Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004357

Physical Location & Seq

Genomic Coordinates Forward (+)

59924870 .. 59925388

Gene Structure 519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0431200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCGCCTGGTATTGGGTTGGTTTCTACGCTATTGCCATCTACAGAAGCAACAACCTCTCATAACAAGGAAACTTACTCCTTATTTGATAAAGATGAAGAGATTGTCATTGGTAGAGAGGAGGTAGTGTTCGATATAGTAACAAACTCGATCAACTCAACCAGTAGTCAAGCAAATCACCTTTCCGTTTTGGCTATTGTGGGTATGGGAGGCCTCGGTAAGACAACCATGGCGAAACTAGCATGCCATGATCCTAAGATAGAAGGGCACTTCGATGAGAAAATATGGATATGTGTATCTACTGATTTCCATGTCGTGATGATATTAAGGAGGATCTTTCAATCATTTCGACCCGGAGCTGCAGTAGAGGGCAAGGATGAACTTTGTAAAACCCTCAAACAAGAGCTGAAAGGGAAAAAATATCTTCTCATACTGGATGATGTTTGGTGCCATGAATCTGAAAAATGGGAAGAGTTGATAAATTGCTTGTCAAAAGATATCTTCTCATACTATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007163 GO:0007275 GO:0007389 GO:0008150 GO:0009266 GO:0009409 GO:0009555 GO:0009628 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009846 GO:0009856 GO:0009880 GO:0009888 GO:0009889 GO:0009942 GO:0009960 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030010 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044706 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

172

Amino Acids

19.27

Weight (kDa)

5.35

Isoelectric Point (pI)

