WRKY transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G26440 AT5G56270 |
| fragaria_vesca | FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 |
| malus_domestica | MD03G1044400.v1.1 |
| prunus_persica | Prupe.6G036300_v2.0.a1 Prupe.6G036300_v2.0.a1 Prupe.6G036300_v2.0.a1 Prupe.6G036300_v2.0.a1 |
| pyrus_communis | pycom03g03430 |
| rosa_chinensis | RchiOBHm_Chr5g0074411 |
| rosa_laevigata | RLG00000036473 |
| rosa_multiflora | Rmu_sc0000573.1_g000009 |
| rosa_roxburghii | Rroxscaffold_1G00007130 |
| rosa_rugosa | Rorug05G0430900 Rorug05G0431000 Rorug05G0431100 Rorug05G0431200 Rorug05G0431300 Rorug05G0431400 |
| rosa_samantha | Rh5AG488600 Rh5BG509400 Rh5CG533200 Rh5DG522100 |
| rosa_wichuraiana | Rw5G045310 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 43 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 467, 1202, 1961 |
| AccI | GTMKAC | 1 cut(s) | 2178 |
| AccII | CGCG | 4 cut(s) | 264, 313, 587, 1385 |
| AciI | CCGC | 9 cut(s) | 143, 264, 311, 313, 587, 914, 1134, 1767, 1853 |
| AclI | AACGTT | 1 cut(s) | 21 |
| AclWI | GGATC | 3 cut(s) | 166, 800, 1150 |
| AcoI | YGGCCR | 2 cut(s) | 1819, 1995 |
| AcsI | RAATTY | 4 cut(s) | 187, 439, 473, 688 |
| AcuI | CTGAAG | 1 cut(s) | 728 |
| AdeI | CACNNNGTG | 1 cut(s) | 1202 |
| AfaI | GTAC | 6 cut(s) | 55, 248, 838, 928, 1234, 1354 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 297, 366, 467, 1187, 1202, 1961 |
| AflII | CTTAAG | 1 cut(s) | 1718 |
| AflIII | ACRYGT | 2 cut(s) | 1383, 2157 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 367, 1720 |
| AhlI | ACTAGT | 1 cut(s) | 635 |
| AjnI | CCWGG | 6 cut(s) | 391, 750, 1933, 1992, 2023, 2082 |
| AluBI | AGCT | 8 cut(s) | 296, 748, 794, 1256, 1526, 1826, 1948, 2188 |
| AluI | AGCT | 8 cut(s) | 296, 748, 794, 1256, 1526, 1826, 1948, 2188 |
| Alw21I | GWGCWC | 3 cut(s) | 1016, 1258, 1667 |
| Alw26I | GTCTC | 2 cut(s) | 401, 490 |
| Alw44I | GTGCAC | 2 cut(s) | 1012, 1663 |
| AlwI | GGATC | 3 cut(s) | 166, 800, 1150 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1301, 2147 |
| ApaI | GGGCCC | 2 cut(s) | 1096, 1310 |
| ApaLI | GTGCAC | 2 cut(s) | 1012, 1663 |
| ApeKI | GCWGC | 6 cut(s) | 287, 911, 917, 1677, 1769, 1782 |
| ApoI | RAATTY | 4 cut(s) | 187, 439, 473, 688 |
| AseI | ATTAAT | 1 cut(s) | 515 |
| AspLEI | GCGC | 2 cut(s) | 1608, 2082 |
| AsuC2I | CCSGG | 1 cut(s) | 1989 |
| AsuHPI | GGTGA | 5 cut(s) | 1226, 1297, 1382, 1472, 1723 |
