Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004357

Physical Location & Seq

Genomic Coordinates Reverse (-)

59901015 .. 59905570

Gene Structure 4556 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0431000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1611 bp

ATGTCGCACTCGGACTTTGAGCCGGTGTTCTCCGCGGGTCAGGCCAGGCCCTGGCGACCCGACGATCTTCTCAACGGGGACGGTGCGGCCAGAGCGGCGTCGTACGGCGGCGGCGTTCCGGTGTATTCGAGCGTCAATGCGATGAAGCCGGAGGGAGTCCGCGAGCACGTGAGGGAGTTCGCGGCGGCGGCGGCGGAGATGGCCGTGGAGTGCGGCAAGGGGTGTAGGGATATTGTGAGGCAGAGCTTGGGGAATCGGGACTCGTTCGTCTTCCAAAGCTTCGAGAAGGTGAAGAAGTCGTACTTTGGGAAGAGAGTGACGAAGCTGCGCGGGAAGCTGAGCTTTGTGAATGAGTATTTGCCGGAGGATAAGGAGCCGGTTCATGCTTGGTCTGTGATTCTGGTCGTCGCCGTTTTGGCTTTTGCAGCATTGATTCTGAATATGGAAACTACTCCTACCACTCCAGAGGTAGTGAAGAAGGTATACATACATCCTGCTAGTGCTGCCCGCGTAATGCTTCCAGATGGTAGATACATTGCATATAAGGAGCAAGGAGTTCTAGCTGACAGAGCTAGATTCTCAATTATTTCTCCACATTCTTTTCTTTCCTCCAGGCTTGCAGGAATACCGGGACTTAAGGCTTCACTGTTGGAAGAGTTTGGCGTTCACTTATTGACATATGATCTTCCTGGATTTGGAGAGAGTGATCCTCATCCCAACAGGAACCTTGAAACTTCAGCAATGGATATGTTGCTCTTAGCTGATGCTGTTGGTGTTAATGACAAGTTTTGGGTTGTTGGATACTCGAGTGGAAGCATGCATGCTTGGGCAGCACTCAGATACATTCCTGATAGACTTGCAGGTGCTGCCATGTTGGCTCCAATGGTTAATCCATACGATTCAATCATGAACAGGGAAGAGAGACGTAGAACCTGGAAAAGGTGGACAGGAAGAAGGCAACTTTTGTACTTTTTAGCTAGGAGATTTCCCAGATTTCTTTCTTTCTTCTACCAGCGGAGCTTCTTATCTGGAAAGCATGGACAAATCGACAAATGGCTGTCTTTGTCACTGGGAAAGAGGGATAAGGCTTTAATAGAGAGTCCAATCTATGAAGAATTCTGGCAAAGGGATGTTGAAGAGTCAATTAGGCAGGGAAGTGCAAAACCTTTTGTGGAGGAAGCTGTTTTGCAGGTATCAAATTGGGGTTTCAGCCTTGCAGACCTCAAATTGCAGAAGAAGCAACAAAGAAAAGGAATGATCAGTTGGCTCAAGTCTGTGCTCAGTGCAGCTCAGGAGGAATATATCGGCTTCCTTGGACCAATACACATATGGCAGGGGATGGATGATAAGGTGGCACCACCGTCAATGACTGATTTTGTGCACAGGATTTTACCAGGAGCTGCTGTACATAAGCTCCCCTATGAGGGCCATTTCACCTACATCTATTTTTGTGATGAATGCCATAGACAGATATTCACTACACTTTTTGGAACACCACAAGGGCCAATCAACATTGCCACAGAAGAGGATCAAAGTCCTCTCCAAGTTCATGCCGAAGAACAGGAGGAGATAACACTTGGTGATTCGGTTCTGGTACGAGCTGAGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007163 GO:0007275 GO:0007389 GO:0008150 GO:0009266 GO:0009409 GO:0009555 GO:0009628 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009846 GO:0009856 GO:0009880 GO:0009888 GO:0009889 GO:0009942 GO:0009960 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030010 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044706 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

