Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004357

Physical Location & Seq

Genomic Coordinates Reverse (-)

59963046 .. 59963730

Gene Structure 685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0431300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGAGTATTAGCCCAACTGGACAGCAGGACCTGGAACAACTGATGAAACTCTGTGATCCTCCAACAAAAGAATTAGAGGAAATCCTCATCGAGTCCACTAACGCTGCTGGTTGCAAGGTAGAAGAACCAAAGGCTTCCGGTTACACGTATCATTGTAGGATTTGCGATGATAATTGTGATCACAGCACTGAGACGTGCCCTGACAGATCTGGAAAATTTATAACAGTTTGCAGGGTTTGTGACTGTCTCCCATGTAAAAATGAGGCTGACCACAAGGAAGACCATTATGAAGATTTATTGTTTTGTCATCTTTGTAATACGATTGGTGAGCACTTGACTGAAATGTGCCCTGACATGGATTCCGACATGGGTGACGAGGACTGGGGTTCTGACATGGATGACGAGAACAGGGATGAGAAGGGTGATTTTCCGGAGAATACACACAGCGCCGCCAATGCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007163 GO:0007275 GO:0007389 GO:0008150 GO:0009266 GO:0009409 GO:0009555 GO:0009628 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009846 GO:0009856 GO:0009880 GO:0009888 GO:0009889 GO:0009942 GO:0009960 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030010 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044706 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

154

Amino Acids

17.26

Weight (kDa)

4.26

Isoelectric Point (pI)

