Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004926.1

Orthogroup ID

OG0011454

Physical Location & Seq

Genomic Coordinates Forward (+)

85877 .. 88359

Gene Structure 2483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004926.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

atgtcaagcagcgaacaagagcgatcggcaacaaactcagggccgccggacgagtcgctgcgaatggcggtggccatctctcttctccgatcaaagcttctccaaaagcaaagccactcttctccttctcaaaactccgacgctctccgatggaagcggaaggccaaggagcggaagcaagagcttctgagactccggcaagatctgaaagaagccgaagatgcttcgcagtgtgacctgtttccgcaaagcgcttcctgcaagtgctatttcttcgacagtttggggaagctgagccctaatcggctgccggaagcttctcagtgcagattcaatgacgtcttgcgacgccgatttctcagacacgtgcgtttcaaggaacggagaagaagaaccggcggttcttcccagcggtaccacttttcagacatgaacagtgaagatgaaatggagctgcttagggcctcagttgactttcttgtggagctttgtgaaaccggtactccgcacttgatccgaaaacttggaactggtccctatgttggacaacgtgcactttttgcagtttctctcagagtctccgttctggcagagaatttccttttctcagatccgtttgatgatgcttttacaaacatgcatcaatgcatgttcatactgatccagcttattgagtttttagtgtctgattacctatcagtatggtcaaaggatgaaggttttgacactgtgctcttcgaagagtgggtggcatcagttcttcacgctcgtaaagcattggaacttttggaaagcagaaatgggctatatgcgttatacatggatcgagtcataggtgaattggccaagcatgtgggccttactatgtcactgcagaagatcaaacgcgaaattttagataagctattccactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000280 GO:0003006 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009553 GO:0009555 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0034641 GO:0035825 GO:0042138 GO:0043170 GO:0043934 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0051026 GO:0051276 GO:0051321 GO:0051704 GO:0061982 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

304

Amino Acids

35.11

Weight (kDa)

8.69

Isoelectric Point (pI)

