Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004357

Physical Location & Seq

Genomic Coordinates Reverse (-)

59916365 .. 59917546

Gene Structure 1182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0431100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGACTATCTGGAAAACTATATGCAACCTCGTGCACTCGAGGGCACCAGCTATGCTTTCGAATTTTGGTTCAGGGTTTGTGAGGAAGATTATCTGCAATTTCCTTGCCCTGGTTCATCTGTTTAGAGGAAAAAAAGATGCAGCCGCCATGAGTATTAGCCCAACTGGACAGCAGGACCTGGAACAACTGGTGAAACTCTGTGATCCACCAACAACAGAATTAGAGGAAATCCTCATCGAGTCCACTAACGCTGCTGGTTGCAAGGTAGAAGAACCAAAGGCTTCCGATTACACGTATTATTGTAGAATTTGCGATGAGAATTGTGATCACAGCACTAAGACGTGCCCTGACAGATCTGGGAAATTTATAACAGTTTGTAGGGTTTGTGACTGTCTCCCATGTAAAAATGAGGCTGACCACAAGGAAGACCATCATTATGAACGGTTCTTTTTTTGTCATCTTTGTAGTACGATTGGTCAGCACTTGACTGAAATGTGCCCTGACATGGATTCCGACATGGGTGACGAGGACTGGGGTTCTGACATGGATGACGAGAACAGGGATGAGAAGGGTGATTTTCCAGAGAATACACAGAGCGCCGCTAAAGCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007163 GO:0007275 GO:0007389 GO:0008150 GO:0009266 GO:0009409 GO:0009555 GO:0009628 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009846 GO:0009856 GO:0009880 GO:0009888 GO:0009889 GO:0009942 GO:0009960 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030010 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044706 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

204

Amino Acids

22.95

Weight (kDa)

4.83

Isoelectric Point (pI)

