Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011454

Physical Location & Seq

Genomic Coordinates Forward (+)

23443962 .. 23447244

Gene Structure 3283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G57880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGAGTTCAAGCGTAGCTGAAGCAAATCACACAGAGAAGGAAGAGTCGCTGAGACTGGCAATCGCTGTTTCTCTGCTACGATCTAAGTTTCAGAATCATCAATCTTCTTCTTCTACTTCCCGTTGTTATGTTTCTTCTGAATCTGATGCACTTCGCTGGAAGCAGAAGGCTAAAGAGAGGAAGAAAGAGATTATCAGACTCCAGGAAGATCTCAAGGATGCTGAAAGTTCTTTTCATCGTGACTTATTCCCAGCGAATGCTTCTTGCAAGTGTTATTTCTTTGATAACTTGGGAGTATTCAGCGGTAGGAGGATTGGAGAAGCCTCTGAATCGAGATTTAATGATGTTCTTCGTCGTAGATTTCTCAGACTAGCGCGGAGAAGGAGCAGAAGGAAGTTAACTCGATCATCTCAAAGATTGCAGCCCTCAGAACCGGATTATGAAGAGGAAGCAGAACATCTTAGGATCTCTATAGATTTTCTCCTGGAACTGTCTGAAGCAGACTCCAATGACTCTAACTTCAGCAATTGGTCACATCAGGCTGTAGATTTCATATTCGCTTCACTGAAGAAGTTAATATCGATGGGAAGGAACTTAGAATCTGTTGAAGAATCTATCAGCTTCATGATTACACAGTTGATCACAAGAATGTGCACTCCCGTCAAAGGAAATGAGGTGAAACAACTAGAAACAAGTGTTGGGTTTTATGTCCAACATTTGATCCGTAAACTTGGAAGTGAACCATTCATTGGACAGCGTGCAATCTTTGCTATTTCTCAGAGGATATCCATTTTAGCCGAAAATTTACTATTTATGGATCCATTTGATGAATCATTCCCAGAGATGGATGAGTGCATGTTTATACTGATACAGCTAATTGAGTTCCTTATATGTGACTATTTGTTGCCATGGGCGAATGAAGCATTTGACAATGTTATGTTTGAGGAGTGGATAGCATCAGTAGTACATGCGAGGAAAGCAGTAAAGGCCTTGGAAGAAAGAAATGGGTTGTATCTCCTTTACATGGACCGAGTCACTGGGGAATTAGCTAAACGAGTTGGTCAGATCACATCTTTCCGGGAGGTGGAGCCAGCCATTTTGGACAAAATCTTAGCCTACCAAGAAATAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000280 GO:0003006 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009553 GO:0009555 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0034641 GO:0035825 GO:0042138 GO:0043170 GO:0043934 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0051026 GO:0051276 GO:0051321 GO:0051704 GO:0061982 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

377

Amino Acids

43.66

Weight (kDa)

5.83

Isoelectric Point (pI)