51.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26440 AT5G56270
fragaria_vesca	FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430
malus_domestica	MD03G1044400.v1.1
prunus_persica	Prupe.6G036300_v2.0.a1 Prupe.6G036300_v2.0.a1 Prupe.6G036300_v2.0.a1 Prupe.6G036300_v2.0.a1
pyrus_communis	pycom03g03430
rosa_chinensis	RchiOBHm_Chr5g0074411
rosa_laevigata	RLG00000036473
rosa_multiflora	Rmu_sc0000573.1_g000009
rosa_roxburghii	Rroxscaffold_1G00007130
rosa_rugosa	Rorug05G0430900 Rorug05G0431000 Rorug05G0431100 Rorug05G0431200 Rorug05G0431300 Rorug05G0431400
rosa_samantha	Rh5AG488600 Rh5BG509400 Rh5CG533200 Rh5DG522100
rosa_wichuraiana	Rw5G045310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	221
AccIII	TCCGGA	1 cut(s)	430
AciI	CCGC	1 cut(s)	450
AclWI	GGATC	1 cut(s)	50
AcsI	RAATTY	1 cut(s)	215
AfiI	CCNNNNNNNGG	1 cut(s)	355
AflIII	ACRYGT	1 cut(s)	144
AjiI	CACGTC	1 cut(s)	195
AjnI	CCWGG	1 cut(s)	30
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	2 cut(s)	185, 251
AlwI	GGATC	1 cut(s)	50
AlwNI	CAGNNNCTG	1 cut(s)	31
Aor13HI	TCCGGA	1 cut(s)	430
ApeKI	GCWGC	2 cut(s)	104, 458
ApoI	RAATTY	1 cut(s)	215
AspLEI	GCGC	1 cut(s)	449
AspS9I	GGNCC	1 cut(s)	28
AsuHPI	GGTGA	3 cut(s)	338, 383, 434
AvaII	GGWCC	1 cut(s)	28
BaeGI	GKGCMC	2 cut(s)	200, 350
BbsI	GAAGAC	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	2 cut(s)	91, 445
BciT130I	CCWGG	1 cut(s)	32
BclI	TGATCA	1 cut(s)	178
BcoDI	GTCTC	2 cut(s)	185, 251
BfoI	RGCGCY	1 cut(s)	450
BglII	AGATCT	1 cut(s)	206
BisI	GCNGC	3 cut(s)	105, 450, 459
BlsI	GCNGC	3 cut(s)	106, 451, 460
Bme1390I	CCNGG	1 cut(s)	32
Bme18I	GGWCC	1 cut(s)	28
BmgBI	CACGTC	1 cut(s)	195
BmgT120I	GGNCC	1 cut(s)	28
BmrFI	CCNGG	1 cut(s)	32
BmrI	ACTGGG	1 cut(s)	391
BmuI	ACTGGG	1 cut(s)	391
BpiI	GAAGAC	1 cut(s)	285
BsaAI	YACGTR	1 cut(s)	147
BsaWI	WCCGGW	2 cut(s)	137, 430
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse1I	ACTGG	2 cut(s)	22, 386
BseAI	TCCGGA	1 cut(s)	430
BseBI	CCWGG	1 cut(s)	32
BseGI	GGATG	2 cut(s)	403, 418
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	2 cut(s)	22, 386
BseSI	GKGCMC	2 cut(s)	200, 350
BseXI	GCAGC	2 cut(s)	91, 445
BsiHKAI	GWGCWC	1 cut(s)	333
BsiSI	CCGG	2 cut(s)	138, 431
BslI	CCNNNNNNNGG	1 cut(s)	355
BsmAI	GTCTC	2 cut(s)	185, 251
BsmBI	CGTCTC	1 cut(s)	185
Bsp1286I	GDGCHC	3 cut(s)	200, 333, 350
Bsp13I	TCCGGA	1 cut(s)	430
Bsp143I	GATC	3 cut(s)	55, 178, 206
BspACI	CCGC	1 cut(s)	450
BspCNI	CTCAG	1 cut(s)	181
BspEI	TCCGGA	1 cut(s)	430
BspPI	GGATC	1 cut(s)	50
BsrI	ACTGG	2 cut(s)	22, 386
BssMI	GATC	3 cut(s)	55, 178, 206
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	2 cut(s)	226, 245
BstBAI	YACGTR	1 cut(s)	147
BstDEI	CTNAG	1 cut(s)	189
BstF5I	GGATG	2 cut(s)	403, 418
BstH2I	RGCGCY	1 cut(s)	450
BstHHI	GCGC	1 cut(s)	449
BstKTI	GATC	3 cut(s)	58, 181, 209
BstMAI	GTCTC	2 cut(s)	185, 251
BstMBI	GATC	3 cut(s)	55, 178, 206
BstMWI	GCNNNNNNNGC	2 cut(s)	455, 458
BstNI	CCWGG	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	30
BstSLI	GKGCMC	2 cut(s)	200, 350
BstV1I	GCAGC	2 cut(s)	91, 445
BstV2I	GAAGAC	1 cut(s)	285
BstX2I	RGATCY	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	206
BtgZI	GCGATG	1 cut(s)	180
BtrI	CACGTC	1 cut(s)	195
BtsCI	GGATG	2 cut(s)	403, 418
BtsIMutI	CAGTG	1 cut(s)	186
CaiI	CAGNNNCTG	1 cut(s)	31
CfoI	GCGC	1 cut(s)	449
