Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004357

Physical Location & Seq

Genomic Coordinates Forward (+)

59965899 .. 59967391

Gene Structure 1493 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0431400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGTTTCCAATATCTTCCCATATAATTGCTGTAATGTCGGGGACAGCTATTGATTGCACGACGATGTGCCGGAGTGTGAAATCCAAATGTATAACTGAGTTCAAGAAGAATGGTGGATCAGTTCCATATGCATTACAACTGATGTGTGAGCATTTACGTGGTCTACCTGAAAACATTAAGAATGACAAAGCATTTGGGGTACTCATGGCTGGATGGGATGCAGACAATGGTCTTCAACTTTATCGTATTTTTATAAAAAAGGGACGCGTTACAAATGAACAAGTCTACTCCGGGTGTACTGCACTGGGATCTGGTTCTGAATATGCTATAAGTATTATGAGACATTTTTATGAGTTTGGCATGTCCAATGAAAACGATGTTGCTGATGTAGCCCTAAAAGCATTATTTAATGCAACATTCTTTGATAAGTTCACCGGTGGAACTCTAAGACTGTATAAGATAGTTGAGAAAATTCCATATATAACGATGCGCGGCGTCGATTCTTTGGAGGTCCAAAACCCTGTTGTTTGCTCACGCTTTGACTCTCAGTACTACTCGCTTGGTGAATATAAATCGAGGACACTTTTCTTGGTTTATTCTACGAGGCAATATGGTGGAAAAGAGGCAATAGAGGCAATAGCAGCTCATCTGGTAGTAAAGAAGCAAGAATTCTACTTTCACCGGGTGGTGTTTAAGTCGGAAAGGGACGCTTCAATCGTATGGAATAATGTGATGACGAATTCTCAGGCCTCCCGTCATCCTTGTGATACTTTCAAGCATCTGGAAAGTTATTTCCCATACCAACTTGTTTTGGAGAAAGATGTGCCGGTTTATGAGGAAGATGTGCCGGTTTATGTGGATGAGAGTTCAGAGCCTTTGTTGCAGCTCATCATACGCGCATCATATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007163 GO:0007275 GO:0007389 GO:0008150 GO:0009266 GO:0009409 GO:0009555 GO:0009628 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009846 GO:0009856 GO:0009880 GO:0009888 GO:0009889 GO:0009942 GO:0009960 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030010 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044706 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

303

Amino Acids

34.43

Weight (kDa)

6.66

Isoelectric Point (pI)

