
| Bso31I | GGTCTC | 1 cut(s) | 227 |
| BsoBI | CYCGRG | 1 cut(s) | 62 |
| Bsp1286I | GDGCHC | 3 cut(s) | 104, 896, 976 |
| Bsp1407I | TGTACA | 1 cut(s) | 1550 |
| BspANI | GGCC | 1 cut(s) | 354 |
| BspCNI | CTCAG | 5 cut(s) | 237, 268, 466, 1022, 1751 |
| BspFNI | CGCG | 2 cut(s) | 786, 877 |
| BspHI | TCATGA | 2 cut(s) | 1582, 2040 |
| BspLI | GGNNCC | 3 cut(s) | 45, 1830, 1989 |
| BspMAI | CTGCAG | 1 cut(s) | 817 |
| BspPI | GGATC | 5 cut(s) | 762, 1147, 1180, 1208, 1402 |
| BspQI | GCTCTTC | 2 cut(s) | 92, 768 |
| BspT107I | GGYRCC | 1 cut(s) | 43 |
| BspTNI | GGTCTC | 1 cut(s) | 227 |
| BsrBI | CCGCTC | 1 cut(s) | 1008 |
| BsrDI | GCAATG | 3 cut(s) | 211, 1123, 1974 |
| BsrFI | RCCGGY | 3 cut(s) | 1865, 1948, 2002 |
| BsrGI | TGTACA | 1 cut(s) | 1550 |
| BsrI | ACTGG | 2 cut(s) | 738, 836 |
| BssAI | RCCGGY | 3 cut(s) | 1865, 1948, 2002 |
| BssECI | CCNNGG | 6 cut(s) | 62, 263, 559, 750, 1517, 1657 |
| BssNI | GRCGYC | 1 cut(s) | 1632 |
| BssT1I | CCWWGG | 3 cut(s) | 263, 559, 1517 |
| Bst2UI | CCWGG | 5 cut(s) | 351, 447, 645, 1545, 1890 |
| Bst4CI | ACNGT | 4 cut(s) | 751, 1555, 1685, 1730 |
| Bst6I | CTCTTC | 5 cut(s) | 87, 92, 349, 768, 1128 |
| BstACI | GRCGYC | 1 cut(s) | 1632 |
| BstAUI | TGTACA | 1 cut(s) | 1550 |
| BstBAI | YACGTR | 2 cut(s) | 1412, 1751 |
| BstC8I | GCNNGC | 3 cut(s) | 813, 1475, 1645 |
| BstDEI | CTNAG | 7 cut(s) | 224, 276, 356, 474, 1009, 1738, 2055 |
| BstDSI | CCRYGG | 2 cut(s) | 750, 1657 |
| BstF5I | GGATG | 6 cut(s) | 526, 826, 1020, 1553, 1962, 1989 |
| BstFNI | CGCG | 2 cut(s) | 786, 877 |
| BstHHI | GCGC | 1 cut(s) | 811 |
| BstMAI | GTCTC | 2 cut(s) | 227, 1794 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 245, 806, 1379, 1653, 1662, 1924 |
| BstNI | CCWGG | 5 cut(s) | 351, 447, 645, 1545, 1890 |
| BstNSI | RCATGY | 1 cut(s) | 1568 |
| BstSCI | CCNGG | 9 cut(s) | 61, 62, 349, 425, 445, 643, 1543, 1888, 1918 |
| BstSFI | CTRYAG | 1 cut(s) | 813 |
| BstSLI | GKGCMC | 1 cut(s) | 896 |
| BstUI | CGCG | 2 cut(s) | 786, 877 |
| BstV1I | GCAGC | 5 cut(s) | 226, 1057, 1391, 1627, 1665 |
| BstV2I | GAAGAC | 2 cut(s) | 171, 462 |
| BstX2I | RGATCY | 2 cut(s) | 608, 1139 |
| BstYI | RGATCY | 2 cut(s) | 608, 1139 |
| BsuI | GTATCC | 1 cut(s) | 882 |
| BsuRI | GGCC | 1 cut(s) | 354 |
| BtgI | CCRYGG | 2 cut(s) | 750, 1657 |
| BtsCI | GGATG | 6 cut(s) | 526, 826, 1020, 1553, 1962, 1989 |
| BtsIMutI | CAGTG | 3 cut(s) | 232, 273, 1560 |
| Cac8I | GCNNGC | 3 cut(s) | 813, 1475, 1645 |
| CciI | TCATGA | 2 cut(s) | 1582, 2040 |
| CfoI | GCGC | 1 cut(s) | 811 |
| Cfr10I | RCCGGY | 3 cut(s) | 1865, 1948, 2002 |
| Cfr13I | GGNCC | 1 cut(s) | 1829 |
| Cfr9I | CCCGGG | 1 cut(s) | 62 |
| CseI | GACGC | 1 cut(s) | 792 |
| Csp6I | GTAC | 1 cut(s) | 1551 |
| CspAI | ACCGGT | 3 cut(s) | 1865, 1948, 2002 |