67.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57880
fragaria_vesca	FvH4_1g00730 FvH4_1g00730
malus_domestica	MD15G1150700.v1.1
prunus_persica	Prupe.7G265000_v2.0.a1
pyrus_communis	pycom15g13500
rosa_chinensis	RchiOBHm_Chr2g0085451
rosa_laevigata	RLG00000015689 RLG00000015690 RLG00000015691
rosa_multiflora	Rmu_sc0004926.1_g000021 Rmu_sc0004926.1_g000026 Rmu_sc0007908.1_g000011
rosa_roxburghii	Rroxscaffold_2G00155370
rosa_rugosa	Rorug01G0460500
rosa_samantha	Rh2AG008700 Rh2BG010000 Rh2CG010500 Rh2DG011000
rosa_wichuraiana	Rw2G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	749
AccII	CGCG	1 cut(s)	376
AciI	CCGC	2 cut(s)	303, 376
AclWI	GGATC	4 cut(s)	473, 715, 812, 825
AcsI	RAATTY	1 cut(s)	802
AcuI	CTGAAG	4 cut(s)	39, 505, 516, 587
AfaI	GTAC	1 cut(s)	966
AfiI	CCNNNNNNNGG	5 cut(s)	665, 749, 844, 1024, 1084
AgsI	TTSAA	2 cut(s)	9, 608
AjnI	CCWGG	2 cut(s)	201, 483
AjuI	GAANNNNNNNTTGG	4 cut(s)	681, 713, 732, 764
AluBI	AGCT	4 cut(s)	17, 621, 874, 1049
AluI	AGCT	4 cut(s)	17, 621, 874, 1049
Alw21I	GWGCWC	1 cut(s)	656
Alw26I	GTCTC	1 cut(s)	46
Alw44I	GTGCAC	1 cut(s)	652
AlwI	GGATC	4 cut(s)	473, 715, 812, 825
AoxI	GGCC	1 cut(s)	987
ApaLI	GTGCAC	1 cut(s)	652
ApeKI	GCWGC	1 cut(s)	421
ApoI	RAATTY	1 cut(s)	802
AspLEI	GCGC	1 cut(s)	376
AspS9I	GGNCC	1 cut(s)	1027
AsuC2I	CCSGG	1 cut(s)	1079
AsuHPI	GGTGA	1 cut(s)	688
AvaII	GGWCC	1 cut(s)	1027
BaeGI	GKGCMC	1 cut(s)	656
BamHI	GGATCC	1 cut(s)	817
Bbv12I	GWGCWC	1 cut(s)	656
BbvI	GCAGC	1 cut(s)	433
BccI	CCATC	2 cut(s)	577, 838
BciT130I	CCWGG	2 cut(s)	203, 485
BclI	TGATCA	1 cut(s)	639
BcnI	CCSGG	1 cut(s)	1079
BcoDI	GTCTC	1 cut(s)	46
BfaI	CTAG	2 cut(s)	371, 686
BfmI	CTRYAG	2 cut(s)	471, 543
BglII	AGATCT	1 cut(s)	208
BisI	GCNGC	1 cut(s)	422
BlsI	GCNGC	1 cut(s)	423
Bme1390I	CCNGG	3 cut(s)	203, 485, 1079
Bme18I	GGWCC	1 cut(s)	1027
BmgT120I	GGNCC	1 cut(s)	1027
BmiI	GGNNCC	2 cut(s)	819, 1089
BmrFI	CCNGG	3 cut(s)	203, 485, 1079
BmrI	ACTGGG	1 cut(s)	1047
BmsI	GCATC	3 cut(s)	136, 208, 965
BmuI	ACTGGG	1 cut(s)	1047
BpmI	CTGGAG	1 cut(s)	185
BpuEI	CTTGAG	1 cut(s)	197
BpuMI	CCSGG	1 cut(s)	1079
Bsa29I	ATCGAT	1 cut(s)	581
BsaJI	CCNNGG	2 cut(s)	908, 990
BsaWI	WCCGGW	1 cut(s)	433
Bsc4I	CCNNNNNNNGG	5 cut(s)	665, 749, 844, 1024, 1084
Bse1I	ACTGG	2 cut(s)	60, 1042
BseBI	CCWGG	2 cut(s)	203, 485
BseCI	ATCGAT	1 cut(s)	581
BseDI	CCNNGG	2 cut(s)	908, 990
BseGI	GGATG	2 cut(s)	223, 853