40.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	2 - 154	8.8e-15	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26440 AT5G56270
fragaria_vesca	FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430
malus_domestica	MD03G1044400.v1.1
prunus_persica	Prupe.6G036300_v2.0.a1 Prupe.6G036300_v2.0.a1 Prupe.6G036300_v2.0.a1 Prupe.6G036300_v2.0.a1
pyrus_communis	pycom03g03430
rosa_chinensis	RchiOBHm_Chr5g0074411
rosa_laevigata	RLG00000036473
rosa_multiflora	Rmu_sc0000573.1_g000009
rosa_roxburghii	Rroxscaffold_1G00007130
rosa_rugosa	Rorug05G0430900 Rorug05G0431000 Rorug05G0431100 Rorug05G0431200 Rorug05G0431300 Rorug05G0431400
rosa_samantha	Rh5AG488600 Rh5BG509400 Rh5CG533200 Rh5DG522100
rosa_wichuraiana	Rw5G045310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	254
AccI	GTMKAC	2 cut(s)	163, 285
AccII	CGCG	3 cut(s)	267, 492, 897
AciI	CCGC	1 cut(s)	492
AclWI	GGATC	2 cut(s)	124, 316
AcsI	RAATTY	3 cut(s)	471, 668, 739
AcyI	GRCGYC	1 cut(s)	495
AdeI	CACNNNGTG	1 cut(s)	685
AfaI	GTAC	3 cut(s)	201, 298, 551
AflIII	ACRYGT	1 cut(s)	265
AgeI	ACCGGT	1 cut(s)	434
AgsI	TTSAA	4 cut(s)	103, 236, 714, 775
AluBI	AGCT	3 cut(s)	47, 644, 886
AluI	AGCT	3 cut(s)	47, 644, 886
Alw26I	GTCTC	1 cut(s)	334
AlwI	GGATC	2 cut(s)	124, 316
AoxI	GGCC	1 cut(s)	747
ApeKI	GCWGC	2 cut(s)	641, 883
ApoI	RAATTY	3 cut(s)	471, 668, 739
ArsI	GACNNNNNNTTYG	2 cut(s)	176, 208
AsiGI	ACCGGT	1 cut(s)	434
AspLEI	GCGC	2 cut(s)	492, 899
AspS9I	GGNCC	1 cut(s)	511
AsuC2I	CCSGG	2 cut(s)	292, 683
AsuHPI	GGTGA	3 cut(s)	424, 575, 671
AvaII	GGWCC	1 cut(s)	511
BbsI	GAAGAC	1 cut(s)	224
BbvI	GCAGC	2 cut(s)	653, 895
BccI	CCATC	1 cut(s)	207
BcnI	CCSGG	2 cut(s)	292, 683
BcoDI	GTCTC	1 cut(s)	334
BisI	GCNGC	3 cut(s)	493, 642, 884
BlsI	GCNGC	3 cut(s)	494, 643, 885
BmcAI	AGTACT	1 cut(s)	551
Bme1390I	CCNGG	2 cut(s)	292, 683
Bme18I	GGWCC	1 cut(s)	511
BmgT120I	GGNCC	1 cut(s)	511
BmrFI	CCNGG	2 cut(s)	292, 683
BmrI	ACTGGG	1 cut(s)	314
BmsI	GCATC	4 cut(s)	208, 477, 787, 908
BmuI	ACTGGG	1 cut(s)	314
BoxI	GACNNNNGTC	1 cut(s)	228
BpiI	GAAGAC	1 cut(s)	224
BpuMI	CCSGG	2 cut(s)	292, 683
BsaAI	YACGTR	1 cut(s)	158
BsaHI	GRCGYC	1 cut(s)	495
BsaWI	WCCGGW	1 cut(s)	434
Bse118I	RCCGGY	3 cut(s)	434, 826, 847
Bse1I	ACTGG	1 cut(s)	309
BseGI	GGATG	4 cut(s)	218, 223, 757, 865
BseMII	CTCAG	3 cut(s)	87, 560, 758
BseNI	ACTGG	1 cut(s)	309
BseXI	GCAGC	2 cut(s)	653, 895
BsgI	GTGCAG	1 cut(s)	285
Bsh1236I	CGCG	3 cut(s)	267, 492, 897
BshFI	GGCC	1 cut(s)	749
BshTI	ACCGGT	1 cut(s)	434
BsiSI	CCGG	6 cut(s)	70, 291, 435, 682, 827, 848
BslFI	GGGAC	3 cut(s)	55, 276, 719
BsmAI	GTCTC	1 cut(s)	334
BsmFI	GGGAC	3 cut(s)	55, 276, 719
BsnI	GGCC	1 cut(s)	749
Bsp143I	GATC	2 cut(s)	116, 308