65.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57880
fragaria_vesca	FvH4_1g00730 FvH4_1g00730
malus_domestica	MD15G1150700.v1.1
prunus_persica	Prupe.7G265000_v2.0.a1
pyrus_communis	pycom15g13500
rosa_chinensis	RchiOBHm_Chr2g0085451
rosa_laevigata	RLG00000015689 RLG00000015690 RLG00000015691
rosa_multiflora	Rmu_sc0004926.1_g000021 Rmu_sc0004926.1_g000026 Rmu_sc0007908.1_g000011
rosa_roxburghii	Rroxscaffold_2G00155370
rosa_rugosa	Rorug01G0460500
rosa_samantha	Rh2AG008700 Rh2BG010000 Rh2CG010500 Rh2DG011000
rosa_wichuraiana	Rw2G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	342
Acc65I	GGTACC	1 cut(s)	414
AccB1I	GGYRCC	1 cut(s)	414
AccBSI	CCGCTC	1 cut(s)	172
AccII	CGCG	1 cut(s)	888
AciI	CCGC	8 cut(s)	44, 68, 157, 172, 245, 399, 412, 506
AclWI	GGATC	4 cut(s)	508, 605, 655, 831
AcoI	YGGCCR	2 cut(s)	72, 843
AcsI	RAATTY	2 cut(s)	595, 891
AcvI	CACGTG	1 cut(s)	367
AcyI	GRCGYC	2 cut(s)	339, 349
AfaI	GTAC	2 cut(s)	416, 502
AfeI	AGCGCT	1 cut(s)	253
AfiI	CCNNNNNNNGG	2 cut(s)	171, 542
AflIII	ACRYGT	1 cut(s)	364
AgeI	ACCGGT	1 cut(s)	497
AgsI	TTSAA	2 cut(s)	334, 376
AluBI	AGCT	8 cut(s)	97, 184, 292, 317, 454, 487, 667, 904
AluI	AGCT	8 cut(s)	97, 184, 292, 317, 454, 487, 667, 904
Alw21I	GWGCWC	2 cut(s)	556, 735
Alw26I	GTCTC	2 cut(s)	184, 583
Alw44I	GTGCAC	1 cut(s)	552
AlwI	GGATC	4 cut(s)	508, 605, 655, 831
Aor51HI	AGCGCT	1 cut(s)	253
AoxI	GGCC	6 cut(s)	41, 72, 162, 462, 843, 856
ApaLI	GTGCAC	1 cut(s)	552
ApeKI	GCWGC	4 cut(s)	9, 58, 307, 454
ApoI	RAATTY	2 cut(s)	595, 891
AsiGI	ACCGGT	1 cut(s)	497
Asp718I	GGTACC	1 cut(s)	414
AspLEI	GCGC	1 cut(s)	254
AspS9I	GGNCC	4 cut(s)	41, 462, 533, 856
AsuHPI	GGTGA	1 cut(s)	848
AsuII	TTCGAA	1 cut(s)	738
AvaII	GGWCC	1 cut(s)	533
BaeGI	GKGCMC	1 cut(s)	556
BalI	TGGCCA	2 cut(s)	74, 845
BanI	GGYRCC	1 cut(s)	414
BanII	GRGCYC	1 cut(s)	299
BbrPI	CACGTG	1 cut(s)	367
Bbv12I	GWGCWC	2 cut(s)	556, 735
BbvI	GCAGC	4 cut(s)	21, 45, 294, 441
BccI	CCATC	2 cut(s)	83, 144
BcoDI	GTCTC	2 cut(s)	184, 583
BfmI	CTRYAG	1 cut(s)	872
BfoI	RGCGCY	1 cut(s)	255
BglII	AGATCT	1 cut(s)	202
BisI	GCNGC	5 cut(s)	10, 44, 59, 308, 455
BlpI	GCTNAGC	1 cut(s)	293
BlsI	GCNGC	5 cut(s)	11, 45, 60, 309, 456
Bme18I	GGWCC	1 cut(s)	533
BmgT120I	GGNCC	4 cut(s)	41, 462, 533, 856
BmiI	GGNNCC	2 cut(s)	416, 535
BmsI	GCATC	4 cut(s)	211, 613, 649, 761
Bpu10I	CCTNAGC	1 cut(s)	458
Bpu1102I	GCTNAGC	1 cut(s)	293
Bpu14I	TTCGAA	1 cut(s)	738
BsaAI	YACGTR	1 cut(s)	367
BsaHI	GRCGYC	2 cut(s)	339, 349
BsaJI	CCNNGG	1 cut(s)	165
BsaWI	WCCGGW	1 cut(s)	497
BsaXI	ACNNNNNCTCC	2 cut(s)	487, 517
Bsc4I	CCNNNNNNNGG	2 cut(s)	171, 542
