RLG00000015690

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
648135 .. 650642
2508 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015690

Sequence Viewer

Length: 1125 bp
ATGTCAAGCAGCGAACAAGAGCGATCGGCAACAAACTCAGCGCCGCCGGACGAGTCGCTGCGAATGGCGGTGGCCATCTCTCTTCTCCGATCAAAGCTTCTCCAAAAGCAAACCCACTCTTCTCCTTCTCAAAACTCCGACGCTCTCCGATGGAAGCGGAAGGCCAAGGAGCGGAAGCAAGAGCTTCTGAGACTCCGGCAAGATCTGAAAGAAGCCGAAGATGCTTCGCAGTGCGACTTGTTTCCGCAAAGCGCTTCCTGCAAGTGCTATTTCTTCGACAATTTGGGGAAGCTGAGCCCTAATCGGCTGCCGGAAGCTTCTCAGTGCAGATTCAACGACGTCTTGCGACGCCGATTTCTCACTCACGTGCGTTTCAAGGAAAGGAGAAGAAGAACTGGCGGTTCTTCCCAGCGGTACCACTTTTCAGACATGAACAGTGAAGATGAAATGCAGCTGCTTAGGGCCTCAGTTGACTTTCTTGTGGAGCTTTGTGAAACCGGTTCTCCGGTGGTGGAGGCTAGTTTTTTGAATTGGTCACACCAAGCGGTAGATTTTATTTTAGCTTCATTGAAGAATCTGTTATCAACTGCAAAGAATGTAGGCCTCATAGAAGGAATTGTCAGCAGCTTAATCACGCGTATGATTACAAGGATGTGTTGCCTCTTGCAAGGAAATGCATCAAAACAATCAGACTCTGATGCACAGTTCTTCGTCCAGCACTTGATCCGAAAACTTGGAACTGGTCCCTATGTTGGACAACGTGCACTTTTTGCAGTTTCTCAGAGAGTCTCTGTTCTGGCAGAGAATTTCCTTTTGTCAGATCCGTTTGATGATGCTTTTACAAACATGCATCAATGCATGTTCATACTGATCCAGCTTATTGAGTTTTTAGTGTCTGATTACCTATCAGTATGGTCAAAGGATGAAGGTTTTGACACTGTGCTCTTCGAAGAGTGGGTGGCATCAGTTCTTCACGCTCGTAAAGCATTGGAAGTTTTGGAAAGCAGAAATGGGCTATATGCGTTATACATGGATCGAGTCGTAGGTGTATTGGCCAAGCATGTGAGCCTTACTATGTCACTGCAGAAGATCAAACGCGAAATTTTAGATAAGCTATTCCACTGA

Protein Analysis

375

Amino Acids

42.69

Weight (kDa)

8.72

Isoelectric Point (pI)

