Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004357

Physical Location & Seq

Genomic Coordinates Reverse (-)

2708366 .. 2709630

Gene Structure 1265 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g03430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGGATCATCCAACCCACTTGTTGACATGCGAACAGACATCCCTGAACAAGGTGGAGCTGATGGTGATTCAATTTGGGCAAATACACAAAGGGGGAATGTTGGAGGTCCCGATTGGAAGCATGACAACCTTGAGGTGACTTCGTCAGCATCCGTGGGCCCTGACTACTGCAACCAATCCTCTATGCAGGCGCAGAATGGTACGCACCACAAATCAGGTGATGTGGTGGACGCATCATCTACCTTTTCTAATGATGAAGAGGAAGATGATCGGGGGACACATGGCAGCGTTTCATTGGCCTATGATGGTGAAGGAGATGAATCTGAGTCGAAAAGAAGGAAAATTGAAGCCTATGCAACAGAAATGAGTGGAGCTACCAGAGCCATTCGCGAGCCTAGAGTCGTGGTCCAGACAACCAGTGAAGTCGACATCCTTGATGATGGATATCGTTGGCGCAAGTATGGGCAGAAGGTTGTGAAAGGAAATCCAAATCCAAGGAGTTACTACAAGTGCACAAATGCTGGCTGCACTGTGAGAAAGCATGTGGAGAGAGCATCCCATGACCTCAAGTCGGTGATCACCACCTACGAGGGGAAGCACAATCATGATGTTCCTGCTGCTCGAAACAGTAGCCACGTCAATTCCGGCCCTTCCAGCAACATGCCTGGCCAAGCTTCCACTATCCAAACCCACCCACACAGGCCAGAGCCACAAGTTCACAACAGCATGGGGAGATTCGAAAGGCCATCATCAATGGGTTCATTCAACCTACCTGGAAGGCAGCAGATGGGCCCGTCACACGCTTTCTCTTTCGGGATGAACCAGCCTGGCTTCGCCAATCTGTCAATGGCCGGGTTAGGTCCTGGCCAACCGAAACTTTCGGTTCTGCCTTCTCACCATCCTTACTTTGCACAACAACGCCATCAGGTCAATGAGATGGCATTCATGTTACCAAAAGGAGAACCAAAAGTGGAGCCAATGTCAGAACCAGGACTAATCATGTCCAATGGCTCATCAGTATACCAACAGCTTATGAGTAGGCTTCCTCTTGGACCACAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007163 GO:0007275 GO:0007389 GO:0008150 GO:0009266 GO:0009409 GO:0009555 GO:0009628 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009846 GO:0009856 GO:0009880 GO:0009888 GO:0009889 GO:0009942 GO:0009960 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030010 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044706 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

355

Amino Acids

38.63

Weight (kDa)

6.34

Isoelectric Point (pI)