Bse118I	RCCGGY	2 cut(s)	395, 497
Bse1I	ACTGG	1 cut(s)	535
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	1 cut(s)	718
BseLI	CCNNNNNNNGG	2 cut(s)	171, 542
BseMII	CTCAG	8 cut(s)	51, 179, 284, 335, 373, 480, 586, 621
BseNI	ACTGG	1 cut(s)	535
BseSI	GKGCMC	1 cut(s)	556
BseXI	GCAGC	4 cut(s)	21, 45, 294, 441
BseYI	CCCAGC	1 cut(s)	408
BsgI	GTGCAG	1 cut(s)	346
Bsh1236I	CGCG	1 cut(s)	888
Bsh1285I	CGRYCG	1 cut(s)	26
BshFI	GGCC	6 cut(s)	43, 74, 164, 464, 845, 858
BshNI	GGYRCC	1 cut(s)	414
BshTI	ACCGGT	1 cut(s)	497
BsiEI	CGRYCG	1 cut(s)	26
BsiHKAI	GWGCWC	2 cut(s)	556, 735
BsiSI	CCGG	5 cut(s)	47, 196, 311, 396, 498
BslFI	GGGAC	1 cut(s)	519
BslI	CCNNNNNNNGG	2 cut(s)	171, 542
BsmAI	GTCTC	2 cut(s)	184, 583
BsmFI	GGGAC	1 cut(s)	519
BsnI	GGCC	6 cut(s)	43, 74, 164, 464, 845, 858
Bsp119I	TTCGAA	1 cut(s)	738
Bsp1286I	GDGCHC	3 cut(s)	299, 556, 735
Bsp143I	GATC	8 cut(s)	23, 89, 202, 513, 610, 660, 823, 879
Bsp1720I	GCTNAGC	1 cut(s)	293
BspACI	CCGC	8 cut(s)	44, 68, 157, 172, 245, 399, 412, 506
BspANI	GGCC	6 cut(s)	43, 74, 164, 464, 845, 858
BspCNI	CTCAG	8 cut(s)	50, 180, 285, 334, 372, 479, 585, 620
BspFNI	CGCG	1 cut(s)	888
BspLI	GGNNCC	2 cut(s)	416, 535
BspMAI	CTGCAG	1 cut(s)	876
BspPI	GGATC	4 cut(s)	508, 605, 655, 831
BspQI	GCTCTTC	1 cut(s)	740
BspT104I	TTCGAA	1 cut(s)	738
BspT107I	GGYRCC	1 cut(s)	414
BsrBI	CCGCTC	1 cut(s)	172
BsrFI	RCCGGY	2 cut(s)	395, 497
BsrI	ACTGG	1 cut(s)	535
BssAI	RCCGGY	2 cut(s)	395, 497
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	8 cut(s)	23, 89, 202, 513, 610, 660, 823, 879
BssNI	GRCGYC	2 cut(s)	339, 349
BssT1I	CCWWGG	1 cut(s)	165
Bst4CI	ACNGT	3 cut(s)	281, 437, 730
Bst6I	CTCTTC	4 cut(s)	87, 124, 735, 740
BstACI	GRCGYC	2 cut(s)	339, 349
BstAPI	GCANNNNNTGC	1 cut(s)	560
BstBAI	YACGTR	1 cut(s)	367
BstBI	TTCGAA	1 cut(s)	738
BstDEI	CTNAG	9 cut(s)	37, 188, 293, 321, 359, 458, 466, 572, 607
BstF5I	GGATG	1 cut(s)	718
BstFNI	CGCG	1 cut(s)	888
BstH2I	RGCGCY	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	254
BstKTI	GATC	8 cut(s)	26, 92, 205, 516, 613, 663, 826, 882
BstMAI	GTCTC	2 cut(s)	184, 583
BstMBI	GATC	8 cut(s)	23, 89, 202, 513, 610, 660, 823, 879
BstMCI	CGRYCG	1 cut(s)	26
BstMWI	GCNNNNNNNGC	4 cut(s)	221, 258, 560, 773
BstNSI	RCATGY	3 cut(s)	640, 652, 854
BstSFI	CTRYAG	1 cut(s)	872
BstSLI	GKGCMC	1 cut(s)	556
BstUI	CGCG	1 cut(s)	888
BstV1I	GCAGC	4 cut(s)	21, 45, 294, 441
BstX2I	RGATCY	2 cut(s)	202, 610
BstXI	CCANNNNNNTGG	1 cut(s)	853
BstYI	RGATCY	2 cut(s)	202, 610
BsuRI	GGCC	6 cut(s)	43, 74, 164, 464, 845, 858
BtsCI	GGATG	1 cut(s)	718
BtsI	GCAGTG	2 cut(s)	236, 869
BtsIMutI	CAGTG	6 cut(s)	236, 329, 442, 726, 869, 910