| CviAII | CATG | 6 cut(s) | 140, 1283, 1565, 1583, 1628, 2041 |
| CviQI | GTAC | 1 cut(s) | 1551 |
| DdeI | CTNAG | 7 cut(s) | 224, 276, 356, 474, 1009, 1738, 2055 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1769 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1769 |
| Eam1104I | CTCTTC | 5 cut(s) | 87, 92, 349, 768, 1128 |
| EarI | CTCTTC | 5 cut(s) | 87, 92, 349, 768, 1128 |
| Ecl136II | GAGCTC | 2 cut(s) | 102, 974 |
| Eco130I | CCWWGG | 3 cut(s) | 263, 559, 1517 |
| Eco24I | GRGCYC | 2 cut(s) | 104, 976 |
| Eco31I | GGTCTC | 1 cut(s) | 227 |
| Eco47I | GGWCC | 1 cut(s) | 1829 |
| Eco53kI | GAGCTC | 2 cut(s) | 102, 974 |
| Eco72I | CACGTG | 1 cut(s) | 1751 |
| Eco88I | CYCGRG | 1 cut(s) | 62 |
| EcoICRI | GAGCTC | 2 cut(s) | 102, 974 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1829 |
| EcoRII | CCWGG | 5 cut(s) | 349, 445, 643, 1543, 1888 |
| EcoT14I | CCWWGG | 3 cut(s) | 263, 559, 1517 |
| EcoT22I | ATGCAT | 1 cut(s) | 466 |
| EcoT38I | GRGCYC | 2 cut(s) | 104, 976 |
| ErhI | CCWWGG | 3 cut(s) | 263, 559, 1517 |
| FaeI | CATG | 6 cut(s) | 143, 1286, 1568, 1586, 1631, 2044 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 529, 561, 1279, 1311 |
| FaqI | GGGAC | 5 cut(s) | 45, 79, 1291, 1619, 1788 |
| FatI | CATG | 6 cut(s) | 139, 1282, 1564, 1582, 1627, 2040 |
| FauI | CCCGC | 1 cut(s) | 1645 |
| Fnu4HI | GCNGC | 9 cut(s) | 240, 1006, 1071, 1380, 1641, 1654, 1693, 1704, 1745 |
| FokI | GGATG | 6 cut(s) | 513, 833, 1027, 1560, 1969, 1996 |
| FriOI | GRGCYC | 2 cut(s) | 104, 976 |
| Fsp4HI | GCNGC | 9 cut(s) | 240, 1006, 1071, 1380, 1641, 1654, 1693, 1704, 1745 |
| FspBI | CTAG | 3 cut(s) | 57, 171, 1367 |
| GlaI | GCGC | 1 cut(s) | 810 |
| GluI | GCNGC | 9 cut(s) | 240, 1006, 1071, 1380, 1641, 1654, 1693, 1704, 1745 |
| GsuI | CTGGAG | 2 cut(s) | 853, 1527 |
| HaeIII | GGCC | 1 cut(s) | 354 |
| HapII | CCGG | 7 cut(s) | 63, 426, 1191, 1866, 1919, 1949, 2003 |
| HgaI | GACGC | 1 cut(s) | 792 |
| HhaI | GCGC | 1 cut(s) | 811 |
| Hin1I | GRCGYC | 1 cut(s) | 1632 |
| Hin1II | CATG | 6 cut(s) | 143, 1286, 1568, 1586, 1631, 2044 |
| Hin6I | GCGC | 1 cut(s) | 809 |
| HinP1I | GCGC | 1 cut(s) | 809 |
| HincII | GTYRAC | 1 cut(s) | 1450 |
| HindII | GTYRAC | 1 cut(s) | 1450 |
| HindIII | AAGCTT | 1 cut(s) | 1371 |
| HpaII | CCGG | 7 cut(s) | 63, 426, 1191, 1866, 1919, 1949, 2003 |
| HphI | GGTGA | 6 cut(s) | 800, 925, 1223, 1682, 1706, 1922 |
| Hpy166II | GTNNAC | 2 cut(s) | 894, 1450 |
| Hpy188I | TCNGA | 8 cut(s) | 475, 652, 721, 1348, 1491, 1741, 2011, 2058 |
| Hpy188III | TCNNGA | 9 cut(s) | 116, 537, 743, 761, 1170, 1457, 1583, 2016, 2041 |
| Hpy8I | GTNNAC | 2 cut(s) | 894, 1450 |
| HpyAV | CCTTC | 8 cut(s) | 329, 423, 935, 1328, 1353, 1607, 1845, 1858 |