58.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011454)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 342
Acc65I GGTACC 1 cut(s) 414
AccB1I GGYRCC 1 cut(s) 414
AccBSI CCGCTC 1 cut(s) 172
AccII CGCG 2 cut(s) 637, 1098
AciI CCGC 8 cut(s) 44, 68, 157, 172, 245, 399, 412, 545
AclWI GGATC 4 cut(s) 718, 815, 865, 1041
AcoI YGGCCR 2 cut(s) 72, 1053
AcsI RAATTY 2 cut(s) 805, 1101
AcvI CACGTG 1 cut(s) 367
AcyI GRCGYC 2 cut(s) 339, 349
AfaI GTAC 1 cut(s) 416
AfeI AGCGCT 1 cut(s) 253
AfiI CCNNNNNNNGG 2 cut(s) 171, 752
AflIII ACRYGT 1 cut(s) 635
AgeI ACCGGT 1 cut(s) 497
AgsI TTSAA 4 cut(s) 334, 376, 529, 571
AleI CACNNNNGTG 1 cut(s) 365
Alw21I GWGCWC 2 cut(s) 766, 945
Alw26I GTCTC 2 cut(s) 184, 793
Alw44I GTGCAC 1 cut(s) 762
AlwI GGATC 4 cut(s) 718, 815, 865, 1041
AlwNI CAGNNNCTG 1 cut(s) 695
Aor51HI AGCGCT 1 cut(s) 253
AoxI GGCC 5 cut(s) 72, 162, 462, 601, 1053
ApaLI GTGCAC 1 cut(s) 762
ApeKI GCWGC 6 cut(s) 9, 58, 307, 451, 454, 624
ApoI RAATTY 2 cut(s) 805, 1101
AsiGI ACCGGT 1 cut(s) 497
Asp718I GGTACC 1 cut(s) 414
AspLEI GCGC 2 cut(s) 43, 254
AspS9I GGNCC 2 cut(s) 462, 743
AsuII TTCGAA 1 cut(s) 948
AvaII GGWCC 1 cut(s) 743
BaeGI GKGCMC 1 cut(s) 766
BalI TGGCCA 2 cut(s) 74, 1055
BanI GGYRCC 1 cut(s) 414
BanII GRGCYC 1 cut(s) 299
BbrPI CACGTG 1 cut(s) 367
Bbv12I GWGCWC 2 cut(s) 766, 945
BbvI GCAGC 6 cut(s) 21, 45, 294, 441, 463, 636
BccI CCATC 2 cut(s) 83, 144
BcoDI GTCTC 2 cut(s) 184, 793
BfaI CTAG 1 cut(s) 519
BfmI CTRYAG 1 cut(s) 1082
BfoI RGCGCY 2 cut(s) 44, 255
BglII AGATCT 1 cut(s) 202
BisI GCNGC 7 cut(s) 10, 44, 59, 308, 452, 455, 625
BlpI GCTNAGC 1 cut(s) 293
BlsI GCNGC 7 cut(s) 11, 45, 60, 309, 453, 456, 626
Bme18I GGWCC 1 cut(s) 743
BmgT120I GGNCC 2 cut(s) 462, 743
BmiI GGNNCC 2 cut(s) 416, 745
BmsI GCATC 6 cut(s) 211, 686, 688, 823, 859, 971
Bpu10I CCTNAGC 1 cut(s) 458
Bpu1102I GCTNAGC 1 cut(s) 293
Bpu14I TTCGAA 1 cut(s) 948
BsaAI YACGTR 1 cut(s) 367
BsaHI GRCGYC 2 cut(s) 339, 349
BsaJI CCNNGG 1 cut(s) 165
BsaWI WCCGGW 2 cut(s) 497, 505
BsaXI ACNNNNNCTCC 2 cut(s) 487, 517
Bsc4I CCNNNNNNNGG 2 cut(s) 171, 752
Bse118I RCCGGY 1 cut(s) 497
Bse1I ACTGG 2 cut(s) 400, 745
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 2 cut(s) 657, 928
BseLI CCNNNNNNNGG 2 cut(s) 171, 752
BseMII CTCAG 6 cut(s) 51, 179, 284, 335, 480, 794
BseNI ACTGG 2 cut(s) 400, 745
BseSI GKGCMC 1 cut(s) 766
BseXI GCAGC 6 cut(s) 21, 45, 294, 441, 463, 636
BseYI CCCAGC 1 cut(s) 408
BsgI GTGCAG 1 cut(s) 346