| AvaII | GGWCC | 6 cut(s) | 369, 611, 1193, 1558, 2021, 2210 |
| BaeGI | GKGCMC | 4 cut(s) | 1016, 1096, 1310, 1667 |
| BalI | TGGCCA | 2 cut(s) | 1821, 1997 |
| BanI | GGYRCC | 1 cut(s) | 43 |
| BanII | GRGCYC | 3 cut(s) | 1096, 1258, 1310 |
| Bbv12I | GWGCWC | 3 cut(s) | 1016, 1258, 1667 |
| BbvI | GCAGC | 6 cut(s) | 299, 898, 904, 1664, 1756, 1794 |
| BccI | CCATC | 8 cut(s) | 463, 940, 1205, 1451, 1586, 1857, 1876, 1963 |
| BciT130I | CCWGG | 6 cut(s) | 393, 752, 1935, 1994, 2025, 2084 |
| BciVI | GTATCC | 1 cut(s) | 1002 |
| BclI | TGATCA | 1 cut(s) | 1728 |
| BcnI | CCSGG | 1 cut(s) | 1989 |
| BcoDI | GTCTC | 2 cut(s) | 401, 490 |
| BcuI | ACTAGT | 1 cut(s) | 635 |
| BfaI | CTAG | 4 cut(s) | 416, 618, 636, 1548 |
| BfmI | CTRYAG | 1 cut(s) | 1833 |
| BfoI | RGCGCY | 1 cut(s) | 2083 |
| BfrI | CTTAAG | 1 cut(s) | 1718 |
| BfuI | GTATCC | 1 cut(s) | 1002 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2003 |
| BglII | AGATCT | 1 cut(s) | 335 |
| BisI | GCNGC | 9 cut(s) | 288, 314, 912, 915, 918, 1134, 1678, 1770, 1783 |
| BlsI | GCNGC | 9 cut(s) | 289, 315, 913, 916, 919, 1135, 1679, 1771, 1784 |
| BmcAI | AGTACT | 1 cut(s) | 838 |
| Bme1390I | CCNGG | 7 cut(s) | 393, 752, 1935, 1989, 1994, 2025, 2084 |
| Bme18I | GGWCC | 6 cut(s) | 369, 611, 1193, 1558, 2021, 2210 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 367, 1720 |
| BmrFI | CCNGG | 7 cut(s) | 393, 752, 1935, 1989, 1994, 2025, 2084 |
| BmrI | ACTGGG | 1 cut(s) | 1925 |
| BmsI | GCATC | 5 cut(s) | 672, 1027, 1307, 1715, 1951 |
| BmuI | ACTGGG | 1 cut(s) | 1925 |
| BpmI | CTGGAG | 1 cut(s) | 734 |
| BpuEI | CTTGAG | 3 cut(s) | 88, 147, 1301 |
| BpuMI | CCSGG | 1 cut(s) | 1989 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1596 |
| BsaI | GGTCTC | 1 cut(s) | 401 |
| BsaJI | CCNNGG | 6 cut(s) | 311, 714, 809, 906, 1646, 1960 |
| BsaWI | WCCGGW | 1 cut(s) | 1861 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 297, 366, 467, 1187, 1202, 1961 |
| Bse1I | ACTGG | 4 cut(s) | 472, 679, 1569, 1920 |
| Bse3DI | GCAATG | 2 cut(s) | 208, 2013 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1596 |
| BseBI | CCWGG | 6 cut(s) | 393, 752, 1935, 1994, 2025, 2084 |
| BseDI | CCNNGG | 6 cut(s) | 311, 714, 809, 906, 1646, 1960 |
| BseGI | GGATG | 7 cut(s) | 932, 1018, 1176, 1706, 1849, 1955, 2059 |
| BseJI | GATNNNNATC | 1 cut(s) | 1596 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 297, 366, 467, 1187, 1202, 1961 |