536

Amino Acids

60.34

Weight (kDa)

7.27

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	212 - 481	3.9e-19	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	214 - 479	1.1e-10	Alpha/beta hydrolase family
Hydrolase_4	PF12146	216 - 309	1.3e-06	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26440 AT5G56270
fragaria_vesca	FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430
malus_domestica	MD03G1044400.v1.1
prunus_persica	Prupe.6G036300_v2.0.a1 Prupe.6G036300_v2.0.a1 Prupe.6G036300_v2.0.a1 Prupe.6G036300_v2.0.a1
pyrus_communis	pycom03g03430
rosa_chinensis	RchiOBHm_Chr5g0074411
rosa_laevigata	RLG00000036473
rosa_multiflora	Rmu_sc0000573.1_g000009
rosa_roxburghii	Rroxscaffold_1G00007130
rosa_rugosa	Rorug05G0430900 Rorug05G0431000 Rorug05G0431100 Rorug05G0431200 Rorug05G0431300 Rorug05G0431400
rosa_samantha	Rh5AG488600 Rh5BG509400 Rh5CG533200 Rh5DG522100
rosa_wichuraiana	Rw5G045310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	851
AasI	GACNNNNNNGTC	1 cut(s)	266
Acc36I	ACCTGC	2 cut(s)	851, 1180
AccB1I	GGYRCC	1 cut(s)	1354
AccB7I	CCANNNNNTGG	1 cut(s)	51
AccBSI	CCGCTC	1 cut(s)	95
AccI	GTMKAC	1 cut(s)	483
AccII	CGCG	5 cut(s)	35, 162, 182, 330, 510
AclWI	GGATC	2 cut(s)	701, 1536
AcoI	YGGCCR	2 cut(s)	87, 201
AcsI	RAATTY	1 cut(s)	1115
AcuI	CTGAAG	1 cut(s)	720
AcvI	CACGTG	1 cut(s)	169
AcyI	GRCGYC	1 cut(s)	98
AdeI	CACNNNGTG	1 cut(s)	1580
AfaI	GTAC	5 cut(s)	104, 302, 968, 1407, 1596
AfiI	CCNNNNNNNGG	5 cut(s)	51, 695, 939, 1423, 1424
AflII	CTTAAG	1 cut(s)	635
AgsI	TTSAA	3 cut(s)	731, 903, 1136
AjnI	CCWGG	6 cut(s)	44, 50, 611, 688, 932, 1393
AjuI	GAANNNNNNNTTGG	2 cut(s)	1246, 1278
Alw21I	GWGCWC	3 cut(s)	168, 1281, 1383
Alw26I	GTCTC	2 cut(s)	916, 1598
Alw44I	GTGCAC	1 cut(s)	1379
AlwI	GGATC	2 cut(s)	701, 1536
AlwNI	CAGNNNCTG	3 cut(s)	51, 866, 1400
Ama87I	CYCGRG	1 cut(s)	805
AoxI	GGCC	6 cut(s)	42, 47, 87, 201, 1426, 1502
ApaLI	GTGCAC	1 cut(s)	1379
ApeKI	GCWGC	7 cut(s)	325, 425, 503, 830, 866, 1286, 1400
ApoI	RAATTY	1 cut(s)	1115
AspLEI	GCGC	1 cut(s)	330
AspS9I	GGNCC	4 cut(s)	48, 1316, 1426, 1502
AsuC2I	CCSGG	1 cut(s)	630
AsuHPI	GGTGA	3 cut(s)	301, 1426, 1592
AvaI	CYCGRG	1 cut(s)	805