BspACI	CCGC	1 cut(s)	492
BspANI	GGCC	1 cut(s)	749
BspCNI	CTCAG	3 cut(s)	88, 559, 757
BspFNI	CGCG	3 cut(s)	267, 492, 897
BspPI	GGATC	2 cut(s)	124, 316
BsrFI	RCCGGY	3 cut(s)	434, 826, 847
BsrI	ACTGG	1 cut(s)	309
BssAI	RCCGGY	3 cut(s)	434, 826, 847
BssMI	GATC	2 cut(s)	116, 308
BssNI	GRCGYC	1 cut(s)	495
Bst4CI	ACNGT	1 cut(s)	453
BstACI	GRCGYC	1 cut(s)	495
BstBAI	YACGTR	1 cut(s)	158
BstDEI	CTNAG	4 cut(s)	96, 446, 546, 744
BstF5I	GGATG	4 cut(s)	218, 223, 757, 865
BstFNI	CGCG	3 cut(s)	267, 492, 897
BstHHI	GCGC	2 cut(s)	492, 899
BstKTI	GATC	2 cut(s)	119, 311
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	2 cut(s)	116, 308
BstMWI	GCNNNNNNNGC	5 cut(s)	389, 398, 632, 641, 880
BstNSI	RCATGY	1 cut(s)	364
BstPAI	GACNNNNGTC	1 cut(s)	228
BstSCI	CCNGG	2 cut(s)	290, 681
BstUI	CGCG	3 cut(s)	267, 492, 897
BstV1I	GCAGC	2 cut(s)	653, 895
BstV2I	GAAGAC	1 cut(s)	224
BstX2I	RGATCY	1 cut(s)	308
BstYI	RGATCY	1 cut(s)	308
BsuRI	GGCC	1 cut(s)	749
BtsCI	GGATG	4 cut(s)	218, 223, 757, 865
BtsIMutI	CAGTG	1 cut(s)	302
CfoI	GCGC	2 cut(s)	492, 899
Cfr10I	RCCGGY	3 cut(s)	434, 826, 847
Cfr13I	GGNCC	1 cut(s)	511
CseI	GACGC	3 cut(s)	273, 484, 716
Csp6I	GTAC	3 cut(s)	200, 297, 550
CspAI	ACCGGT	1 cut(s)	434
CviAII	CATG	2 cut(s)	205, 361
CviJI	RGCY	7 cut(s)	47, 209, 392, 644, 749, 874, 886
CviKI_1	RGCY	7 cut(s)	47, 209, 392, 644, 749, 874, 886
CviQI	GTAC	3 cut(s)	200, 297, 550
DdeI	CTNAG	4 cut(s)	96, 446, 546, 744
DpnI	GATC	2 cut(s)	118, 310
DpnII	GATC	2 cut(s)	116, 308
DraIII	CACNNNGTG	1 cut(s)	685
Eco147I	AGGCCT	1 cut(s)	749
Eco47I	GGWCC	1 cut(s)	511
EcoRI	GAATTC	2 cut(s)	668, 739
EcoT22I	ATGCAT	1 cut(s)	133
FaeI	CATG	2 cut(s)	208, 364
FalI	AAGNNNNNCTT	2 cut(s)	694, 726
FaqI	GGGAC	3 cut(s)	55, 276, 719
FatI	CATG	2 cut(s)	204, 360
FauNDI	CATATG	1 cut(s)	127
FblI	GTMKAC	2 cut(s)	163, 285
Fnu4HI	GCNGC	3 cut(s)	493, 642, 884
FokI	GGATG	4 cut(s)	225, 230, 744, 872
Fsp4HI	GCNGC	3 cut(s)	493, 642, 884
GlaI	GCGC	2 cut(s)	491, 898
GluI	GCNGC	3 cut(s)	493, 642, 884
HaeIII	GGCC	1 cut(s)	749
HapII	CCGG	6 cut(s)	70, 291, 435, 682, 827, 848
HgaI	GACGC	3 cut(s)	273, 484, 716
HhaI	GCGC	2 cut(s)	492, 899
Hin1I	GRCGYC	1 cut(s)	495
Hin1II	CATG	2 cut(s)	208, 364
Hin6I	GCGC	2 cut(s)	490, 897
HinP1I	GCGC	2 cut(s)	490, 897
HinfI	GANTC	2 cut(s)	500, 542
HpaII	CCGG	6 cut(s)	70, 291, 435, 682, 827, 848
HphI	GGTGA	3 cut(s)	424, 575, 671
Hpy166II	GTNNAC	4 cut(s)	164, 286, 297, 432
Hpy188I	TCNGA	3 cut(s)	319, 700, 871
Hpy188III	TCNNGA	2 cut(s)	103, 782
Hpy8I	GTNNAC	4 cut(s)	164, 286, 297, 432
Hpy99I	CGWCG	2 cut(s)	64, 500
HpyCH4III	ACNGT	1 cut(s)	453
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	6 cut(s)	57, 131, 221, 302, 413, 883