BseLI	CCNNNNNNNGG	5 cut(s)	665, 749, 844, 1024, 1084
BseMII	CTCAG	4 cut(s)	41, 379, 441, 791
BseNI	ACTGG	2 cut(s)	60, 1042
BseRI	GAGGAG	1 cut(s)	959
BseSI	GKGCMC	1 cut(s)	656
BseXI	GCAGC	1 cut(s)	433
BseYI	CCCAGC	1 cut(s)	250
Bsh1236I	CGCG	1 cut(s)	376
BshFI	GGCC	1 cut(s)	989
BshVI	ATCGAT	1 cut(s)	581
BsiHKAI	GWGCWC	1 cut(s)	656
BsiSI	CCGG	2 cut(s)	434, 1078
BslI	CCNNNNNNNGG	5 cut(s)	665, 749, 844, 1024, 1084
BsmAI	GTCTC	1 cut(s)	46
BsmI	GAATGC	1 cut(s)	262
BsnI	GGCC	1 cut(s)	989
Bsp1286I	GDGCHC	1 cut(s)	656
Bsp143I	GATC	8 cut(s)	80, 208, 404, 465, 639, 720, 817, 1065
Bsp19I	CCATGG	1 cut(s)	908
BspACI	CCGC	2 cut(s)	303, 376
BspANI	GGCC	1 cut(s)	989
BspCNI	CTCAG	4 cut(s)	42, 378, 440, 790
BspDI	ATCGAT	1 cut(s)	581
BspFNI	CGCG	1 cut(s)	376
BspHI	TCATGA	1 cut(s)	624
BspLI	GGNNCC	2 cut(s)	819, 1089
BspPI	GGATC	4 cut(s)	473, 715, 812, 825
BsrI	ACTGG	2 cut(s)	60, 1042
BssECI	CCNNGG	2 cut(s)	908, 990
BssMI	GATC	8 cut(s)	80, 208, 404, 465, 639, 720, 817, 1065
BssT1I	CCWWGG	2 cut(s)	908, 990
Bst2UI	CCWGG	2 cut(s)	203, 485
Bst4CI	ACNGT	2 cut(s)	492, 636
Bst6I	CTCTTC	2 cut(s)	36, 438
BstAPI	GCANNNNNTGC	1 cut(s)	767
BstC8I	GCNNGC	2 cut(s)	759, 1092
BstDEI	CTNAG	8 cut(s)	50, 84, 365, 427, 461, 595, 777, 1111
BstDSI	CCRYGG	1 cut(s)	908
BstF5I	GGATG	2 cut(s)	223, 853
BstFNI	CGCG	1 cut(s)	376
BstHHI	GCGC	1 cut(s)	376
BstKTI	GATC	8 cut(s)	83, 211, 407, 468, 642, 723, 820, 1068
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	8 cut(s)	80, 208, 404, 465, 639, 720, 817, 1065
BstMWI	GCNNNNNNNGC	4 cut(s)	767, 920, 977, 986
BstNI	CCWGG	2 cut(s)	203, 485
BstNSI	RCATGY	2 cut(s)	859, 971
BstSCI	CCNGG	3 cut(s)	201, 483, 1077
BstSFI	CTRYAG	2 cut(s)	471, 543
BstSLI	GKGCMC	1 cut(s)	656
BstUI	CGCG	1 cut(s)	376
BstV1I	GCAGC	1 cut(s)	433
BstX2I	RGATCY	3 cut(s)	208, 465, 817
BstYI	RGATCY	3 cut(s)	208, 465, 817
Bsu15I	ATCGAT	1 cut(s)	581
BsuRI	GGCC	1 cut(s)	989
BsuTUI	ATCGAT	1 cut(s)	581
BtgI	CCRYGG	1 cut(s)	908
BtsCI	GGATG	2 cut(s)	223, 853
BtsIMutI	CAGTG	2 cut(s)	563, 1035
Cac8I	GCNNGC	2 cut(s)	759, 1092
CciI	TCATGA	1 cut(s)	624
CfoI	GCGC	1 cut(s)	376
Cfr13I	GGNCC	1 cut(s)	1027
ClaI	ATCGAT	1 cut(s)	581
Csp6I	GTAC	1 cut(s)	965
CviAII	CATG	5 cut(s)	625, 856, 909, 968, 1024
CviQI	GTAC	1 cut(s)	965
DdeI	CTNAG	8 cut(s)	50, 84, 365, 427, 461, 595, 777, 1111
DpnI	GATC	8 cut(s)	82, 210, 406, 467, 641, 722, 819, 1067