| BseMI | GCAATG | 2 cut(s) | 208, 2013 |
| BseMII | CTCAG | 4 cut(s) | 412, 813, 831, 1358 |
| BseNI | ACTGG | 4 cut(s) | 472, 679, 1569, 1920 |
| BseRI | GAGGAG | 1 cut(s) | 1104 |
| BseSI | GKGCMC | 4 cut(s) | 1016, 1096, 1310, 1667 |
| BseXI | GCAGC | 6 cut(s) | 299, 898, 904, 1664, 1756, 1794 |
| BseYI | CCCAGC | 5 cut(s) | 125, 296, 659, 1948, 2012 |
| BsgI | GTGCAG | 1 cut(s) | 1663 |
| Bsh1236I | CGCG | 4 cut(s) | 264, 313, 587, 1385 |
| BshNI | GGYRCC | 1 cut(s) | 43 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1016, 1258, 1667 |
| BsiSI | CCGG | 2 cut(s) | 1862, 1989 |
| BslFI | GGGAC | 2 cut(s) | 355, 1441 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 297, 366, 467, 1187, 1202, 1961 |
| BsmAI | GTCTC | 2 cut(s) | 401, 490 |
| BsmFI | GGGAC | 2 cut(s) | 355, 1441 |
| BsmI | GAATGC | 2 cut(s) | 844, 1839 |
| Bso31I | GGTCTC | 1 cut(s) | 401 |
| Bsp120I | GGGCCC | 2 cut(s) | 1092, 1306 |
| Bsp1286I | GDGCHC | 5 cut(s) | 1016, 1096, 1258, 1310, 1667 |
| Bsp19I | CCATGG | 2 cut(s) | 906, 1960 |
| BspACI | CCGC | 9 cut(s) | 143, 264, 311, 313, 587, 914, 1134, 1767, 1853 |
| BspCNI | CTCAG | 4 cut(s) | 411, 812, 832, 1357 |
| BspFNI | CGCG | 4 cut(s) | 264, 313, 587, 1385 |
| BspHI | TCATGA | 2 cut(s) | 1057, 1756 |
| BspMAI | CTGCAG | 1 cut(s) | 1837 |
| BspPI | GGATC | 3 cut(s) | 166, 800, 1150 |
| BspT107I | GGYRCC | 1 cut(s) | 43 |
| BspTI | CTTAAG | 1 cut(s) | 1718 |
| BspTNI | GGTCTC | 1 cut(s) | 401 |
| BsrDI | GCAATG | 2 cut(s) | 208, 2013 |
| BsrI | ACTGG | 4 cut(s) | 472, 679, 1569, 1920 |
| BssECI | CCNNGG | 6 cut(s) | 311, 714, 809, 906, 1646, 1960 |
| BssNAI | GTATAC | 1 cut(s) | 2179 |
| BssT1I | CCWWGG | 5 cut(s) | 714, 809, 906, 1646, 1960 |
| Bst1107I | GTATAC | 1 cut(s) | 2179 |
| Bst2UI | CCWGG | 6 cut(s) | 393, 752, 1935, 1994, 2025, 2084 |
| Bst4CI | ACNGT | 2 cut(s) | 826, 1684 |
| Bst6I | CTCTTC | 2 cut(s) | 82, 1336 |
| BstAFI | CTTAAG | 1 cut(s) | 1718 |
| BstC8I | GCNNGC | 5 cut(s) | 7, 1016, 1341, 1675, 1837 |
| BstDEI | CTNAG | 4 cut(s) | 398, 799, 840, 1344 |
| BstDSI | CCRYGG | 3 cut(s) | 311, 906, 1960 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1185 |
| BstF5I | GGATG | 7 cut(s) | 932, 1018, 1176, 1706, 1849, 1955, 2059 |
| BstFNI | CGCG | 4 cut(s) | 264, 313, 587, 1385 |
| BstH2I | RGCGCY | 1 cut(s) | 2083 |
| BstHHI | GCGC | 2 cut(s) | 1608, 2082 |