45.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	146 - 203	9.3e-26	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26440 AT5G56270
fragaria_vesca	FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430
malus_domestica	MD03G1044400.v1.1
prunus_persica	Prupe.6G036300_v2.0.a1 Prupe.6G036300_v2.0.a1 Prupe.6G036300_v2.0.a1 Prupe.6G036300_v2.0.a1
pyrus_communis	pycom03g03430
rosa_chinensis	RchiOBHm_Chr5g0074411
rosa_laevigata	RLG00000036473
rosa_multiflora	Rmu_sc0000573.1_g000009
rosa_roxburghii	Rroxscaffold_1G00007130
rosa_rugosa	Rorug05G0430900 Rorug05G0431000 Rorug05G0431100 Rorug05G0431200 Rorug05G0431300 Rorug05G0431400
rosa_samantha	Rh5AG488600 Rh5BG509400 Rh5CG533200 Rh5DG522100
rosa_wichuraiana	Rw5G045310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	426, 1020
AccII	CGCG	1 cut(s)	390
AclWI	GGATC	1 cut(s)	13
AcoI	YGGCCR	3 cut(s)	667, 849, 865
AfaI	GTAC	1 cut(s)	202
AfiI	CCNNNNNNNGG	3 cut(s)	50, 571, 591
AgsI	TTSAA	3 cut(s)	72, 347, 766
AhdI	GACNNNNNGTC	1 cut(s)	568
AjiI	CACGTC	1 cut(s)	637
AjnI	CCWGG	5 cut(s)	664, 772, 826, 862, 988
AluBI	AGCT	4 cut(s)	59, 374, 674, 1030
AluI	AGCT	4 cut(s)	59, 374, 674, 1030
Alw21I	GWGCWC	1 cut(s)	515
Alw44I	GTGCAC	1 cut(s)	511
AlwI	GGATC	1 cut(s)	13
AoxI	GGCC	9 cut(s)	157, 297, 646, 667, 701, 743, 790, 849, 865
ApaI	GGGCCC	2 cut(s)	161, 794
ApaLI	GTGCAC	1 cut(s)	511
ApeKI	GCWGC	4 cut(s)	285, 525, 617, 781
AspLEI	GCGC	2 cut(s)	193, 456
AspS9I	GGNCC	9 cut(s)	107, 157, 158, 406, 647, 790, 791, 860, 1052
AsuC2I	CCSGG	1 cut(s)	853
AsuHPI	GGTGA	7 cut(s)	77, 148, 230, 320, 571, 586, 887
AsuII	TTCGAA	1 cut(s)	738
AvaII	GGWCC	4 cut(s)	107, 406, 860, 1052
BaeGI	GKGCMC	3 cut(s)	161, 515, 794
BalI	TGGCCA	2 cut(s)	669, 867
BanII	GRGCYC	2 cut(s)	161, 794
Bbv12I	GWGCWC	1 cut(s)	515
BbvI	GCAGC	4 cut(s)	297, 512, 604, 793
BccI	CCATC	8 cut(s)	56, 299, 434, 754, 781, 906, 930, 931
BciT130I	CCWGG	5 cut(s)	666, 774, 828, 864, 990
BclI	TGATCA	1 cut(s)	576
BcnI	CCSGG	1 cut(s)	853
BfaI	CTAG	1 cut(s)	396
BisI	GCNGC	4 cut(s)	286, 526, 618, 782
BlsI	GCNGC	4 cut(s)	287, 527, 619, 783
Bme1390I	CCNGG	6 cut(s)	666, 774, 828, 853, 864, 990
Bme18I	GGWCC	4 cut(s)	107, 406, 860, 1052
BmeRI	GACNNNNNGTC	1 cut(s)	568
BmgBI	CACGTC	1 cut(s)	637
BmgT120I	GGNCC	9 cut(s)	107, 157, 158, 406, 647, 790, 791, 860, 1052
BmiI	GGNNCC	4 cut(s)	109, 159, 792, 975
BmrFI	CCNGG	6 cut(s)	666, 774, 828, 853, 864, 990
BmsI	GCATC	3 cut(s)	158, 242, 563
Bpu14I	TTCGAA	1 cut(s)	738
BpuEI	CTTGAG	2 cut(s)	152, 551
BpuMI	CCSGG	1 cut(s)	853
BsaBI	GATNNNNATC	1 cut(s)	444