DpnII	GATC	8 cut(s)	80, 208, 404, 465, 639, 720, 817, 1065
Eam1104I	CTCTTC	2 cut(s)	36, 438
EarI	CTCTTC	2 cut(s)	36, 438
Eco130I	CCWWGG	2 cut(s)	908, 990
Eco147I	AGGCCT	1 cut(s)	989
Eco32I	GATATC	1 cut(s)	786
Eco47I	GGWCC	1 cut(s)	1027
Eco57I	CTGAAG	4 cut(s)	39, 505, 516, 587
EcoRII	CCWGG	2 cut(s)	201, 483
EcoRV	GATATC	1 cut(s)	786
EcoT14I	CCWWGG	2 cut(s)	908, 990
ErhI	CCWWGG	2 cut(s)	908, 990
FaeI	CATG	5 cut(s)	628, 859, 912, 971, 1027
FatI	CATG	5 cut(s)	624, 855, 908, 967, 1023
FbaI	TGATCA	1 cut(s)	639
Fnu4HI	GCNGC	1 cut(s)	422
FokI	GGATG	2 cut(s)	230, 860
Fsp4HI	GCNGC	1 cut(s)	422
FspBI	CTAG	2 cut(s)	371, 686
GlaI	GCGC	1 cut(s)	375
GluI	GCNGC	1 cut(s)	422
GsaI	CCCAGC	1 cut(s)	254
GsuI	CTGGAG	1 cut(s)	185
HaeIII	GGCC	1 cut(s)	989
HapII	CCGG	2 cut(s)	434, 1078
HhaI	GCGC	1 cut(s)	376
Hin1II	CATG	5 cut(s)	628, 859, 912, 971, 1027
Hin6I	GCGC	1 cut(s)	374
HinP1I	GCGC	1 cut(s)	374
HincII	GTYRAC	1 cut(s)	399
HindII	GTYRAC	1 cut(s)	399
HpaI	GTTAAC	1 cut(s)	399
HpaII	CCGG	2 cut(s)	434, 1078
HphI	GGTGA	1 cut(s)	688
Hpy166II	GTNNAC	4 cut(s)	399, 654, 728, 740
Hpy188III	TCNNGA	3 cut(s)	239, 333, 625
Hpy8I	GTNNAC	4 cut(s)	399, 654, 728, 740
Hpy99I	CGWCG	1 cut(s)	357
HpyAV	CCTTC	5 cut(s)	31, 160, 375, 384, 582
HpyCH4III	ACNGT	2 cut(s)	492, 636
HpyCH4V	TGCA	6 cut(s)	149, 267, 421, 654, 761, 855
HpyF10VI	GCNNNNNNNGC	4 cut(s)	767, 920, 977, 986
HpyF3I	CTNAG	8 cut(s)	50, 84, 365, 427, 461, 595, 777, 1111
Hsp92II	CATG	5 cut(s)	628, 859, 912, 971, 1027
HspAI	GCGC	1 cut(s)	374
Ksp22I	TGATCA	1 cut(s)	639
KspAI	GTTAAC	1 cut(s)	399
Kzo9I	GATC	8 cut(s)	80, 208, 404, 465, 639, 720, 817, 1065
LmnI	GCTCC	2 cut(s)	384, 1087
Lsp1109I	GCAGC	1 cut(s)	433
LweI	GCATC	3 cut(s)	136, 208, 965
MaeI	CTAG	2 cut(s)	371, 686
MaeIII	GTNAC	4 cut(s)	239, 531, 893, 1033
MalI	GATC	8 cut(s)	82, 210, 406, 467, 641, 722, 819, 1067
MboI	GATC	8 cut(s)	80, 208, 404, 465, 639, 720, 817, 1065
MfeI	CAATTG	1 cut(s)	526
MflI	RGATCY	3 cut(s)	208, 465, 817
MhlI	GDGCHC	1 cut(s)	656
MluCI	AATT	4 cut(s)	526, 802, 876, 1043
MlyI	GAGTC	5 cut(s)	53, 192, 497, 506, 1041
MmeI	TCCRAC	1 cut(s)	736
MseI	TTAA	3 cut(s)	339, 398, 575
MslI	CAYNNNNRTG	1 cut(s)	647
MspA1I	CMGCKG	1 cut(s)	303
MspI	CCGG	2 cut(s)	434, 1078
MspR9I	CCNGG	3 cut(s)	203, 485, 1079
MunI	CAATTG	1 cut(s)	526
Mva1269I	GAATGC	1 cut(s)	262
MvaI	CCWGG	2 cut(s)	203, 485
MvnI	CGCG	1 cut(s)	376
MwoI	GCNNNNNNNGC	4 cut(s)	767, 920, 977, 986