46.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	56 - 164	2.8e-24	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26440 AT5G56270
fragaria_vesca	FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430
malus_domestica	MD03G1044400.v1.1
prunus_persica	Prupe.6G036300_v2.0.a1 Prupe.6G036300_v2.0.a1 Prupe.6G036300_v2.0.a1 Prupe.6G036300_v2.0.a1
pyrus_communis	pycom03g03430
rosa_chinensis	RchiOBHm_Chr5g0074411
rosa_laevigata	RLG00000036473
rosa_multiflora	Rmu_sc0000573.1_g000009
rosa_roxburghii	Rroxscaffold_1G00007130
rosa_rugosa	Rorug05G0430900 Rorug05G0431000 Rorug05G0431100 Rorug05G0431200 Rorug05G0431300 Rorug05G0431400
rosa_samantha	Rh5AG488600 Rh5BG509400 Rh5CG533200 Rh5DG522100
rosa_wichuraiana	Rw5G045310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	4, 447
AclWI	GGATC	2 cut(s)	245, 341
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	14
AgsI	TTSAA	1 cut(s)	341
AjnI	CCWGG	1 cut(s)	7
AloI	GAACNNNNNNTCC	2 cut(s)	113, 145
AluBI	AGCT	2 cut(s)	359, 406
AluI	AGCT	2 cut(s)	359, 406
AlwI	GGATC	2 cut(s)	245, 341
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	1 cut(s)	359
AspLEI	GCGC	1 cut(s)	7
AsuC2I	CCSGG	1 cut(s)	354
AsuHPI	GGTGA	1 cut(s)	170
BaeGI	GKGCMC	1 cut(s)	270
BanI	GGYRCC	2 cut(s)	4, 447
BbvI	GCAGC	1 cut(s)	346
BccI	CCATC	1 cut(s)	46
BciT130I	CCWGG	1 cut(s)	9
BcnI	CCSGG	1 cut(s)	354
BfaI	CTAG	1 cut(s)	239
BfmI	CTRYAG	2 cut(s)	42, 360
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	1 cut(s)	360
BlsI	GCNGC	1 cut(s)	361
Bme1390I	CCNGG	2 cut(s)	9, 354
BmiI	GGNNCC	2 cut(s)	6, 449
BmrFI	CCNGG	2 cut(s)	9, 354
BpuMI	CCSGG	1 cut(s)	354
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	214, 228
BsaXI	ACNNNNNCTCC	4 cut(s)	113, 143, 348, 378
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse1I	ACTGG	2 cut(s)	162, 438
BseBI	CCWGG	1 cut(s)	9
BseDI	CCNNGG	2 cut(s)	214, 228
BseGI	GGATG	2 cut(s)	382, 442
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseNI	ACTGG	2 cut(s)	162, 438
BseRI	GAGGAG	1 cut(s)	134
BseSI	GKGCMC	1 cut(s)	270
BseXI	GCAGC	1 cut(s)	346
BshFI	GGCC	1 cut(s)	213
BshNI	GGYRCC	2 cut(s)	4, 447
BsiSI	CCGG	1 cut(s)	354
BslI	CCNNNNNNNGG	1 cut(s)	14
BsnI	GGCC	1 cut(s)	213
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	3 cut(s)	150, 250, 333
Bsp19I	CCATGG	1 cut(s)	228
BspANI	GGCC	1 cut(s)	213
BspLI	GGNNCC	2 cut(s)	6, 449
BspMAI	CTGCAG	1 cut(s)	364
BspPI	GGATC	2 cut(s)	245, 341
BspT107I	GGYRCC	2 cut(s)	4, 447
BsrI	ACTGG	2 cut(s)	162, 438
BssECI	CCNNGG	2 cut(s)	214, 228
BssMI	GATC	3 cut(s)	150, 250, 333
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	228
Bst2UI	CCWGG	1 cut(s)	9
Bst6I	CTCTTC	2 cut(s)	93, 465
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	1 cut(s)	255
BstDSI	CCRYGG	1 cut(s)	228
BstF5I	GGATG	2 cut(s)	382, 442
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	3 cut(s)	153, 253, 336
BstMBI	GATC	3 cut(s)	150, 250, 333
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNI	CCWGG	1 cut(s)	9
BstNSI	RCATGY	1 cut(s)	246
BstSCI	CCNGG	2 cut(s)	7, 352
BstSFI	CTRYAG	2 cut(s)	42, 360
BstSLI	GKGCMC	1 cut(s)	270
BstV1I	GCAGC	1 cut(s)	346
BstX2I	RGATCY	1 cut(s)	333
BstYI	RGATCY	1 cut(s)	333
BsuRI	GGCC	1 cut(s)	213
BtgI	CCRYGG	1 cut(s)	228
BtsCI	GGATG	2 cut(s)	382, 442
Cac8I	GCNNGC	1 cut(s)	244
CfoI	GCGC	1 cut(s)	7
CviAII	CATG	5 cut(s)	229, 243, 248, 311, 452