| BstMAI | GTCTC | 2 cut(s) | 401, 490 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 293, 800, 917, 1532, 1832, 2003 |
| BstNI | CCWGG | 6 cut(s) | 393, 752, 1935, 1994, 2025, 2084 |
| BstNSI | RCATGY | 3 cut(s) | 1168, 1697, 2161 |
| BstSCI | CCNGG | 7 cut(s) | 391, 750, 1933, 1987, 1992, 2023, 2082 |
| BstSFI | CTRYAG | 1 cut(s) | 1833 |
| BstSLI | GKGCMC | 4 cut(s) | 1016, 1096, 1310, 1667 |
| BstUI | CGCG | 4 cut(s) | 264, 313, 587, 1385 |
| BstV1I | GCAGC | 6 cut(s) | 299, 898, 904, 1664, 1756, 1794 |
| BstX2I | RGATCY | 3 cut(s) | 158, 335, 805 |
| BstYI | RGATCY | 3 cut(s) | 158, 335, 805 |
| BstZ17I | GTATAC | 1 cut(s) | 2179 |
| BsuI | GTATCC | 1 cut(s) | 1002 |
| BtgI | CCRYGG | 3 cut(s) | 311, 906, 1960 |
| BtsCI | GGATG | 7 cut(s) | 932, 1018, 1176, 1706, 1849, 1955, 2059 |
| BtsI | GCAGTG | 1 cut(s) | 1444 |
| BtsIMutI | CAGTG | 5 cut(s) | 1444, 1576, 1689, 1731, 1913 |
| Cac8I | GCNNGC | 5 cut(s) | 7, 1016, 1341, 1675, 1837 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1301, 2147 |
| CciI | TCATGA | 2 cut(s) | 1057, 1756 |
| CfoI | GCGC | 2 cut(s) | 1608, 2082 |
| Cfr42I | CCGCGG | 1 cut(s) | 314 |
| CseI | GACGC | 2 cut(s) | 1374, 1391 |
| Csp6I | GTAC | 6 cut(s) | 54, 247, 837, 927, 1233, 1353 |
| CviQI | GTAC | 6 cut(s) | 54, 247, 837, 927, 1233, 1353 |
| DdeI | CTNAG | 4 cut(s) | 398, 799, 840, 1344 |
| DraIII | CACNNNGTG | 1 cut(s) | 1202 |
| DriI | GACNNNNNGTC | 2 cut(s) | 367, 1720 |
| EaeI | YGGCCR | 2 cut(s) | 1819, 1995 |
| Eam1104I | CTCTTC | 2 cut(s) | 82, 1336 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 367, 1720 |
| EarI | CTCTTC | 2 cut(s) | 82, 1336 |
| Ecl136II | GAGCTC | 1 cut(s) | 1256 |
| Eco130I | CCWWGG | 5 cut(s) | 714, 809, 906, 1646, 1960 |
| Eco147I | AGGCCT | 1 cut(s) | 1906 |
| Eco24I | GRGCYC | 3 cut(s) | 1096, 1258, 1310 |
| Eco31I | GGTCTC | 1 cut(s) | 401 |
| Eco32I | GATATC | 2 cut(s) | 1582, 1598 |
| Eco47I | GGWCC | 6 cut(s) | 369, 611, 1193, 1558, 2021, 2210 |
| Eco53kI | GAGCTC | 1 cut(s) | 1256 |
| Eco57I | CTGAAG | 1 cut(s) | 728 |
| EcoICRI | GAGCTC | 1 cut(s) | 1256 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1185 |
| EcoO109I | RGGNCCY | 3 cut(s) | 526, 1092, 1307 |
| EcoRII | CCWGG | 6 cut(s) | 391, 750, 1933, 1992, 2023, 2082 |
| EcoRV | GATATC | 2 cut(s) | 1582, 1598 |
| EcoT14I | CCWWGG | 5 cut(s) | 714, 809, 906, 1646, 1960 |
| EcoT38I | GRGCYC | 3 cut(s) | 1096, 1258, 1310 |