AvaII	GGWCC	1 cut(s)	1316
BaeGI	GKGCMC	1 cut(s)	1383
BaeI	ACNNNNGTAYC	2 cut(s)	793, 826
BanI	GGYRCC	1 cut(s)	1354
BarI	GAAGNNNNNNTAC	4 cut(s)	284, 316, 467, 499
BbrPI	CACGTG	1 cut(s)	169
BbsI	GAAGAC	1 cut(s)	262
Bbv12I	GWGCWC	3 cut(s)	168, 1281, 1383
BbvI	GCAGC	7 cut(s)	312, 437, 490, 842, 853, 1298, 1387
BccI	CCATC	3 cut(s)	193, 518, 1333
BceAI	ACGGC	3 cut(s)	121, 188, 395
BciT130I	CCWGG	6 cut(s)	46, 52, 613, 690, 934, 1395
BciVI	GTATCC	1 cut(s)	794
BclI	TGATCA	1 cut(s)	1257
BcnI	CCSGG	1 cut(s)	630
BcoDI	GTCTC	2 cut(s)	916, 1598
BfaI	CTAG	4 cut(s)	498, 560, 573, 978
BfrI	CTTAAG	1 cut(s)	635
BfuAI	ACCTGC	2 cut(s)	851, 1180
BfuI	GTATCC	1 cut(s)	794
BglI	GCCNNNNNGGC	3 cut(s)	95, 416, 875
BlpI	GCTNAGC	1 cut(s)	338
Bme1390I	CCNGG	7 cut(s)	46, 52, 613, 630, 690, 934, 1395
Bme18I	GGWCC	1 cut(s)	1316
BmeT110I	CYCGRG	1 cut(s)	805
BmgT120I	GGNCC	4 cut(s)	48, 1316, 1426, 1502
BmiI	GGNNCC	4 cut(s)	375, 725, 879, 1356
BmrFI	CCNGG	7 cut(s)	46, 52, 613, 630, 690, 934, 1395
BmrI	ACTGGG	1 cut(s)	1079
BmsI	GCATC	1 cut(s)	754
BmuI	ACTGGG	1 cut(s)	1079
BpiI	GAAGAC	1 cut(s)	262
BplI	GAGNNNNNCTC	2 cut(s)	694, 726
BpmI	CTGGAG	2 cut(s)	447, 595
Bpu10I	CCTNAGC	1 cut(s)	1290
Bpu1102I	GCTNAGC	1 cut(s)	338
BpuEI	CTTGAG	1 cut(s)	1253
BpuMI	CCSGG	1 cut(s)	630
BsaAI	YACGTR	1 cut(s)	169
BsaBI	GATNNNNATC	1 cut(s)	711
BsaHI	GRCGYC	1 cut(s)	98
BsaJI	CCNNGG	4 cut(s)	33, 50, 204, 1312
BsaWI	WCCGGW	1 cut(s)	118
BsaXI	ACNNNNNCTCC	4 cut(s)	1389, 1398, 1419, 1428
Bsc4I	CCNNNNNNNGG	5 cut(s)	51, 695, 939, 1423, 1424
Bse118I	RCCGGY	2 cut(s)	22, 376
Bse1I	ACTGG	1 cut(s)	1074
Bse3DI	GCAATG	3 cut(s)	534, 747, 1512
Bse8I	GATNNNNATC	1 cut(s)	711
BseBI	CCWGG	6 cut(s)	46, 52, 613, 690, 934, 1395
BseDI	CCNNGG	4 cut(s)	33, 50, 204, 1312
BseGI	GGATG	5 cut(s)	490, 712, 1135, 1344, 1348
BseJI	GATNNNNATC	1 cut(s)	711
BseLI	CCNNNNNNNGG	5 cut(s)	51, 695, 939, 1423, 1424
BseMI	GCAATG	3 cut(s)	534, 747, 1512
BseMII	CTCAG	5 cut(s)	329, 850, 1294, 1304, 1593
BseNI	ACTGG	1 cut(s)	1074
BseRI	GAGGAG	1 cut(s)	1580
BseSI	GKGCMC	1 cut(s)	1383
BseXI	GCAGC	7 cut(s)	312, 437, 490, 842, 853, 1298, 1387
BsgI	GTGCAG	1 cut(s)	1305
Bsh1236I	CGCG	5 cut(s)	35, 162, 182, 330, 510
BshFI	GGCC	6 cut(s)	44, 49, 89, 203, 1428, 1504
BshNI	GGYRCC	1 cut(s)	1354
BsiHKAI	GWGCWC	3 cut(s)	168, 1281, 1383