Bsh1236I CGCG 2 cut(s) 637, 1098
Bsh1285I CGRYCG 1 cut(s) 26
BshFI GGCC 5 cut(s) 74, 164, 464, 603, 1055
BshNI GGYRCC 1 cut(s) 414
BshTI ACCGGT 1 cut(s) 497
BsiEI CGRYCG 1 cut(s) 26
BsiHKAI GWGCWC 2 cut(s) 766, 945
BsiSI CCGG 5 cut(s) 47, 196, 311, 498, 506
BslFI GGGAC 1 cut(s) 729
BslI CCNNNNNNNGG 2 cut(s) 171, 752
BsmAI GTCTC 2 cut(s) 184, 793
BsmFI GGGAC 1 cut(s) 729
BsnI GGCC 5 cut(s) 74, 164, 464, 603, 1055
Bsp119I TTCGAA 1 cut(s) 948
Bsp1286I GDGCHC 3 cut(s) 299, 766, 945
Bsp143I GATC 8 cut(s) 23, 89, 202, 723, 820, 870, 1033, 1089
Bsp1720I GCTNAGC 1 cut(s) 293
BspACI CCGC 8 cut(s) 44, 68, 157, 172, 245, 399, 412, 545
BspANI GGCC 5 cut(s) 74, 164, 464, 603, 1055
BspCNI CTCAG 6 cut(s) 50, 180, 285, 334, 479, 793
BspFNI CGCG 2 cut(s) 637, 1098
BspLI GGNNCC 2 cut(s) 416, 745
BspMAI CTGCAG 1 cut(s) 1086
BspPI GGATC 4 cut(s) 718, 815, 865, 1041
BspQI GCTCTTC 1 cut(s) 950
BspT104I TTCGAA 1 cut(s) 948
BspT107I GGYRCC 1 cut(s) 414
BsrBI CCGCTC 1 cut(s) 172
BsrFI RCCGGY 1 cut(s) 497
BsrI ACTGG 2 cut(s) 400, 745
BssAI RCCGGY 1 cut(s) 497
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 8 cut(s) 23, 89, 202, 723, 820, 870, 1033, 1089
BssNI GRCGYC 2 cut(s) 339, 349
BssT1I CCWWGG 1 cut(s) 165
Bst4CI ACNGT 3 cut(s) 437, 705, 940
Bst6I CTCTTC 4 cut(s) 87, 124, 945, 950
BstACI GRCGYC 2 cut(s) 339, 349
BstAPI GCANNNNNTGC 1 cut(s) 770
BstBAI YACGTR 1 cut(s) 367
BstBI TTCGAA 1 cut(s) 948
BstDEI CTNAG 7 cut(s) 37, 188, 293, 321, 458, 466, 780
BstF5I GGATG 2 cut(s) 657, 928
BstFNI CGCG 2 cut(s) 637, 1098
BstH2I RGCGCY 2 cut(s) 44, 255
BstHHI GCGC 2 cut(s) 43, 254
BstKTI GATC 8 cut(s) 26, 92, 205, 726, 823, 873, 1036, 1092
BstMAI GTCTC 2 cut(s) 184, 793
BstMBI GATC 8 cut(s) 23, 89, 202, 723, 820, 870, 1033, 1089
BstMCI CGRYCG 1 cut(s) 26
BstMWI GCNNNNNNNGC 4 cut(s) 221, 258, 770, 983
BstNSI RCATGY 3 cut(s) 850, 862, 1064
BstSFI CTRYAG 1 cut(s) 1082
BstSLI GKGCMC 1 cut(s) 766
BstUI CGCG 2 cut(s) 637, 1098
BstV1I GCAGC 6 cut(s) 21, 45, 294, 441, 463, 636
BstX2I RGATCY 2 cut(s) 202, 820
BstYI RGATCY 2 cut(s) 202, 820
BsuRI GGCC 5 cut(s) 74, 164, 464, 603, 1055
BtsCI GGATG 2 cut(s) 657, 928
BtsI GCAGTG 2 cut(s) 236, 1079
BtsIMutI CAGTG 6 cut(s) 236, 329, 442, 936, 1079, 1120
CaiI CAGNNNCTG 1 cut(s) 695
CfoI GCGC 2 cut(s) 43, 254
Cfr10I RCCGGY 1 cut(s) 497
Cfr13I GGNCC 2 cut(s) 462, 743
CseI GACGC 2 cut(s) 149, 357
Csp6I GTAC 1 cut(s) 415
CspAI ACCGGT 1 cut(s) 497
CviAII CATG 5 cut(s) 430, 847, 859, 1030, 1061