| ErhI | CCWWGG | 5 cut(s) | 714, 809, 906, 1646, 1960 |
| FaqI | GGGAC | 2 cut(s) | 355, 1441 |
| FauI | CCCGC | 1 cut(s) | 1774 |
| FauNDI | CATATG | 1 cut(s) | 1738 |
| FbaI | TGATCA | 1 cut(s) | 1728 |
| FblI | GTMKAC | 1 cut(s) | 2178 |
| Fnu4HI | GCNGC | 9 cut(s) | 288, 314, 912, 915, 918, 1134, 1678, 1770, 1783 |
| FokI | GGATG | 7 cut(s) | 919, 1005, 1163, 1693, 1836, 1942, 2046 |
| FriOI | GRGCYC | 3 cut(s) | 1096, 1258, 1310 |
| Fsp4HI | GCNGC | 9 cut(s) | 288, 314, 912, 915, 918, 1134, 1678, 1770, 1783 |
| FspBI | CTAG | 4 cut(s) | 416, 618, 636, 1548 |
| GlaI | GCGC | 2 cut(s) | 1607, 2081 |
| GluI | GCNGC | 9 cut(s) | 288, 314, 912, 915, 918, 1134, 1678, 1770, 1783 |
| GsaI | CCCAGC | 5 cut(s) | 129, 300, 663, 1952, 2016 |
| GsuI | CTGGAG | 1 cut(s) | 734 |
| HaeII | RGCGCY | 1 cut(s) | 2083 |
| HapII | CCGG | 2 cut(s) | 1862, 1989 |
| HgaI | GACGC | 2 cut(s) | 1374, 1391 |
| HhaI | GCGC | 2 cut(s) | 1608, 2082 |
| Hin6I | GCGC | 2 cut(s) | 1606, 2080 |
| HinP1I | GCGC | 2 cut(s) | 1606, 2080 |
| HincII | GTYRAC | 2 cut(s) | 91, 1792 |
| HindII | GTYRAC | 2 cut(s) | 91, 1792 |
| HindIII | AAGCTT | 1 cut(s) | 1824 |
| HinfI | GANTC | 8 cut(s) | 419, 590, 902, 1364, 1472, 1478, 1551, 2144 |
| HpaII | CCGG | 2 cut(s) | 1862, 1989 |
| HphI | GGTGA | 5 cut(s) | 1226, 1297, 1382, 1472, 1723 |
| Hpy188III | TCNNGA | 7 cut(s) | 105, 164, 1058, 1259, 1541, 1561, 1757 |
| Hpy99I | CGWCG | 1 cut(s) | 1128 |
| HpyAV | CCTTC | 9 cut(s) | 79, 161, 610, 872, 1457, 1482, 1615, 1917, 1932 |
| HpyCH4III | ACNGT | 2 cut(s) | 826, 1684 |
| HpyCH4IV | ACGT | 1 cut(s) | 21 |
| HpyCH4V | TGCA | 9 cut(s) | 287, 1014, 1320, 1339, 1508, 1665, 1680, 1835, 2072 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 293, 800, 917, 1532, 1832, 2003 |
| HpyF3I | CTNAG | 4 cut(s) | 398, 799, 840, 1344 |
| HpySE526I | ACGT | 1 cut(s) | 21 |
| HspAI | GCGC | 2 cut(s) | 1606, 2080 |
| Ksp22I | TGATCA | 1 cut(s) | 1728 |
| KspI | CCGCGG | 1 cut(s) | 314 |
| LmnI | GCTCC | 9 cut(s) | 313, 602, 753, 791, 1253, 1261, 1523, 1864, 2131 |
| Lsp1109I | GCAGC | 6 cut(s) | 299, 898, 904, 1664, 1756, 1794 |
| LweI | GCATC | 5 cut(s) | 672, 1027, 1307, 1715, 1951 |
| MaeI | CTAG | 4 cut(s) | 416, 618, 636, 1548 |
| MaeII | ACGT | 1 cut(s) | 21 |
| MaeIII | GTNAC | 4 cut(s) | 192, 1285, 1652, 2106 |
| MflI | RGATCY | 3 cut(s) | 158, 335, 805 |
| MhlI | GDGCHC | 5 cut(s) | 1016, 1096, 1258, 1310, 1667 |
| MlsI | TGGCCA | 2 cut(s) | 1821, 1997 |