BsiHKCI	CYCGRG	1 cut(s)	805
BsiSI	CCGG	6 cut(s)	23, 119, 149, 362, 377, 629
BsiWI	CGTACG	1 cut(s)	102
BslFI	GGGAC	3 cut(s)	92, 272, 645
BslI	CCNNNNNNNGG	5 cut(s)	51, 695, 939, 1423, 1424
BsmAI	GTCTC	2 cut(s)	916, 1598
BsmBI	CGTCTC	1 cut(s)	916
BsmFI	GGGAC	3 cut(s)	92, 272, 645
BsmI	GAATGC	1 cut(s)	1463
BsnI	GGCC	6 cut(s)	44, 49, 89, 203, 1428, 1504
BsoBI	CYCGRG	1 cut(s)	805
Bsp1286I	GDGCHC	3 cut(s)	168, 1281, 1383
Bsp1407I	TGTACA	1 cut(s)	1405
Bsp143I	GATC	5 cut(s)	64, 682, 706, 1257, 1528
Bsp1720I	GCTNAGC	1 cut(s)	338
BspANI	GGCC	6 cut(s)	44, 49, 89, 203, 1428, 1504
BspCNI	CTCAG	5 cut(s)	330, 849, 1293, 1303, 1594
BspFNI	CGCG	5 cut(s)	35, 162, 182, 330, 510
BspHI	TCATGA	1 cut(s)	906
BspLI	GGNNCC	4 cut(s)	375, 725, 879, 1356
BspMI	ACCTGC	2 cut(s)	851, 1180
BspPI	GGATC	2 cut(s)	701, 1536
BspT107I	GGYRCC	1 cut(s)	1354
BspTI	CTTAAG	1 cut(s)	635
BsrBI	CCGCTC	1 cut(s)	95
BsrDI	GCAATG	3 cut(s)	534, 747, 1512
BsrFI	RCCGGY	2 cut(s)	22, 376
BsrGI	TGTACA	1 cut(s)	1405
BsrI	ACTGG	1 cut(s)	1074
BssAI	RCCGGY	2 cut(s)	22, 376
BssECI	CCNNGG	4 cut(s)	33, 50, 204, 1312
BssMI	GATC	5 cut(s)	64, 682, 706, 1257, 1528
BssNAI	GTATAC	1 cut(s)	484
BssNI	GRCGYC	1 cut(s)	98
BssT1I	CCWWGG	1 cut(s)	1312
Bst1107I	GTATAC	1 cut(s)	484
Bst2UI	CCWGG	6 cut(s)	46, 52, 613, 690, 934, 1395
Bst4CI	ACNGT	3 cut(s)	83, 648, 1362
Bst6I	CTCTTC	5 cut(s)	305, 648, 912, 1131, 1518
BstACI	GRCGYC	1 cut(s)	98
BstAFI	CTTAAG	1 cut(s)	635
BstAPI	GCANNNNNTGC	1 cut(s)	866
BstAUI	TGTACA	1 cut(s)	1405
BstBAI	YACGTR	1 cut(s)	169
BstC8I	GCNNGC	5 cut(s)	164, 508, 618, 818, 822
BstDEI	CTNAG	6 cut(s)	338, 757, 836, 1280, 1290, 1602
BstDSI	CCRYGG	2 cut(s)	33, 204
BstENI	CCTNNNNNAGG	1 cut(s)	937
BstF5I	GGATG	5 cut(s)	490, 712, 1135, 1344, 1348
BstFNI	CGCG	5 cut(s)	35, 162, 182, 330, 510
BstHHI	GCGC	1 cut(s)	330
BstKTI	GATC	5 cut(s)	67, 685, 709, 1260, 1531
BstMAI	GTCTC	2 cut(s)	916, 1598
BstMBI	GATC	5 cut(s)	64, 682, 706, 1257, 1528
BstNI	CCWGG	6 cut(s)	46, 52, 613, 690, 934, 1395
BstNSI	RCATGY	2 cut(s)	820, 824
BstSCI	CCNGG	7 cut(s)	44, 50, 611, 628, 688, 932, 1393
BstSLI	GKGCMC	1 cut(s)	1383
BstUI	CGCG	5 cut(s)	35, 162, 182, 330, 510
BstV1I	GCAGC	7 cut(s)	312, 437, 490, 842, 853, 1298, 1387
BstV2I	GAAGAC	1 cut(s)	262
BstZ17I	GTATAC	1 cut(s)	484