BsaJI	CCNNGG	2 cut(s)	153, 494
BsaXI	ACNNNNNCTCC	2 cut(s)	965, 995
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 571, 591
Bse1I	ACTGG	1 cut(s)	417
Bse8I	GATNNNNATC	1 cut(s)	444
BseBI	CCWGG	5 cut(s)	666, 774, 828, 864, 990
BseDI	CCNNGG	2 cut(s)	153, 494
BseGI	GGATG	7 cut(s)	8, 39, 149, 429, 554, 822, 898
BseJI	GATNNNNATC	1 cut(s)	444
BseLI	CCNNNNNNNGG	3 cut(s)	50, 571, 591
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	1 cut(s)	417
BseSI	GKGCMC	3 cut(s)	161, 515, 794
BseXI	GCAGC	4 cut(s)	297, 512, 604, 793
BsgI	GTGCAG	1 cut(s)	511
Bsh1236I	CGCG	1 cut(s)	390
BshFI	GGCC	9 cut(s)	159, 299, 648, 669, 703, 745, 792, 851, 867
BsiHKAI	GWGCWC	1 cut(s)	515
BsiSI	CCGG	2 cut(s)	645, 852
BslFI	GGGAC	2 cut(s)	93, 289
BslI	CCNNNNNNNGG	3 cut(s)	50, 571, 591
BsmFI	GGGAC	2 cut(s)	93, 289
BsmI	GAATGC	1 cut(s)	941
BsnI	GGCC	9 cut(s)	159, 299, 648, 669, 703, 745, 792, 851, 867
Bsp119I	TTCGAA	1 cut(s)	738
Bsp120I	GGGCCC	2 cut(s)	157, 790
Bsp1286I	GDGCHC	3 cut(s)	161, 515, 794
Bsp143I	GATC	3 cut(s)	5, 268, 576
Bsp68I	TCGCGA	1 cut(s)	390
BspANI	GGCC	9 cut(s)	159, 299, 648, 669, 703, 745, 792, 851, 867
BspCNI	CTCAG	1 cut(s)	316
BspFNI	CGCG	1 cut(s)	390
BspHI	TCATGA	1 cut(s)	604
BspLI	GGNNCC	4 cut(s)	109, 159, 792, 975
BspPI	GGATC	1 cut(s)	13
BspT104I	TTCGAA	1 cut(s)	738
BsrI	ACTGG	1 cut(s)	417
BssECI	CCNNGG	2 cut(s)	153, 494
BssMI	GATC	3 cut(s)	5, 268, 576
BssNAI	GTATAC	1 cut(s)	1021
BssT1I	CCWWGG	1 cut(s)	494
Bst1107I	GTATAC	1 cut(s)	1021
Bst2UI	CCWGG	5 cut(s)	666, 774, 828, 864, 990
Bst4CI	ACNGT	2 cut(s)	532, 629
Bst6I	CTCTTC	1 cut(s)	252
BstBI	TTCGAA	1 cut(s)	738
BstC8I	GCNNGC	3 cut(s)	189, 392, 523
BstDEI	CTNAG	1 cut(s)	324
BstDSI	CCRYGG	1 cut(s)	153
BstENI	CCTNNNNNAGG	1 cut(s)	48
BstF5I	GGATG	7 cut(s)	8, 39, 149, 429, 554, 822, 898
BstFNI	CGCG	1 cut(s)	390
BstHHI	GCGC	2 cut(s)	193, 456
BstKTI	GATC	3 cut(s)	8, 271, 579
BstMBI	GATC	3 cut(s)	5, 268, 576
BstMWI	GCNNNNNNNGC	2 cut(s)	380, 654
BstNI	CCWGG	5 cut(s)	666, 774, 828, 864, 990
BstNSI	RCATGY	3 cut(s)	31, 545, 664
BstSCI	CCNGG	6 cut(s)	664, 772, 826, 851, 862, 988
BstSLI	GKGCMC	3 cut(s)	161, 515, 794
BstUI	CGCG	1 cut(s)	390
BstV1I	GCAGC	4 cut(s)	297, 512, 604, 793
BstZ17I	GTATAC	1 cut(s)	1021
BsuRI	GGCC	9 cut(s)	159, 299, 648, 669, 703, 745, 792, 851, 867
BtgI	CCRYGG	1 cut(s)	153
BtrI	CACGTC	1 cut(s)	637
BtsCI	GGATG	7 cut(s)	8, 39, 149, 429, 554, 822, 898
BtsIMutI	CAGTG	2 cut(s)	424, 528
BtuMI	TCGCGA	1 cut(s)	390
Cac8I	GCNNGC	3 cut(s)	189, 392, 523
CciI	TCATGA	1 cut(s)	604
CfoI	GCGC	2 cut(s)	193, 456