43.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26440 AT5G56270
fragaria_vesca	FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430 FvH4_3g41430
malus_domestica	MD03G1044400.v1.1
prunus_persica	Prupe.6G036300_v2.0.a1 Prupe.6G036300_v2.0.a1 Prupe.6G036300_v2.0.a1 Prupe.6G036300_v2.0.a1
pyrus_communis	pycom03g03430
rosa_chinensis	RchiOBHm_Chr5g0074411
rosa_laevigata	RLG00000036473
rosa_multiflora	Rmu_sc0000573.1_g000009
rosa_roxburghii	Rroxscaffold_1G00007130
rosa_rugosa	Rorug05G0430900 Rorug05G0431000 Rorug05G0431100 Rorug05G0431200 Rorug05G0431300 Rorug05G0431400
rosa_samantha	Rh5AG488600 Rh5BG509400 Rh5CG533200 Rh5DG522100
rosa_wichuraiana	Rw5G045310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	368
AccB1I	GGYRCC	1 cut(s)	43
AciI	CCGC	2 cut(s)	144, 600
AclWI	GGATC	1 cut(s)	197
AcsI	RAATTY	3 cut(s)	61, 306, 362
AfaI	GTAC	1 cut(s)	469
AfiI	CCNNNNNNNGG	2 cut(s)	109, 505
AflIII	ACRYGT	1 cut(s)	291
AjiI	CACGTC	1 cut(s)	342
AjnI	CCWGG	2 cut(s)	108, 177
AluBI	AGCT	2 cut(s)	50, 608
AluI	AGCT	2 cut(s)	50, 608
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	1 cut(s)	398
Alw44I	GTGCAC	1 cut(s)	32
AlwI	GGATC	1 cut(s)	197
AlwNI	CAGNNNCTG	1 cut(s)	178
Ama87I	CYCGRG	1 cut(s)	37
ApaLI	GTGCAC	1 cut(s)	32
ApeKI	GCWGC	3 cut(s)	140, 251, 608
ApoI	RAATTY	3 cut(s)	61, 306, 362
AspLEI	GCGC	1 cut(s)	599
AspS9I	GGNCC	1 cut(s)	175
AsuHPI	GGTGA	3 cut(s)	202, 533, 584
AsuII	TTCGAA	1 cut(s)	59
AvaI	CYCGRG	1 cut(s)	37
AvaII	GGWCC	1 cut(s)	175
BaeGI	GKGCMC	4 cut(s)	36, 46, 347, 500
BanI	GGYRCC	1 cut(s)	43
BauI	CACGAG	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	432
Bbv12I	GWGCWC	1 cut(s)	36
BbvI	GCAGC	3 cut(s)	152, 238, 595
BccI	CCATC	1 cut(s)	438
BciT130I	CCWGG	2 cut(s)	110, 179
BclI	TGATCA	1 cut(s)	325
BcoDI	GTCTC	1 cut(s)	398
BfoI	RGCGCY	1 cut(s)	600
BglII	AGATCT	1 cut(s)	353
BisI	GCNGC	5 cut(s)	141, 144, 252, 600, 609
BlsI	GCNGC	5 cut(s)	142, 145, 253, 601, 610
Bme1390I	CCNGG	2 cut(s)	110, 179
Bme18I	GGWCC	1 cut(s)	175
BmeT110I	CYCGRG	1 cut(s)	37
BmgBI	CACGTC	1 cut(s)	342
BmgT120I	GGNCC	1 cut(s)	175
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	2 cut(s)	110, 179
BmrI	ACTGGG	1 cut(s)	541
BmsI	GCATC	1 cut(s)	127
BmuI	ACTGGG	1 cut(s)	541
BpiI	GAAGAC	1 cut(s)	432
Bpu14I	TTCGAA	1 cut(s)	59
BsaAI	YACGTR	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 505
Bse1I	ACTGG	3 cut(s)	169, 192, 536
BseBI	CCWGG	2 cut(s)	110, 179
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	2 cut(s)	553, 568
BseLI	CCNNNNNNNGG	2 cut(s)	109, 505
BseNI	ACTGG	3 cut(s)	169, 192, 536
BseSI	GKGCMC	4 cut(s)	36, 46, 347, 500
BseXI	GCAGC	3 cut(s)	152, 238, 595
BshNI	GGYRCC	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	36
BsiHKCI	CYCGRG	1 cut(s)	37
BslI	CCNNNNNNNGG	2 cut(s)	109, 505
BsmAI	GTCTC	1 cut(s)	398
BsoBI	CYCGRG	1 cut(s)	37
Bsp119I	TTCGAA	1 cut(s)	59
Bsp1286I	GDGCHC	4 cut(s)	36, 46, 347, 500
Bsp143I	GATC	3 cut(s)	202, 325, 353
BspACI	CCGC	2 cut(s)	144, 600
BspLI	GGNNCC	1 cut(s)	45
BspPI	GGATC	1 cut(s)	197
BspT104I	TTCGAA	1 cut(s)	59
BspT107I	GGYRCC	1 cut(s)	43
BsrI	ACTGG	3 cut(s)	169, 192, 536
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	3 cut(s)	202, 325, 353
BssSI	CACGAG	1 cut(s)	29
Bst2BI	CACGAG	1 cut(s)	29
Bst2UI	CCWGG	2 cut(s)	110, 179
Bst4CI	ACNGT	3 cut(s)	373, 392, 444
BstBAI	YACGTR	1 cut(s)	294
BstBI	TTCGAA	1 cut(s)	59
BstDEI	CTNAG	1 cut(s)	336
BstF5I	GGATG	2 cut(s)	553, 568
BstH2I	RGCGCY	1 cut(s)	600
BstHHI	GCGC	1 cut(s)	599
BstKTI	GATC	3 cut(s)	205, 328, 356
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	3 cut(s)	202, 325, 353
BstMWI	GCNNNNNNNGC	2 cut(s)	605, 608
BstNI	CCWGG	2 cut(s)	110, 179
BstSCI	CCNGG	2 cut(s)	108, 177
BstSLI	GKGCMC	4 cut(s)	36, 46, 347, 500
BstV1I	GCAGC	3 cut(s)	152, 238, 595
BstV2I	GAAGAC	1 cut(s)	432
BstX2I	RGATCY	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	353
BtgZI	GCGATG	1 cut(s)	327
BtrI	CACGTC	1 cut(s)	342
BtsCI	GGATG	2 cut(s)	553, 568