| MluI | ACGCGT | 1 cut(s) | 1383 |
| MluNI | TGGCCA | 2 cut(s) | 1821, 1997 |
| MlyI | GAGTC | 3 cut(s) | 413, 1487, 1560 |
| MmeI | TCCRAC | 8 cut(s) | 96, 384, 428, 485, 638, 875, 1231, 1830 |
| Mox20I | TGGCCA | 2 cut(s) | 1821, 1997 |
| MscI | TGGCCA | 2 cut(s) | 1821, 1997 |
| MseI | TTAA | 6 cut(s) | 303, 354, 515, 1035, 1158, 1719 |
| MslI | CAYNNNNRTG | 4 cut(s) | 515, 668, 1437, 1755 |
| Msp20I | TGGCCA | 2 cut(s) | 1821, 1997 |
| MspA1I | CMGCKG | 3 cut(s) | 313, 1769, 1948 |
| MspCI | CTTAAG | 1 cut(s) | 1718 |
| MspI | CCGG | 2 cut(s) | 1862, 1989 |
| MspR9I | CCNGG | 7 cut(s) | 393, 752, 1935, 1989, 1994, 2025, 2084 |
| Mva1269I | GAATGC | 2 cut(s) | 844, 1839 |
| MvaI | CCWGG | 6 cut(s) | 393, 752, 1935, 1994, 2025, 2084 |
| MvnI | CGCG | 4 cut(s) | 264, 313, 587, 1385 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 293, 800, 917, 1532, 1832, 2003 |
| NciI | CCSGG | 1 cut(s) | 1989 |
| NcoI | CCATGG | 2 cut(s) | 906, 1960 |
| NdeI | CATATG | 1 cut(s) | 1738 |
| NmuCI | GTSAC | 2 cut(s) | 192, 1285 |
| NspI | RCATGY | 3 cut(s) | 1168, 1697, 2161 |
| PagI | TCATGA | 2 cut(s) | 1057, 1756 |
| PceI | AGGCCT | 1 cut(s) | 1906 |
| PciI | ACATGT | 1 cut(s) | 2157 |
| PctI | GAATGC | 2 cut(s) | 844, 1839 |
| PfeI | GAWTC | 5 cut(s) | 590, 902, 1364, 1472, 2144 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 467, 1202, 1961 |
| PkrI | GCNGC | 9 cut(s) | 289, 315, 913, 916, 919, 1135, 1679, 1771, 1784 |
| PleI | GAGTC | 3 cut(s) | 413, 1486, 1559 |
| PpsI | GAGTC | 3 cut(s) | 413, 1486, 1559 |
| PscI | ACATGT | 1 cut(s) | 2157 |
| PshBI | ATTAAT | 1 cut(s) | 515 |
| Psp124BI | GAGCTC | 1 cut(s) | 1258 |
| Psp1406I | AACGTT | 1 cut(s) | 21 |
| Psp6I | CCWGG | 6 cut(s) | 391, 750, 1933, 1992, 2023, 2082 |
| PspFI | CCCAGC | 5 cut(s) | 125, 296, 659, 1948, 2012 |
| PspGI | CCWGG | 6 cut(s) | 391, 750, 1933, 1992, 2023, 2082 |
| PspOMI | GGGCCC | 2 cut(s) | 1092, 1306 |
| PstI | CTGCAG | 1 cut(s) | 1837 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1301, 2147 |
| PsuI | RGATCY | 3 cut(s) | 158, 335, 805 |
| PvuII | CAGCTG | 1 cut(s) | 1948 |
| RsaI | GTAC | 6 cut(s) | 55, 248, 838, 928, 1234, 1354 |
| RsaNI | GTAC | 6 cut(s) | 54, 247, 837, 927, 1233, 1353 |
| RseI | CAYNNNNRTG | 4 cut(s) | 515, 668, 1437, 1755 |
| SacI | GAGCTC | 1 cut(s) | 1258 |
| SacII | CCGCGG | 1 cut(s) | 314 |
| SaqAI | TTAA | 6 cut(s) | 303, 354, 515, 1035, 1158, 1719 |