Cfr13I	GGNCC	9 cut(s)	107, 157, 158, 406, 647, 790, 791, 860, 1052
CseI	GACGC	1 cut(s)	239
Csp6I	GTAC	1 cut(s)	201
CviQI	GTAC	1 cut(s)	201
DdeI	CTNAG	1 cut(s)	324
DpnI	GATC	3 cut(s)	7, 270, 578
DpnII	GATC	3 cut(s)	5, 268, 576
DriI	GACNNNNNGTC	1 cut(s)	568
EaeI	YGGCCR	3 cut(s)	667, 849, 865
Eam1104I	CTCTTC	1 cut(s)	252
Eam1105I	GACNNNNNGTC	1 cut(s)	568
EarI	CTCTTC	1 cut(s)	252
Eco130I	CCWWGG	1 cut(s)	494
Eco24I	GRGCYC	2 cut(s)	161, 794
Eco32I	GATATC	1 cut(s)	446
Eco47I	GGWCC	4 cut(s)	107, 406, 860, 1052
EcoNI	CCTNNNNNAGG	1 cut(s)	48
EcoO109I	RGGNCCY	3 cut(s)	107, 158, 860
EcoRII	CCWGG	5 cut(s)	664, 772, 826, 862, 988
EcoRV	GATATC	1 cut(s)	446
EcoT14I	CCWWGG	1 cut(s)	494
EcoT38I	GRGCYC	2 cut(s)	161, 794
ErhI	CCWWGG	1 cut(s)	494
FaqI	GGGAC	2 cut(s)	93, 289
FbaI	TGATCA	1 cut(s)	576
FblI	GTMKAC	2 cut(s)	426, 1020
Fnu4HI	GCNGC	4 cut(s)	286, 526, 618, 782
FokI	GGATG	6 cut(s)	26, 136, 416, 541, 829, 885
FriOI	GRGCYC	2 cut(s)	161, 794
Fsp4HI	GCNGC	4 cut(s)	286, 526, 618, 782
FspBI	CTAG	1 cut(s)	396
GlaI	GCGC	2 cut(s)	192, 455
GluI	GCNGC	4 cut(s)	286, 526, 618, 782
HaeIII	GGCC	9 cut(s)	159, 299, 648, 669, 703, 745, 792, 851, 867
HapII	CCGG	2 cut(s)	645, 852
HgaI	GACGC	1 cut(s)	239
HhaI	GCGC	2 cut(s)	193, 456
Hin6I	GCGC	2 cut(s)	191, 454
HinP1I	GCGC	2 cut(s)	191, 454
HincII	GTYRAC	2 cut(s)	25, 427
HindII	GTYRAC	2 cut(s)	25, 427
HindIII	AAGCTT	1 cut(s)	672
HinfI	GANTC	5 cut(s)	68, 320, 326, 399, 735
HpaII	CCGG	2 cut(s)	645, 852
HphI	GGTGA	7 cut(s)	77, 148, 230, 320, 571, 586, 887
Hpy166II	GTNNAC	6 cut(s)	25, 229, 427, 513, 718, 1021
Hpy188I	TCNGA	2 cut(s)	325, 985
Hpy188III	TCNNGA	5 cut(s)	110, 389, 409, 605, 814
Hpy8I	GTNNAC	6 cut(s)	25, 229, 427, 513, 718, 1021
HpyAV	CCTTC	6 cut(s)	305, 330, 463, 660, 771, 900
HpyCH4III	ACNGT	2 cut(s)	532, 629
HpyCH4IV	ACGT	1 cut(s)	636
HpyCH4V	TGCA	6 cut(s)	171, 187, 356, 513, 528, 911
HpyF10VI	GCNNNNNNNGC	2 cut(s)	380, 654
HpyF3I	CTNAG	1 cut(s)	324
HpySE526I	ACGT	1 cut(s)	636
HspAI	GCGC	2 cut(s)	191, 454
Ksp22I	TGATCA	1 cut(s)	576
Kzo9I	GATC	3 cut(s)	5, 268, 576
LmnI	GCTCC	3 cut(s)	56, 371, 973
Lsp1109I	GCAGC	4 cut(s)	297, 512, 604, 793
LweI	GCATC	3 cut(s)	158, 242, 563
MaeI	CTAG	1 cut(s)	396
MaeII	ACGT	1 cut(s)	636
MaeIII	GTNAC	4 cut(s)	136, 500, 795, 948
MalI	GATC	3 cut(s)	7, 270, 578
MboI	GATC	3 cut(s)	5, 268, 576
MboII	GAAGA	2 cut(s)	269, 275
MhlI	GDGCHC	3 cut(s)	161, 515, 794
MlsI	TGGCCA	2 cut(s)	669, 867
MluCI	AATT	3 cut(s)	72, 342, 640
MluNI	TGGCCA	2 cut(s)	669, 867
MlyI	GAGTC	2 cut(s)	335, 408
MmeI	TCCRAC	2 cut(s)	36, 82
MnlI	CCTC	7 cut(s)	98, 127, 190, 253, 575, 583, 1056