Cfr13I	GGNCC	1 cut(s)	28
CviAII	CATG	4 cut(s)	252, 355, 367, 394
CviJI	RGCY	3 cut(s)	12, 134, 266
CviKI_1	RGCY	3 cut(s)	12, 134, 266
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	3 cut(s)	57, 180, 208
DpnII	GATC	3 cut(s)	55, 178, 206
Eco47I	GGWCC	1 cut(s)	28
EcoO109I	RGGNCCY	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	30
Esp3I	CGTCTC	1 cut(s)	185
FaeI	CATG	4 cut(s)	255, 358, 370, 397
FaiI	YATR	7 cut(s)	221, 253, 288, 356, 368, 395, 463
FatI	CATG	4 cut(s)	251, 354, 366, 393
FbaI	TGATCA	1 cut(s)	178
Fnu4HI	GCNGC	3 cut(s)	105, 450, 459
FokI	GGATG	2 cut(s)	410, 425
Fsp4HI	GCNGC	3 cut(s)	105, 450, 459
GlaI	GCGC	1 cut(s)	448
GluI	GCNGC	3 cut(s)	105, 450, 459
HaeII	RGCGCY	1 cut(s)	450
HapII	CCGG	2 cut(s)	138, 431
HhaI	GCGC	1 cut(s)	449
Hin1II	CATG	4 cut(s)	255, 358, 370, 397
Hin6I	GCGC	1 cut(s)	447
HinP1I	GCGC	1 cut(s)	447
HinfI	GANTC	2 cut(s)	92, 359
HpaII	CCGG	2 cut(s)	138, 431
HphI	GGTGA	3 cut(s)	338, 383, 434
Hpy166II	GTNNAC	1 cut(s)	96
Hpy188I	TCNGA	2 cut(s)	364, 391
Hpy188III	TCNNGA	2 cut(s)	210, 431
Hpy8I	GTNNAC	1 cut(s)	96
HpyAV	CCTTC	1 cut(s)	412
HpyCH4III	ACNGT	2 cut(s)	226, 245
HpyCH4IV	ACGT	2 cut(s)	146, 194
HpyCH4V	TGCA	3 cut(s)	114, 231, 461
HpyF10VI	GCNNNNNNNGC	2 cut(s)	455, 458
HpyF3I	CTNAG	1 cut(s)	189
HpySE526I	ACGT	2 cut(s)	146, 194
Hsp92II	CATG	4 cut(s)	255, 358, 370, 397
HspAI	GCGC	1 cut(s)	447
Kpn2I	TCCGGA	1 cut(s)	430
Ksp22I	TGATCA	1 cut(s)	178
Kzo9I	GATC	3 cut(s)	55, 178, 206
Lsp1109I	GCAGC	2 cut(s)	91, 445
MaeII	ACGT	2 cut(s)	146, 194
MaeIII	GTNAC	3 cut(s)	140, 239, 371
MalI	GATC	3 cut(s)	57, 180, 208
MboI	GATC	3 cut(s)	55, 178, 206
MboII	GAAGA	3 cut(s)	134, 290, 302
MflI	RGATCY	1 cut(s)	206
MhlI	GDGCHC	3 cut(s)	200, 333, 350
MluCI	AATT	3 cut(s)	71, 172, 215
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	2 cut(s)	86, 387
MnlI	CCTC	5 cut(s)	69, 70, 95, 256, 370
MroI	TCCGGA	1 cut(s)	430
MspI	CCGG	2 cut(s)	138, 431
MspR9I	CCNGG	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	2 cut(s)	455, 458
NdeII	GATC	3 cut(s)	55, 178, 206
NlaIII	CATG	4 cut(s)	255, 358, 370, 397
NmuCI	GTSAC	2 cut(s)	239, 371
PfeI	GAWTC	1 cut(s)	359
PkrI	GCNGC	3 cut(s)	106, 451, 460
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
Ppu21I	YACGTR	1 cut(s)	147
PpuMI	RGGWCCY	1 cut(s)	28
PsiI	TTATAA	1 cut(s)	221
Psp5II	RGGWCCY	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspPI	GGNCC	1 cut(s)	28
PspPPI	RGGWCCY	1 cut(s)	28
PstNI	CAGNNNCTG	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	206
SatI	GCNGC	3 cut(s)	105, 450, 459
Sau3AI	GATC	3 cut(s)	55, 178, 206
Sau96I	GGNCC	1 cut(s)	28
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	32
SduI	GDGCHC	3 cut(s)	200, 333, 350
SetI	ASST	4 cut(s)	33, 120, 149, 197
SinI	GGWCC	1 cut(s)	28
Sse9I	AATT	3 cut(s)	71, 172, 215
SsiI	CCGC	1 cut(s)	450
StyD4I	CCNGG	1 cut(s)	30
TaaI	ACNGT	2 cut(s)	226, 245
TaiI	ACGT	2 cut(s)	149, 197
TaqI	TCGA	1 cut(s)	90
TasI	AATT	3 cut(s)	71, 172, 215
TauI	GCSGC	1 cut(s)	452
TfiI	GAWTC	1 cut(s)	359
TscAI	CASTG	1 cut(s)	193
TseFI	GTSAC	2 cut(s)	239, 371
TseI	GCWGC	2 cut(s)	104, 458
Tsp45I	GTSAC	2 cut(s)	239, 371
TspDTI	ATGAA	2 cut(s)	59, 303
TspRI	CASTG	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	28
XapI	RAATTY	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.