BsuI	GTATCC	1 cut(s)	794
BsuRI	GGCC	6 cut(s)	44, 49, 89, 203, 1428, 1504
BtgI	CCRYGG	2 cut(s)	33, 204
BtgZI	GCGATG	1 cut(s)	155
BtsCI	GGATG	5 cut(s)	490, 712, 1135, 1344, 1348
BtsIMutI	CAGTG	3 cut(s)	644, 1067, 1288
BveI	ACCTGC	2 cut(s)	851, 1180
Cac8I	GCNNGC	5 cut(s)	164, 508, 618, 818, 822
CaiI	CAGNNNCTG	3 cut(s)	51, 866, 1400
CciI	TCATGA	1 cut(s)	906
CfoI	GCGC	1 cut(s)	330
Cfr10I	RCCGGY	2 cut(s)	22, 376
Cfr13I	GGNCC	4 cut(s)	48, 1316, 1426, 1502
Cfr42I	CCGCGG	1 cut(s)	36
CseI	GACGC	2 cut(s)	87, 121
Csp6I	GTAC	5 cut(s)	103, 301, 967, 1406, 1595
CviAII	CATG	8 cut(s)	383, 817, 821, 871, 907, 1037, 1550, 1608
CviQI	GTAC	5 cut(s)	103, 301, 967, 1406, 1595
DdeI	CTNAG	6 cut(s)	338, 757, 836, 1280, 1290, 1602
DpnI	GATC	5 cut(s)	66, 684, 708, 1259, 1530
DpnII	GATC	5 cut(s)	64, 682, 706, 1257, 1528
DraIII	CACNNNGTG	1 cut(s)	1580
DrdI	GACNNNNNNGTC	1 cut(s)	266
DseDI	GACNNNNNNGTC	1 cut(s)	266
EaeI	YGGCCR	2 cut(s)	87, 201
Eam1104I	CTCTTC	5 cut(s)	305, 648, 912, 1131, 1518
EarI	CTCTTC	5 cut(s)	305, 648, 912, 1131, 1518
EciI	GGCGGA	1 cut(s)	209
Eco130I	CCWWGG	1 cut(s)	1312
Eco47I	GGWCC	1 cut(s)	1316
Eco57I	CTGAAG	1 cut(s)	720
Eco72I	CACGTG	1 cut(s)	169
Eco88I	CYCGRG	1 cut(s)	805
EcoNI	CCTNNNNNAGG	1 cut(s)	937
EcoO109I	RGGNCCY	1 cut(s)	48
EcoRI	GAATTC	1 cut(s)	1115
EcoRII	CCWGG	6 cut(s)	44, 50, 611, 688, 932, 1393
EcoT14I	CCWWGG	1 cut(s)	1312
EcoT22I	ATGCAT	1 cut(s)	822
ErhI	CCWWGG	1 cut(s)	1312
Esp3I	CGTCTC	1 cut(s)	916
FaeI	CATG	8 cut(s)	386, 820, 824, 874, 910, 1040, 1553, 1611
FalI	AAGNNNNNCTT	4 cut(s)	287, 319, 326, 358
FaqI	GGGAC	3 cut(s)	92, 272, 645
FatI	CATG	8 cut(s)	382, 816, 820, 870, 906, 1036, 1549, 1607
FauI	CCCGC	3 cut(s)	28, 323, 515
FauNDI	CATATG	2 cut(s)	679, 1328
FbaI	TGATCA	1 cut(s)	1257
FblI	GTMKAC	1 cut(s)	483
FokI	GGATG	5 cut(s)	477, 699, 1142, 1351, 1355
FspBI	CTAG	4 cut(s)	498, 560, 573, 978
GlaI	GCGC	1 cut(s)	329
GsuI	CTGGAG	2 cut(s)	447, 595
HaeIII	GGCC	6 cut(s)	44, 49, 89, 203, 1428, 1504
HapII	CCGG	6 cut(s)	23, 119, 149, 362, 377, 629
HgaI	GACGC	2 cut(s)	87, 121
HhaI	GCGC	1 cut(s)	330
Hin1I	GRCGYC	1 cut(s)	98
Hin1II	CATG	8 cut(s)	386, 820, 824, 874, 910, 1040, 1553, 1611
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HindIII	AAGCTT	1 cut(s)	277