CfoI	GCGC	1 cut(s)	254
Cfr10I	RCCGGY	2 cut(s)	395, 497
Cfr13I	GGNCC	4 cut(s)	41, 462, 533, 856
CseI	GACGC	2 cut(s)	149, 357
Csp6I	GTAC	2 cut(s)	415, 501
CspAI	ACCGGT	1 cut(s)	497
CviAII	CATG	5 cut(s)	430, 637, 649, 820, 851
CviQI	GTAC	2 cut(s)	415, 501
DdeI	CTNAG	9 cut(s)	37, 188, 293, 321, 359, 458, 466, 572, 607
DpnI	GATC	8 cut(s)	25, 91, 204, 515, 612, 662, 825, 881
DpnII	GATC	8 cut(s)	23, 89, 202, 513, 610, 660, 823, 879
EaeI	YGGCCR	2 cut(s)	72, 843
Eam1104I	CTCTTC	4 cut(s)	87, 124, 735, 740
EarI	CTCTTC	4 cut(s)	87, 124, 735, 740
Eco130I	CCWWGG	1 cut(s)	165
Eco24I	GRGCYC	1 cut(s)	299
Eco47I	GGWCC	1 cut(s)	533
Eco47III	AGCGCT	1 cut(s)	253
Eco72I	CACGTG	1 cut(s)	367
EcoO109I	RGGNCCY	1 cut(s)	462
EcoT14I	CCWWGG	1 cut(s)	165
EcoT22I	ATGCAT	2 cut(s)	642, 650
EcoT38I	GRGCYC	1 cut(s)	299
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	5 cut(s)	433, 640, 652, 823, 854
FalI	AAGNNNNNCTT	2 cut(s)	103, 135
FaqI	GGGAC	1 cut(s)	519
FatI	CATG	5 cut(s)	429, 636, 648, 819, 850
Fnu4HI	GCNGC	5 cut(s)	10, 44, 59, 308, 455
FokI	GGATG	1 cut(s)	725
FriOI	GRGCYC	1 cut(s)	299
Fsp4HI	GCNGC	5 cut(s)	10, 44, 59, 308, 455
GlaI	GCGC	1 cut(s)	253
GluI	GCNGC	5 cut(s)	10, 44, 59, 308, 455
GsaI	CCCAGC	1 cut(s)	412
HaeII	RGCGCY	1 cut(s)	255
HaeIII	GGCC	6 cut(s)	43, 74, 164, 464, 845, 858
HapII	CCGG	5 cut(s)	47, 196, 311, 396, 498
HgaI	GACGC	2 cut(s)	149, 357
HhaI	GCGC	1 cut(s)	254
Hin1I	GRCGYC	2 cut(s)	339, 349
Hin1II	CATG	5 cut(s)	433, 640, 652, 823, 854
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HindIII	AAGCTT	2 cut(s)	95, 315
HinfI	GANTC	5 cut(s)	53, 192, 330, 576, 828
HpaII	CCGG	5 cut(s)	47, 196, 311, 396, 498
HphI	GGTGA	1 cut(s)	848
Hpy166II	GTNNAC	2 cut(s)	472, 554
Hpy8I	GTNNAC	2 cut(s)	472, 554
Hpy99I	CGWCG	2 cut(s)	143, 351
HpyAV	CCTTC	3 cut(s)	135, 154, 710
HpyCH4III	ACNGT	3 cut(s)	281, 437, 730
HpyCH4IV	ACGT	3 cut(s)	339, 366, 550
HpyCH4V	TGCA	7 cut(s)	261, 327, 554, 563, 640, 648, 874
HpyF10VI	GCNNNNNNNGC	4 cut(s)	221, 258, 560, 773
HpyF3I	CTNAG	9 cut(s)	37, 188, 293, 321, 359, 458, 466, 572, 607
HpySE526I	ACGT	3 cut(s)	339, 366, 550
Hsp92I	GRCGYC	2 cut(s)	339, 349
Hsp92II	CATG	5 cut(s)	433, 640, 652, 823, 854
HspAI	GCGC	1 cut(s)	252
KpnI	GGTACC	1 cut(s)	418
Kzo9I	GATC	8 cut(s)	23, 89, 202, 513, 610, 660, 823, 879
LguI	GCTCTTC	1 cut(s)	740
LmnI	GCTCC	3 cut(s)	169, 451, 484
Lsp1109I	GCAGC	4 cut(s)	21, 45, 294, 441
LweI	GCATC	4 cut(s)	211, 613, 649, 761
MaeII	ACGT	3 cut(s)	339, 366, 550
MaeIII	GTNAC	2 cut(s)	233, 867
MalI	GATC	8 cut(s)	25, 91, 204, 515, 612, 662, 825, 881