| HpyCH4III | ACNGT | 4 cut(s) | 751, 1555, 1685, 1730 |
| HpyCH4IV | ACGT | 5 cut(s) | 109, 1076, 1411, 1632, 1750 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 245, 806, 1379, 1653, 1662, 1924 |
| HpyF3I | CTNAG | 7 cut(s) | 224, 276, 356, 474, 1009, 1738, 2055 |
| HpySE526I | ACGT | 5 cut(s) | 109, 1076, 1411, 1632, 1750 |
| Hsp92I | GRCGYC | 1 cut(s) | 1632 |
| Hsp92II | CATG | 6 cut(s) | 143, 1286, 1568, 1586, 1631, 2044 |
| HspAI | GCGC | 1 cut(s) | 809 |
| LguI | GCTCTTC | 2 cut(s) | 92, 768 |
| LmnI | GCTCC | 5 cut(s) | 265, 509, 671, 971, 1546 |
| Lsp1109I | GCAGC | 5 cut(s) | 226, 1057, 1391, 1627, 1665 |
| LweI | GCATC | 4 cut(s) | 521, 1005, 1222, 1962 |
| MaeI | CTAG | 3 cut(s) | 57, 171, 1367 |
| MaeII | ACGT | 5 cut(s) | 109, 1076, 1411, 1632, 1750 |
| MaeIII | GTNAC | 7 cut(s) | 593, 724, 944, 1301, 1679, 1685, 1771 |
| MbiI | CCGCTC | 1 cut(s) | 1008 |
| MflI | RGATCY | 2 cut(s) | 608, 1139 |
| MhlI | GDGCHC | 3 cut(s) | 104, 896, 976 |
| MluCI | AATT | 4 cut(s) | 234, 431, 904, 1176 |
| MlyI | GAGTC | 3 cut(s) | 305, 1214, 1358 |
| MmeI | TCCRAC | 1 cut(s) | 443 |
| Mph1103I | ATGCAT | 1 cut(s) | 466 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1291 |
| MseI | TTAA | 5 cut(s) | 255, 335, 453, 987, 1875 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1287, 1626 |
| MspA1I | CMGCKG | 2 cut(s) | 1640, 1692 |
| MspI | CCGG | 7 cut(s) | 63, 426, 1191, 1866, 1919, 1949, 2003 |
| MspR9I | CCNGG | 9 cut(s) | 63, 64, 351, 427, 447, 645, 1545, 1890, 1920 |
| MvaI | CCWGG | 5 cut(s) | 351, 447, 645, 1545, 1890 |
| MvnI | CGCG | 2 cut(s) | 786, 877 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 245, 806, 1379, 1653, 1662, 1924 |
| NciI | CCSGG | 4 cut(s) | 63, 64, 427, 1920 |
| NlaIII | CATG | 6 cut(s) | 143, 1286, 1568, 1586, 1631, 2044 |
| NlaIV | GGNNCC | 3 cut(s) | 45, 1830, 1989 |
| NmuCI | GTSAC | 3 cut(s) | 724, 944, 1771 |
| NsiI | ATGCAT | 1 cut(s) | 466 |
| NspI | RCATGY | 1 cut(s) | 1568 |
| PagI | TCATGA | 2 cut(s) | 1582, 2040 |
| PciI | ACATGT | 1 cut(s) | 1564 |
| PciSI | GCTCTTC | 2 cut(s) | 92, 768 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1291 |
| PfeI | GAWTC | 9 cut(s) | 136, 191, 377, 791, 1064, 1149, 1343, 1758, 2012 |
| PfoI | TCCNGGA | 1 cut(s) | 1543 |
| PinAI | ACCGGT | 3 cut(s) | 1865, 1948, 2002 |
| PkrI | GCNGC | 9 cut(s) | 241, 1007, 1072, 1381, 1642, 1655, 1694, 1705, 1746 |
| PleI | GAGTC | 3 cut(s) | 305, 1213, 1357 |
| PmaCI | CACGTG | 1 cut(s) | 1751 |
| PmlI | CACGTG | 1 cut(s) | 1751 |
| PpsI | GAGTC | 3 cut(s) | 305, 1213, 1357 |
| Ppu21I | YACGTR | 2 cut(s) | 1412, 1751 |
| PpuMI | RGGWCCY | 1 cut(s) | 1829 |
| PscI | ACATGT | 1 cut(s) | 1564 |
| PsiI | TTATAA | 1 cut(s) | 1601 |
| Psp124BI | GAGCTC | 2 cut(s) | 104, 976 |