CviJI	RGCY	4 cut(s)	194, 213, 359, 406
CviKI_1	RGCY	4 cut(s)	194, 213, 359, 406
DdeI	CTNAG	1 cut(s)	255
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	3 cut(s)	152, 252, 335
DpnII	GATC	3 cut(s)	150, 250, 333
Eam1104I	CTCTTC	2 cut(s)	93, 465
EarI	CTCTTC	2 cut(s)	93, 465
Eco130I	CCWWGG	1 cut(s)	228
Eco147I	AGGCCT	1 cut(s)	213
Eco32I	GATATC	1 cut(s)	499
EcoRII	CCWGG	1 cut(s)	7
EcoRV	GATATC	1 cut(s)	499
EcoT14I	CCWWGG	1 cut(s)	228
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	5 cut(s)	232, 246, 251, 314, 455
FatI	CATG	5 cut(s)	228, 242, 247, 310, 451
Fnu4HI	GCNGC	1 cut(s)	360
FokI	GGATG	2 cut(s)	389, 449
Fsp4HI	GCNGC	1 cut(s)	360
FspBI	CTAG	1 cut(s)	239
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	360
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	213
HapII	CCGG	1 cut(s)	354
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	5 cut(s)	232, 246, 251, 314, 455
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	1 cut(s)	455
HpaII	CCGG	1 cut(s)	354
HphI	GGTGA	1 cut(s)	170
Hpy188I	TCNGA	1 cut(s)	460
Hpy188III	TCNNGA	1 cut(s)	316
HpyAV	CCTTC	1 cut(s)	257
HpyCH4V	TGCA	1 cut(s)	362
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpyF3I	CTNAG	1 cut(s)	255
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	5 cut(s)	232, 246, 251, 314, 455
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	3 cut(s)	150, 250, 333
LmnI	GCTCC	1 cut(s)	356
LpnPI	CCDG	4 cut(s)	21, 175, 367, 419
Lsp1109I	GCAGC	1 cut(s)	346
MaeI	CTAG	1 cut(s)	239
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	3 cut(s)	152, 252, 335
MboI	GATC	3 cut(s)	150, 250, 333
MboII	GAAGA	4 cut(s)	110, 416, 482, 493
MflI	RGATCY	1 cut(s)	333
MhlI	GDGCHC	1 cut(s)	270
MluCI	AATT	1 cut(s)	481
Mly113I	GGCGCC	1 cut(s)	5
MnlI	CCTC	8 cut(s)	67, 112, 115, 203, 224, 324, 361, 404
MseI	TTAA	1 cut(s)	326
MslI	CAYNNNNRTG	1 cut(s)	273
MspI	CCGG	1 cut(s)	354
MspR9I	CCNGG	2 cut(s)	9, 354
MvaI	CCWGG	1 cut(s)	9
MwoI	GCNNNNNNNGC	1 cut(s)	239
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	1 cut(s)	354
NcoI	CCATGG	1 cut(s)	228
NdeII	GATC	3 cut(s)	150, 250, 333
NlaIII	CATG	5 cut(s)	232, 246, 251, 314, 455
NlaIV	GGNNCC	2 cut(s)	6, 449
NspI	RCATGY	1 cut(s)	246
PaeI	GCATGC	1 cut(s)	246
PceI	AGGCCT	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	455
PkrI	GCNGC	1 cut(s)	361
PluTI	GGCGCC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	7
PspN4I	GGNNCC	2 cut(s)	6, 449
PstI	CTGCAG	1 cut(s)	364
PsuI	RGATCY	1 cut(s)	333
RseI	CAYNNNNRTG	1 cut(s)	273
SaqAI	TTAA	1 cut(s)	326
SatI	GCNGC	1 cut(s)	360
Sau3AI	GATC	3 cut(s)	150, 250, 333
ScrFI	CCNGG	2 cut(s)	9, 354
SduI	GDGCHC	1 cut(s)	270
SetI	ASST	5 cut(s)	59, 126, 183, 361, 408
SfcI	CTRYAG	2 cut(s)	42, 360
SfoI	GGCGCC	1 cut(s)	6
SmiMI	CAYNNNNRTG	1 cut(s)	273
SphI	GCATGC	1 cut(s)	246
Sse9I	AATT	1 cut(s)	481
SseBI	AGGCCT	1 cut(s)	213
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	239
StuI	AGGCCT	1 cut(s)	213
StyD4I	CCNGG	2 cut(s)	7, 352
StyI	CCWWGG	1 cut(s)	228
TaqI	TCGA	4 cut(s)	132, 149, 273, 349
TasI	AATT	1 cut(s)	481
TfiI	GAWTC	1 cut(s)	455
Tru1I	TTAA	1 cut(s)	326
Tru9I	TTAA	1 cut(s)	326
TseI	GCWGC	1 cut(s)	359
TspDTI	ATGAA	3 cut(s)	111, 393, 468
TspGWI	ACGGA	1 cut(s)	175
XceI	RCATGY	1 cut(s)	246
XspI	CTAG	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.