| SatI | GCNGC | 9 cut(s) | 288, 314, 912, 915, 918, 1134, 1678, 1770, 1783 |
| ScaI | AGTACT | 1 cut(s) | 838 |
| SchI | GAGTC | 3 cut(s) | 413, 1487, 1560 |
| ScrFI | CCNGG | 7 cut(s) | 393, 752, 1935, 1989, 1994, 2025, 2084 |
| SduI | GDGCHC | 5 cut(s) | 1016, 1096, 1258, 1310, 1667 |
| SfaNI | GCATC | 5 cut(s) | 672, 1027, 1307, 1715, 1951 |
| SfcI | CTRYAG | 1 cut(s) | 1833 |
| Sfr303I | CCGCGG | 1 cut(s) | 314 |
| SgrBI | CCGCGG | 1 cut(s) | 314 |
| SinI | GGWCC | 6 cut(s) | 369, 611, 1193, 1558, 2021, 2210 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 515, 668, 1437, 1755 |
| SmlI | CTYRAG | 4 cut(s) | 103, 162, 1280, 1718 |
| SmoI | CTYRAG | 4 cut(s) | 103, 162, 1280, 1718 |
| SpeI | ACTAGT | 1 cut(s) | 635 |
| SseBI | AGGCCT | 1 cut(s) | 1906 |
| SsiI | CCGC | 9 cut(s) | 143, 264, 311, 313, 587, 914, 1134, 1767, 1853 |
| SspMI | CTAG | 4 cut(s) | 416, 618, 636, 1548 |
| SstI | GAGCTC | 1 cut(s) | 1258 |
| StuI | AGGCCT | 1 cut(s) | 1906 |
| StyD4I | CCNGG | 7 cut(s) | 391, 750, 1933, 1987, 1992, 2023, 2082 |
| StyI | CCWWGG | 5 cut(s) | 714, 809, 906, 1646, 1960 |
| TaaI | ACNGT | 2 cut(s) | 826, 1684 |
| TaiI | ACGT | 1 cut(s) | 24 |
| TaqI | TCGA | 5 cut(s) | 666, 1126, 1423, 1481, 1774 |
| TaqII | GACCGA | 1 cut(s) | 357 |
| TatI | WGTACW | 4 cut(s) | 53, 246, 836, 1232 |
| TauI | GCSGC | 3 cut(s) | 316, 917, 1136 |
| TfiI | GAWTC | 5 cut(s) | 590, 902, 1364, 1472, 2144 |
| Tru1I | TTAA | 6 cut(s) | 303, 354, 515, 1035, 1158, 1719 |
| Tru9I | TTAA | 6 cut(s) | 303, 354, 515, 1035, 1158, 1719 |
| TscAI | CASTG | 5 cut(s) | 1444, 1576, 1689, 1731, 1920 |
| TseFI | GTSAC | 2 cut(s) | 192, 1285 |
| TseI | GCWGC | 6 cut(s) | 287, 911, 917, 1677, 1769, 1782 |
| Tsp45I | GTSAC | 2 cut(s) | 192, 1285 |
| TspRI | CASTG | 5 cut(s) | 1444, 1576, 1689, 1731, 1920 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 467, 1202, 1961 |
| Vha464I | CTTAAG | 1 cut(s) | 1718 |
| VneI | GTGCAC | 2 cut(s) | 1012, 1663 |
| VpaK11BI | GGWCC | 6 cut(s) | 369, 611, 1193, 1558, 2021, 2210 |
| VspI | ATTAAT | 1 cut(s) | 515 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1185 |
| XapI | RAATTY | 4 cut(s) | 187, 439, 473, 688 |
| XceI | RCATGY | 3 cut(s) | 1168, 1697, 2161 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1793, 2005 |
| XmiI | GTMKAC | 1 cut(s) | 2178 |
| XspI | CTAG | 4 cut(s) | 416, 618, 636, 1548 |
| ZrmI | AGTACT | 1 cut(s) | 838 |