HpyF10VI	GCNNNNNNNGC	5 cut(s)	389, 398, 632, 641, 880
HpyF3I	CTNAG	4 cut(s)	96, 446, 546, 744
HpySE526I	ACGT	1 cut(s)	157
Hsp92I	GRCGYC	1 cut(s)	495
Hsp92II	CATG	2 cut(s)	208, 364
HspAI	GCGC	2 cut(s)	490, 897
Kzo9I	GATC	2 cut(s)	116, 308
Lsp1109I	GCAGC	2 cut(s)	653, 895
LweI	GCATC	4 cut(s)	208, 477, 787, 908
MaeII	ACGT	1 cut(s)	157
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	2 cut(s)	118, 310
MboI	GATC	2 cut(s)	116, 308
MboII	GAAGA	4 cut(s)	6, 118, 224, 851
MflI	RGATCY	1 cut(s)	308
MluCI	AATT	4 cut(s)	24, 471, 668, 739
MluI	ACGCGT	1 cut(s)	265
MlyI	GAGTC	1 cut(s)	536
MmeI	TCCRAC	1 cut(s)	678
MnlI	CCTC	7 cut(s)	502, 570, 597, 616, 625, 760, 829
Mph1103I	ATGCAT	1 cut(s)	133
MseI	TTAA	3 cut(s)	177, 408, 693
MslI	CAYNNNNRTG	5 cut(s)	62, 156, 348, 762, 907
MspI	CCGG	6 cut(s)	70, 291, 435, 682, 827, 848
MspR9I	CCNGG	2 cut(s)	292, 683
MvnI	CGCG	3 cut(s)	267, 492, 897
MwoI	GCNNNNNNNGC	5 cut(s)	389, 398, 632, 641, 880
NciI	CCSGG	2 cut(s)	292, 683
NdeI	CATATG	1 cut(s)	127
NdeII	GATC	2 cut(s)	116, 308
NlaIII	CATG	2 cut(s)	208, 364
NsiI	ATGCAT	1 cut(s)	133
NspI	RCATGY	1 cut(s)	364
PceI	AGGCCT	1 cut(s)	749
PcsI	WCGNNNNNNNCGW	1 cut(s)	714
PfeI	GAWTC	1 cut(s)	500
PinAI	ACCGGT	1 cut(s)	434
PkrI	GCNGC	3 cut(s)	494, 643, 885
PleI	GAGTC	1 cut(s)	536
PpsI	GAGTC	1 cut(s)	536
Ppu21I	YACGTR	1 cut(s)	158
PshAI	GACNNNNGTC	1 cut(s)	228
PsiI	TTATAA	1 cut(s)	254
PspPI	GGNCC	1 cut(s)	511
PsuI	RGATCY	1 cut(s)	308
RsaI	GTAC	3 cut(s)	201, 298, 551
RsaNI	GTAC	3 cut(s)	200, 297, 550
RseI	CAYNNNNRTG	5 cut(s)	62, 156, 348, 762, 907
SaqAI	TTAA	3 cut(s)	177, 408, 693
SatI	GCNGC	3 cut(s)	493, 642, 884
Sau3AI	GATC	2 cut(s)	116, 308
Sau96I	GGNCC	1 cut(s)	511
ScaI	AGTACT	1 cut(s)	551
SchI	GAGTC	1 cut(s)	536
ScrFI	CCNGG	2 cut(s)	292, 683
SetI	ASST	6 cut(s)	49, 160, 169, 513, 646, 888
SfaNI	GCATC	4 cut(s)	208, 477, 787, 908
SgrAI	CRCCGGYG	1 cut(s)	434
SinI	GGWCC	1 cut(s)	511
SmiMI	CAYNNNNRTG	5 cut(s)	62, 156, 348, 762, 907
Sse9I	AATT	4 cut(s)	24, 471, 668, 739
SseBI	AGGCCT	1 cut(s)	749
SsiI	CCGC	1 cut(s)	492
StuI	AGGCCT	1 cut(s)	749
StyD4I	CCNGG	2 cut(s)	290, 681
TaaI	ACNGT	1 cut(s)	453
TaiI	ACGT	1 cut(s)	160
TaqI	TCGA	2 cut(s)	498, 575
TasI	AATT	4 cut(s)	24, 471, 668, 739
TatI	WGTACW	2 cut(s)	296, 549
TauI	GCSGC	1 cut(s)	495
TfiI	GAWTC	1 cut(s)	500
Tru1I	TTAA	3 cut(s)	177, 408, 693
Tru9I	TTAA	3 cut(s)	177, 408, 693
TscAI	CASTG	1 cut(s)	309
TseI	GCWGC	2 cut(s)	641, 883
TspDTI	ATGAA	2 cut(s)	291, 384
TspRI	CASTG	1 cut(s)	309
VpaK11BI	GGWCC	1 cut(s)	511
XapI	RAATTY	3 cut(s)	471, 668, 739
XceI	RCATGY	1 cut(s)	364
XmiI	GTMKAC	2 cut(s)	163, 285
ZrmI	AGTACT	1 cut(s)	551
Zsp2I	ATGCAT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.