HpaII	CCGG	6 cut(s)	23, 119, 149, 362, 377, 629
HphI	GGTGA	3 cut(s)	301, 1426, 1592
Hpy166II	GTNNAC	4 cut(s)	484, 667, 945, 1381
Hpy188I	TCNGA	3 cut(s)	13, 438, 839
Hpy188III	TCNNGA	8 cut(s)	257, 283, 464, 521, 848, 907, 1029, 1292
Hpy8I	GTNNAC	4 cut(s)	484, 667, 945, 1381
Hpy99I	CGWCG	3 cut(s)	65, 103, 410
HpyAV	CCTTC	3 cut(s)	280, 472, 948
HpyCH4III	ACNGT	3 cut(s)	83, 648, 1362
HpyCH4IV	ACGT	2 cut(s)	168, 925
HpyF3I	CTNAG	6 cut(s)	338, 757, 836, 1280, 1290, 1602
HpySE526I	ACGT	2 cut(s)	168, 925
Hsp92I	GRCGYC	1 cut(s)	98
Hsp92II	CATG	8 cut(s)	386, 820, 824, 874, 910, 1040, 1553, 1611
HspAI	GCGC	1 cut(s)	328
Ksp22I	TGATCA	1 cut(s)	1257
KspI	CCGCGG	1 cut(s)	36
Kzo9I	GATC	5 cut(s)	64, 682, 706, 1257, 1528
LmnI	GCTCC	6 cut(s)	373, 547, 883, 1017, 1397, 1419
Lsp1109I	GCAGC	7 cut(s)	312, 437, 490, 842, 853, 1298, 1387
LweI	GCATC	1 cut(s)	754
MaeI	CTAG	4 cut(s)	498, 560, 573, 978
MaeII	ACGT	2 cut(s)	168, 925
MaeIII	GTNAC	2 cut(s)	316, 1065
MalI	GATC	5 cut(s)	66, 684, 708, 1259, 1530
MbiI	CCGCTC	1 cut(s)	95
MboI	GATC	5 cut(s)	64, 682, 706, 1257, 1528
MhlI	GDGCHC	3 cut(s)	168, 1281, 1383
MluCI	AATT	5 cut(s)	582, 1115, 1143, 1198, 1226
MlyI	GAGTC	4 cut(s)	165, 254, 1108, 1148
MmeI	TCCRAC	2 cut(s)	630, 778
Mph1103I	ATGCAT	1 cut(s)	822
MseI	TTAA	4 cut(s)	636, 777, 888, 1091
MspA1I	CMGCKG	2 cut(s)	35, 1015
MspCI	CTTAAG	1 cut(s)	635
MspI	CCGG	6 cut(s)	23, 119, 149, 362, 377, 629
MspR9I	CCNGG	7 cut(s)	46, 52, 613, 630, 690, 934, 1395
Mva1269I	GAATGC	1 cut(s)	1463
MvaI	CCWGG	6 cut(s)	46, 52, 613, 690, 934, 1395
MvnI	CGCG	5 cut(s)	35, 162, 182, 330, 510
NciI	CCSGG	1 cut(s)	630
NdeI	CATATG	2 cut(s)	679, 1328
NdeII	GATC	5 cut(s)	64, 682, 706, 1257, 1528
NlaIII	CATG	8 cut(s)	386, 820, 824, 874, 910, 1040, 1553, 1611
NlaIV	GGNNCC	4 cut(s)	375, 725, 879, 1356
NmuCI	GTSAC	2 cut(s)	316, 1065
NsiI	ATGCAT	1 cut(s)	822
NspI	RCATGY	2 cut(s)	820, 824
PaeI	GCATGC	2 cut(s)	820, 824
PaeR7I	CTCGAG	1 cut(s)	805
PagI	TCATGA	1 cut(s)	906
PaqCI	CACCTGC	1 cut(s)	851
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PctI	GAATGC	1 cut(s)	1463
PfeI	GAWTC	6 cut(s)	253, 397, 433, 576, 899, 1583
Pfl23II	CGTACG	1 cut(s)	102
PflMI	CCANNNNNTGG	1 cut(s)	51
PfoI	TCCNGGA	1 cut(s)	688
PleI	GAGTC	4 cut(s)	164, 254, 1107, 1147
PmaCI	CACGTG	1 cut(s)	169