Mox20I	TGGCCA	2 cut(s)	669, 867
MscI	TGGCCA	2 cut(s)	669, 867
MslI	CAYNNNNRTG	1 cut(s)	603
Msp20I	TGGCCA	2 cut(s)	669, 867
MspI	CCGG	2 cut(s)	645, 852
MspR9I	CCNGG	6 cut(s)	666, 774, 828, 853, 864, 990
Mva1269I	GAATGC	1 cut(s)	941
MvaI	CCWGG	5 cut(s)	666, 774, 828, 864, 990
MvnI	CGCG	1 cut(s)	390
MwoI	GCNNNNNNNGC	2 cut(s)	380, 654
NciI	CCSGG	1 cut(s)	853
NdeII	GATC	3 cut(s)	5, 268, 576
NlaIV	GGNNCC	4 cut(s)	109, 159, 792, 975
NmuCI	GTSAC	2 cut(s)	136, 795
NruI	TCGCGA	1 cut(s)	390
NspI	RCATGY	3 cut(s)	31, 545, 664
NspV	TTCGAA	1 cut(s)	738
PagI	TCATGA	1 cut(s)	604
PctI	GAATGC	1 cut(s)	941
PfeI	GAWTC	3 cut(s)	68, 320, 735
PflFI	GACNNNGTC	1 cut(s)	142
PkrI	GCNGC	4 cut(s)	287, 527, 619, 783
PleI	GAGTC	2 cut(s)	334, 407
PpsI	GAGTC	2 cut(s)	334, 407
PpuMI	RGGWCCY	2 cut(s)	107, 860
Psp5II	RGGWCCY	2 cut(s)	107, 860
Psp6I	CCWGG	5 cut(s)	664, 772, 826, 862, 988
PspGI	CCWGG	5 cut(s)	664, 772, 826, 862, 988
PspN4I	GGNNCC	4 cut(s)	109, 159, 792, 975
PspOMI	GGGCCC	2 cut(s)	157, 790
PspPI	GGNCC	9 cut(s)	107, 157, 158, 406, 647, 790, 791, 860, 1052
PspPPI	RGGWCCY	2 cut(s)	107, 860
PsyI	GACNNNGTC	1 cut(s)	142
RruI	TCGCGA	1 cut(s)	390
RsaI	GTAC	1 cut(s)	202
RsaNI	GTAC	1 cut(s)	201
RseI	CAYNNNNRTG	1 cut(s)	603
SalI	GTCGAC	1 cut(s)	425
SatI	GCNGC	4 cut(s)	286, 526, 618, 782
Sau3AI	GATC	3 cut(s)	5, 268, 576
Sau96I	GGNCC	9 cut(s)	107, 157, 158, 406, 647, 790, 791, 860, 1052
SchI	GAGTC	2 cut(s)	335, 408
ScrFI	CCNGG	6 cut(s)	666, 774, 828, 853, 864, 990
SduI	GDGCHC	3 cut(s)	161, 515, 794
SfaNI	GCATC	3 cut(s)	158, 242, 563
SfuI	TTCGAA	1 cut(s)	738
SinI	GGWCC	4 cut(s)	107, 406, 860, 1052
SmiMI	CAYNNNNRTG	1 cut(s)	603
SmlI	CTYRAG	2 cut(s)	131, 566
SmoI	CTYRAG	2 cut(s)	131, 566
Sse9I	AATT	3 cut(s)	72, 342, 640
SspMI	CTAG	1 cut(s)	396
StyD4I	CCNGG	6 cut(s)	664, 772, 826, 851, 862, 988
StyI	CCWWGG	1 cut(s)	494
TaaI	ACNGT	2 cut(s)	532, 629
TaiI	ACGT	1 cut(s)	639
TaqI	TCGA	4 cut(s)	329, 426, 622, 738
TasI	AATT	3 cut(s)	72, 342, 640
TfiI	GAWTC	3 cut(s)	68, 320, 735
TscAI	CASTG	2 cut(s)	424, 535
TseFI	GTSAC	2 cut(s)	136, 795
TseI	GCWGC	4 cut(s)	285, 525, 617, 781
Tsp45I	GTSAC	2 cut(s)	136, 795
TspDTI	ATGAA	6 cut(s)	270, 282, 333, 750, 833, 934
TspGWI	ACGGA	1 cut(s)	142
TspRI	CASTG	2 cut(s)	424, 535
Tth111I	GACNNNGTC	1 cut(s)	142
VneI	GTGCAC	1 cut(s)	511
VpaK11BI	GGWCC	4 cut(s)	107, 406, 860, 1052
XagI	CCTNNNNNAGG	1 cut(s)	48
XceI	RCATGY	3 cut(s)	31, 545, 664
XcmI	CCANNNNNNNNNTGG	1 cut(s)	844
XmiI	GTMKAC	2 cut(s)	426, 1020
XspI	CTAG	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.