MbiI	CCGCTC	1 cut(s)	172
MboI	GATC	8 cut(s)	23, 89, 202, 513, 610, 660, 823, 879
MflI	RGATCY	2 cut(s)	202, 610
MhlI	GDGCHC	3 cut(s)	299, 556, 735
MlsI	TGGCCA	2 cut(s)	74, 845
MluCI	AATT	3 cut(s)	595, 839, 891
MluNI	TGGCCA	2 cut(s)	74, 845
MlyI	GAGTC	4 cut(s)	62, 186, 585, 837
MmeI	TCCRAC	2 cut(s)	162, 523
MnlI	CCTC	1 cut(s)	475
Mox20I	TGGCCA	2 cut(s)	74, 845
Mph1103I	ATGCAT	2 cut(s)	642, 650
MscI	TGGCCA	2 cut(s)	74, 845
Msp20I	TGGCCA	2 cut(s)	74, 845
MspA1I	CMGCKG	1 cut(s)	412
MspI	CCGG	5 cut(s)	47, 196, 311, 396, 498
MvnI	CGCG	1 cut(s)	888
MwoI	GCNNNNNNNGC	4 cut(s)	221, 258, 560, 773
NdeII	GATC	8 cut(s)	23, 89, 202, 513, 610, 660, 823, 879
NlaIII	CATG	5 cut(s)	433, 640, 652, 823, 854
NlaIV	GGNNCC	2 cut(s)	416, 535
NmuCI	GTSAC	2 cut(s)	233, 867
NsiI	ATGCAT	2 cut(s)	642, 650
NspI	RCATGY	3 cut(s)	640, 652, 854
NspV	TTCGAA	1 cut(s)	738
PciSI	GCTCTTC	1 cut(s)	740
PfeI	GAWTC	1 cut(s)	330
PinAI	ACCGGT	1 cut(s)	497
PkrI	GCNGC	5 cut(s)	11, 45, 60, 309, 456
Ple19I	CGATCG	1 cut(s)	26
PleI	GAGTC	4 cut(s)	61, 186, 584, 836
PmaCI	CACGTG	1 cut(s)	367
PmlI	CACGTG	1 cut(s)	367
PpsI	GAGTC	4 cut(s)	61, 186, 584, 836
Ppu21I	YACGTR	1 cut(s)	367
PspCI	CACGTG	1 cut(s)	367
PspFI	CCCAGC	1 cut(s)	408
PspN4I	GGNNCC	2 cut(s)	416, 535
PspPI	GGNCC	4 cut(s)	41, 462, 533, 856
PstI	CTGCAG	1 cut(s)	876
PsuI	RGATCY	2 cut(s)	202, 610
PvuI	CGATCG	1 cut(s)	26
RsaI	GTAC	2 cut(s)	416, 502
RsaNI	GTAC	2 cut(s)	415, 501
SapI	GCTCTTC	1 cut(s)	740
SatI	GCNGC	5 cut(s)	10, 44, 59, 308, 455
Sau3AI	GATC	8 cut(s)	23, 89, 202, 513, 610, 660, 823, 879
Sau96I	GGNCC	4 cut(s)	41, 462, 533, 856
SchI	GAGTC	4 cut(s)	62, 186, 585, 837
SduI	GDGCHC	3 cut(s)	299, 556, 735
SfaNI	GCATC	4 cut(s)	211, 613, 649, 761
SfcI	CTRYAG	1 cut(s)	872
SfuI	TTCGAA	1 cut(s)	738
SinI	GGWCC	1 cut(s)	533
Sse9I	AATT	3 cut(s)	595, 839, 891
SsiI	CCGC	8 cut(s)	44, 68, 157, 172, 245, 399, 412, 506
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	3 cut(s)	281, 437, 730
TaiI	ACGT	3 cut(s)	342, 369, 553
TaqI	TCGA	3 cut(s)	276, 738, 826
TasI	AATT	3 cut(s)	595, 839, 891
TauI	GCSGC	1 cut(s)	46
TfiI	GAWTC	1 cut(s)	330
TscAI	CASTG	5 cut(s)	236, 329, 442, 733, 876
TseFI	GTSAC	2 cut(s)	233, 867
TseI	GCWGC	4 cut(s)	9, 58, 307, 454
Tsp45I	GTSAC	2 cut(s)	233, 867
TspDTI	ATGAA	4 cut(s)	446, 459, 643, 729
TspGWI	ACGGA	3 cut(s)	397, 571, 603
TspRI	CASTG	5 cut(s)	236, 329, 442, 733, 876
VneI	GTGCAC	1 cut(s)	552
VpaK11BI	GGWCC	1 cut(s)	533
XapI	RAATTY	2 cut(s)	595, 891
XceI	RCATGY	3 cut(s)	640, 652, 854
ZraI	GACGTC	1 cut(s)	340
Zsp2I	ATGCAT	2 cut(s)	642, 650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.