NciI	CCSGG	1 cut(s)	1079
NcoI	CCATGG	1 cut(s)	908
NdeII	GATC	8 cut(s)	80, 208, 404, 465, 639, 720, 817, 1065
NlaIII	CATG	5 cut(s)	628, 859, 912, 971, 1027
NlaIV	GGNNCC	2 cut(s)	819, 1089
NmuCI	GTSAC	4 cut(s)	239, 531, 893, 1033
NspI	RCATGY	2 cut(s)	859, 971
PagI	TCATGA	1 cut(s)	624
PceI	AGGCCT	1 cut(s)	989
PctI	GAATGC	1 cut(s)	262
PfeI	GAWTC	6 cut(s)	94, 140, 329, 599, 611, 830
PflFI	GACNNNGTC	1 cut(s)	1031
PflMI	CCANNNNNTGG	1 cut(s)	749
PfoI	TCCNGGA	3 cut(s)	201, 483, 1077
PkrI	GCNGC	1 cut(s)	423
PleI	GAGTC	5 cut(s)	52, 192, 497, 506, 1040
PpsI	GAGTC	5 cut(s)	52, 192, 497, 506, 1040
Psp6I	CCWGG	2 cut(s)	201, 483
PspFI	CCCAGC	1 cut(s)	250
PspGI	CCWGG	2 cut(s)	201, 483
PspN4I	GGNNCC	2 cut(s)	819, 1089
PspPI	GGNCC	1 cut(s)	1027
PsuI	RGATCY	3 cut(s)	208, 465, 817
PsyI	GACNNNGTC	1 cut(s)	1031
RsaI	GTAC	1 cut(s)	966
RsaNI	GTAC	1 cut(s)	965
RseI	CAYNNNNRTG	1 cut(s)	647
SaqAI	TTAA	3 cut(s)	339, 398, 575
SatI	GCNGC	1 cut(s)	422
Sau3AI	GATC	8 cut(s)	80, 208, 404, 465, 639, 720, 817, 1065
Sau96I	GGNCC	1 cut(s)	1027
SchI	GAGTC	5 cut(s)	53, 192, 497, 506, 1041
ScrFI	CCNGG	3 cut(s)	203, 485, 1079
SduI	GDGCHC	1 cut(s)	656
SetI	ASST	6 cut(s)	19, 623, 678, 876, 1051, 1086
SfaNI	GCATC	3 cut(s)	136, 208, 965
SfcI	CTRYAG	2 cut(s)	471, 543
SinI	GGWCC	1 cut(s)	1027
SmiMI	CAYNNNNRTG	1 cut(s)	647
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	4 cut(s)	526, 802, 876, 1043
SseBI	AGGCCT	1 cut(s)	989
SsiI	CCGC	2 cut(s)	303, 376
SspMI	CTAG	2 cut(s)	371, 686
StuI	AGGCCT	1 cut(s)	989
StyD4I	CCNGG	3 cut(s)	201, 483, 1077
StyI	CCWWGG	2 cut(s)	908, 990
TaaI	ACNGT	2 cut(s)	492, 636
TaqI	TCGA	3 cut(s)	332, 403, 581
TaqII	GACCGA	1 cut(s)	1044
TasI	AATT	4 cut(s)	526, 802, 876, 1043
TatI	WGTACW	1 cut(s)	964
TfiI	GAWTC	6 cut(s)	94, 140, 329, 599, 611, 830
Tru1I	TTAA	3 cut(s)	339, 398, 575
Tru9I	TTAA	3 cut(s)	339, 398, 575
TscAI	CASTG	2 cut(s)	570, 1042
TseFI	GTSAC	4 cut(s)	239, 531, 893, 1033
TseI	GCWGC	1 cut(s)	421
Tsp45I	GTSAC	4 cut(s)	239, 531, 893, 1033
TspDTI	ATGAA	7 cut(s)	224, 456, 541, 613, 736, 843, 933
TspGWI	ACGGA	1 cut(s)	713
TspRI	CASTG	2 cut(s)	570, 1042
Tth111I	GACNNNGTC	1 cut(s)	1031
Van91I	CCANNNNNTGG	1 cut(s)	749
VneI	GTGCAC	1 cut(s)	652
VpaK11BI	GGWCC	1 cut(s)	1027
XapI	RAATTY	1 cut(s)	802
XceI	RCATGY	2 cut(s)	859, 971
XspI	CTAG	2 cut(s)	371, 686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.