CaiI	CAGNNNCTG	1 cut(s)	178
CfoI	GCGC	1 cut(s)	599
Cfr13I	GGNCC	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	468
CviAII	CATG	5 cut(s)	148, 399, 505, 517, 544
CviJI	RGCY	6 cut(s)	50, 143, 159, 281, 413, 608
CviKI_1	RGCY	6 cut(s)	50, 143, 159, 281, 413, 608
CviQI	GTAC	1 cut(s)	468
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	3 cut(s)	204, 327, 355
DpnII	GATC	3 cut(s)	202, 325, 353
Eco47I	GGWCC	1 cut(s)	175
Eco88I	CYCGRG	1 cut(s)	37
EcoO109I	RGGNCCY	1 cut(s)	175
EcoRII	CCWGG	2 cut(s)	108, 177
FaeI	CATG	5 cut(s)	151, 402, 508, 520, 547
FatI	CATG	5 cut(s)	147, 398, 504, 516, 543
FbaI	TGATCA	1 cut(s)	325
Fnu4HI	GCNGC	5 cut(s)	141, 144, 252, 600, 609
FokI	GGATG	2 cut(s)	560, 575
Fsp4HI	GCNGC	5 cut(s)	141, 144, 252, 600, 609
GlaI	GCGC	1 cut(s)	598
GluI	GCNGC	5 cut(s)	141, 144, 252, 600, 609
HaeII	RGCGCY	1 cut(s)	600
HhaI	GCGC	1 cut(s)	599
Hin1II	CATG	5 cut(s)	151, 402, 508, 520, 547
Hin6I	GCGC	1 cut(s)	597
HinP1I	GCGC	1 cut(s)	597
HinfI	GANTC	2 cut(s)	239, 509
HphI	GGTGA	3 cut(s)	202, 533, 584
Hpy166II	GTNNAC	2 cut(s)	34, 243
Hpy188I	TCNGA	3 cut(s)	286, 514, 541
Hpy188III	TCNNGA	2 cut(s)	10, 581
Hpy8I	GTNNAC	2 cut(s)	34, 243
HpyAV	CCTTC	1 cut(s)	562
HpyCH4III	ACNGT	3 cut(s)	373, 392, 444
HpyCH4IV	ACGT	2 cut(s)	293, 341
HpyCH4V	TGCA	6 cut(s)	24, 34, 96, 140, 261, 611
HpyF10VI	GCNNNNNNNGC	2 cut(s)	605, 608
HpyF3I	CTNAG	1 cut(s)	336
HpySE526I	ACGT	2 cut(s)	293, 341
Hsp92II	CATG	5 cut(s)	151, 402, 508, 520, 547
HspAI	GCGC	1 cut(s)	597
Ksp22I	TGATCA	1 cut(s)	325
Kzo9I	GATC	3 cut(s)	202, 325, 353
Lsp1109I	GCAGC	3 cut(s)	152, 238, 595
LweI	GCATC	1 cut(s)	127
MaeII	ACGT	2 cut(s)	293, 341
MaeIII	GTNAC	2 cut(s)	386, 521
MalI	GATC	3 cut(s)	204, 327, 355
MboI	GATC	3 cut(s)	202, 325, 353
MboII	GAAGA	3 cut(s)	97, 281, 437
MflI	RGATCY	1 cut(s)	353
MhlI	GDGCHC	4 cut(s)	36, 46, 347, 500
MluCI	AATT	6 cut(s)	61, 97, 218, 306, 319, 362
MlyI	GAGTC	1 cut(s)	248
MmeI	TCCRAC	1 cut(s)	537
MnlI	CCTC	8 cut(s)	33, 38, 75, 119, 217, 242, 403, 520
MslI	CAYNNNNRTG	1 cut(s)	435
MspR9I	CCNGG	2 cut(s)	110, 179
MvaI	CCWGG	2 cut(s)	110, 179
MwoI	GCNNNNNNNGC	2 cut(s)	605, 608
NdeII	GATC	3 cut(s)	202, 325, 353
NlaIII	CATG	5 cut(s)	151, 402, 508, 520, 547
NlaIV	GGNNCC	1 cut(s)	45
NmuCI	GTSAC	2 cut(s)	386, 521
NspV	TTCGAA	1 cut(s)	59
PaeR7I	CTCGAG	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	509
PkrI	GCNGC	5 cut(s)	142, 145, 253, 601, 610
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
Ppu21I	YACGTR	1 cut(s)	294
PpuMI	RGGWCCY	1 cut(s)	175
PsiI	TTATAA	1 cut(s)	368
Psp5II	RGGWCCY	1 cut(s)	175
Psp6I	CCWGG	2 cut(s)	108, 177
PspGI	CCWGG	2 cut(s)	108, 177
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	1 cut(s)	175
PspPPI	RGGWCCY	1 cut(s)	175
PspXI	VCTCGAGB	1 cut(s)	37
PstNI	CAGNNNCTG	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	353
RsaI	GTAC	1 cut(s)	469
RsaNI	GTAC	1 cut(s)	468
RseI	CAYNNNNRTG	1 cut(s)	435
SatI	GCNGC	5 cut(s)	141, 144, 252, 600, 609
Sau3AI	GATC	3 cut(s)	202, 325, 353
Sau96I	GGNCC	1 cut(s)	175
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	2 cut(s)	110, 179
SduI	GDGCHC	4 cut(s)	36, 46, 347, 500
SetI	ASST	7 cut(s)	30, 52, 180, 267, 296, 344, 610
SfaNI	GCATC	1 cut(s)	127
Sfr274I	CTCGAG	1 cut(s)	37
SfuI	TTCGAA	1 cut(s)	59
SinI	GGWCC	1 cut(s)	175
SlaI	CTCGAG	1 cut(s)	37
SmiMI	CAYNNNNRTG	1 cut(s)	435
SmlI	CTYRAG	1 cut(s)	37
SmoI	CTYRAG	1 cut(s)	37
Sse9I	AATT	6 cut(s)	61, 97, 218, 306, 319, 362
SsiI	CCGC	2 cut(s)	144, 600
StyD4I	CCNGG	2 cut(s)	108, 177
TaaI	ACNGT	3 cut(s)	373, 392, 444
TaiI	ACGT	2 cut(s)	296, 344
TaqI	TCGA	3 cut(s)	38, 59, 237
TasI	AATT	6 cut(s)	61, 97, 218, 306, 319, 362
TauI	GCSGC	2 cut(s)	146, 602
TfiI	GAWTC	1 cut(s)	509
TseFI	GTSAC	2 cut(s)	386, 521
TseI	GCWGC	3 cut(s)	140, 251, 608
Tsp45I	GTSAC	2 cut(s)	386, 521
TspDTI	ATGAA	2 cut(s)	104, 453
VneI	GTGCAC	1 cut(s)	32
VpaK11BI	GGWCC	1 cut(s)	175
XapI	RAATTY	3 cut(s)	61, 306, 362
XhoI	CTCGAG	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.