| Psp5II | RGGWCCY | 1 cut(s) | 1829 |
| Psp6I | CCWGG | 5 cut(s) | 349, 445, 643, 1543, 1888 |
| PspCI | CACGTG | 1 cut(s) | 1751 |
| PspGI | CCWGG | 5 cut(s) | 349, 445, 643, 1543, 1888 |
| PspN4I | GGNNCC | 3 cut(s) | 45, 1830, 1989 |
| PspPI | GGNCC | 1 cut(s) | 1829 |
| PspPPI | RGGWCCY | 1 cut(s) | 1829 |
| PstI | CTGCAG | 1 cut(s) | 817 |
| PsuI | RGATCY | 2 cut(s) | 608, 1139 |
| RsaI | GTAC | 1 cut(s) | 1552 |
| RsaNI | GTAC | 1 cut(s) | 1551 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1287, 1626 |
| SacI | GAGCTC | 2 cut(s) | 104, 976 |
| SapI | GCTCTTC | 2 cut(s) | 92, 768 |
| SaqAI | TTAA | 5 cut(s) | 255, 335, 453, 987, 1875 |
| SatI | GCNGC | 9 cut(s) | 240, 1006, 1071, 1380, 1641, 1654, 1693, 1704, 1745 |
| Sau96I | GGNCC | 1 cut(s) | 1829 |
| SchI | GAGTC | 3 cut(s) | 305, 1214, 1358 |
| ScrFI | CCNGG | 9 cut(s) | 63, 64, 351, 427, 447, 645, 1545, 1890, 1920 |
| SduI | GDGCHC | 3 cut(s) | 104, 896, 976 |
| SfaNI | GCATC | 4 cut(s) | 521, 1005, 1222, 1962 |
| SfcI | CTRYAG | 1 cut(s) | 813 |
| SinI | GGWCC | 1 cut(s) | 1829 |
| SmaI | CCCGGG | 1 cut(s) | 64 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1287, 1626 |
| SpeI | ACTAGT | 1 cut(s) | 170 |
| Sse9I | AATT | 4 cut(s) | 234, 431, 904, 1176 |
| SspMI | CTAG | 3 cut(s) | 57, 171, 1367 |
| SstI | GAGCTC | 2 cut(s) | 104, 976 |
| StyD4I | CCNGG | 9 cut(s) | 61, 62, 349, 425, 445, 643, 1543, 1888, 1918 |
| StyI | CCWWGG | 3 cut(s) | 263, 559, 1517 |
| TaaI | ACNGT | 4 cut(s) | 751, 1555, 1685, 1730 |
| TaiI | ACGT | 5 cut(s) | 112, 1079, 1414, 1635, 1753 |
| TaqI | TCGA | 9 cut(s) | 104, 214, 322, 794, 1131, 1152, 1273, 1352, 1761 |
| TasI | AATT | 4 cut(s) | 234, 431, 904, 1176 |
| TatI | WGTACW | 1 cut(s) | 1550 |
| TauI | GCSGC | 4 cut(s) | 1008, 1695, 1706, 1747 |
| TfiI | GAWTC | 9 cut(s) | 136, 191, 377, 791, 1064, 1149, 1343, 1758, 2012 |
| Tru1I | TTAA | 5 cut(s) | 255, 335, 453, 987, 1875 |
| Tru9I | TTAA | 5 cut(s) | 255, 335, 453, 987, 1875 |
| TscAI | CASTG | 3 cut(s) | 232, 280, 1560 |
| TseFI | GTSAC | 3 cut(s) | 724, 944, 1771 |
| TseI | GCWGC | 5 cut(s) | 239, 1070, 1379, 1640, 1653 |
| Tsp45I | GTSAC | 3 cut(s) | 724, 944, 1771 |
| TspDTI | ATGAA | 4 cut(s) | 30, 1272, 1278, 1356 |
| TspGWI | ACGGA | 3 cut(s) | 858, 1585, 1674 |
| TspMI | CCCGGG | 1 cut(s) | 62 |
| TspRI | CASTG | 3 cut(s) | 232, 280, 1560 |
| VneI | GTGCAC | 1 cut(s) | 892 |
| VpaK11BI | GGWCC | 1 cut(s) | 1829 |
| XapI | RAATTY | 1 cut(s) | 431 |
| XceI | RCATGY | 1 cut(s) | 1568 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1664 |
| XmaI | CCCGGG | 1 cut(s) | 62 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1291 |
| XspI | CTAG | 3 cut(s) | 57, 171, 1367 |
| ZraI | GACGTC | 1 cut(s) | 1633 |
| Zsp2I | ATGCAT | 1 cut(s) | 466 |