PmlI	CACGTG	1 cut(s)	169
PpsI	GAGTC	4 cut(s)	164, 254, 1107, 1147
Ppu21I	YACGTR	1 cut(s)	169
Psp6I	CCWGG	6 cut(s)	44, 50, 611, 688, 932, 1393
PspCI	CACGTG	1 cut(s)	169
PspGI	CCWGG	6 cut(s)	44, 50, 611, 688, 932, 1393
PspLI	CGTACG	1 cut(s)	102
PspN4I	GGNNCC	4 cut(s)	375, 725, 879, 1356
PspPI	GGNCC	4 cut(s)	48, 1316, 1426, 1502
PspXI	VCTCGAGB	1 cut(s)	805
PstNI	CAGNNNCTG	3 cut(s)	51, 866, 1400
RsaI	GTAC	5 cut(s)	104, 302, 968, 1407, 1596
RsaNI	GTAC	5 cut(s)	103, 301, 967, 1406, 1595
SacII	CCGCGG	1 cut(s)	36
SaqAI	TTAA	4 cut(s)	636, 777, 888, 1091
Sau3AI	GATC	5 cut(s)	64, 682, 706, 1257, 1528
Sau96I	GGNCC	4 cut(s)	48, 1316, 1426, 1502
SchI	GAGTC	4 cut(s)	165, 254, 1108, 1148
ScrFI	CCNGG	7 cut(s)	46, 52, 613, 630, 690, 934, 1395
SduI	GDGCHC	3 cut(s)	168, 1281, 1383
SfaNI	GCATC	1 cut(s)	754
Sfr274I	CTCGAG	1 cut(s)	805
Sfr303I	CCGCGG	1 cut(s)	36
SgrBI	CCGCGG	1 cut(s)	36
SinI	GGWCC	1 cut(s)	1316
SlaI	CTCGAG	1 cut(s)	805
SmlI	CTYRAG	3 cut(s)	635, 805, 1268
SmoI	CTYRAG	3 cut(s)	635, 805, 1268
SphI	GCATGC	2 cut(s)	820, 824
Sse9I	AATT	5 cut(s)	582, 1115, 1143, 1198, 1226
SspMI	CTAG	4 cut(s)	498, 560, 573, 978
StyD4I	CCNGG	7 cut(s)	44, 50, 611, 628, 688, 932, 1393
StyI	CCWWGG	1 cut(s)	1312
TaaI	ACNGT	3 cut(s)	83, 648, 1362
TaiI	ACGT	2 cut(s)	171, 928
TaqI	TCGA	4 cut(s)	128, 282, 806, 1047
TasI	AATT	5 cut(s)	582, 1115, 1143, 1198, 1226
TatI	WGTACW	2 cut(s)	966, 1405
TauI	GCSGC	9 cut(s)	89, 98, 111, 114, 185, 188, 191, 194, 216
TfiI	GAWTC	6 cut(s)	253, 397, 433, 576, 899, 1583
Tru1I	TTAA	4 cut(s)	636, 777, 888, 1091
Tru9I	TTAA	4 cut(s)	636, 777, 888, 1091
TscAI	CASTG	3 cut(s)	651, 1074, 1288
TseFI	GTSAC	2 cut(s)	316, 1065
TseI	GCWGC	7 cut(s)	325, 425, 503, 830, 866, 1286, 1400
Tsp45I	GTSAC	2 cut(s)	316, 1065
TspDTI	ATGAA	6 cut(s)	158, 371, 923, 1125, 1470, 1538
TspRI	CASTG	3 cut(s)	651, 1074, 1288
Van91I	CCANNNNNTGG	1 cut(s)	51
Vha464I	CTTAAG	1 cut(s)	635
VneI	GTGCAC	1 cut(s)	1379
VpaK11BI	GGWCC	1 cut(s)	1316
XagI	CCTNNNNNAGG	1 cut(s)	937
XapI	RAATTY	1 cut(s)	1115
XceI	RCATGY	2 cut(s)	820, 824
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1326
XhoI	CTCGAG	1 cut(s)	805
XmiI	GTMKAC	1 cut(s)	483
XspI	CTAG	4 cut(s)	498, 560, 573, 978
Zsp2I	ATGCAT	1 cut(s)	822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.