CviQI GTAC 1 cut(s) 415
DdeI CTNAG 7 cut(s) 37, 188, 293, 321, 458, 466, 780
DpnI GATC 8 cut(s) 25, 91, 204, 725, 822, 872, 1035, 1091
DpnII GATC 8 cut(s) 23, 89, 202, 723, 820, 870, 1033, 1089
EaeI YGGCCR 2 cut(s) 72, 1053
Eam1104I CTCTTC 4 cut(s) 87, 124, 945, 950
EarI CTCTTC 4 cut(s) 87, 124, 945, 950
Eco130I CCWWGG 1 cut(s) 165
Eco147I AGGCCT 1 cut(s) 603
Eco24I GRGCYC 1 cut(s) 299
Eco47I GGWCC 1 cut(s) 743
Eco47III AGCGCT 1 cut(s) 253
Eco72I CACGTG 1 cut(s) 367
EcoO109I RGGNCCY 1 cut(s) 462
EcoT14I CCWWGG 1 cut(s) 165
EcoT22I ATGCAT 3 cut(s) 679, 852, 860
EcoT38I GRGCYC 1 cut(s) 299
ErhI CCWWGG 1 cut(s) 165
FaeI CATG 5 cut(s) 433, 850, 862, 1033, 1064
FaqI GGGAC 1 cut(s) 729
FatI CATG 5 cut(s) 429, 846, 858, 1029, 1060
Fnu4HI GCNGC 7 cut(s) 10, 44, 59, 308, 452, 455, 625
FokI GGATG 2 cut(s) 664, 935
FriOI GRGCYC 1 cut(s) 299
Fsp4HI GCNGC 7 cut(s) 10, 44, 59, 308, 452, 455, 625
FspBI CTAG 1 cut(s) 519
GlaI GCGC 2 cut(s) 42, 253
GluI GCNGC 7 cut(s) 10, 44, 59, 308, 452, 455, 625
GsaI CCCAGC 1 cut(s) 412
HaeII RGCGCY 2 cut(s) 44, 255
HaeIII GGCC 5 cut(s) 74, 164, 464, 603, 1055
HapII CCGG 5 cut(s) 47, 196, 311, 498, 506
HgaI GACGC 2 cut(s) 149, 357
HhaI GCGC 2 cut(s) 43, 254
Hin1I GRCGYC 2 cut(s) 339, 349
Hin1II CATG 5 cut(s) 433, 850, 862, 1033, 1064
Hin6I GCGC 2 cut(s) 41, 252
HinP1I GCGC 2 cut(s) 41, 252
HincII GTYRAC 1 cut(s) 472
HindII GTYRAC 1 cut(s) 472
HindIII AAGCTT 2 cut(s) 95, 315
HinfI GANTC 7 cut(s) 53, 192, 330, 574, 692, 786, 1038
HpaII CCGG 5 cut(s) 47, 196, 311, 498, 506
Hpy166II GTNNAC 2 cut(s) 472, 764
Hpy8I GTNNAC 2 cut(s) 472, 764
Hpy99I CGWCG 3 cut(s) 143, 341, 351
HpyAV CCTTC 4 cut(s) 135, 154, 605, 920
HpyCH4III ACNGT 3 cut(s) 437, 705, 940
HpyCH4IV ACGT 3 cut(s) 339, 366, 760
HpyF10VI GCNNNNNNNGC 4 cut(s) 221, 258, 770, 983
HpyF3I CTNAG 7 cut(s) 37, 188, 293, 321, 458, 466, 780
HpySE526I ACGT 3 cut(s) 339, 366, 760
Hsp92I GRCGYC 2 cut(s) 339, 349
Hsp92II CATG 5 cut(s) 433, 850, 862, 1033, 1064
HspAI GCGC 2 cut(s) 41, 252
KpnI GGTACC 1 cut(s) 418
Kzo9I GATC 8 cut(s) 23, 89, 202, 723, 820, 870, 1033, 1089
LguI GCTCTTC 1 cut(s) 950
LmnI GCTCC 2 cut(s) 169, 484
Lsp1109I GCAGC 6 cut(s) 21, 45, 294, 441, 463, 636
LweI GCATC 6 cut(s) 211, 686, 688, 823, 859, 971
MaeI CTAG 1 cut(s) 519
MaeII ACGT 3 cut(s) 339, 366, 760
MaeIII GTNAC 2 cut(s) 534, 1077
MalI GATC 8 cut(s) 25, 91, 204, 725, 822, 872, 1035, 1091
MbiI CCGCTC 1 cut(s) 172
MboI GATC 8 cut(s) 23, 89, 202, 723, 820, 870, 1033, 1089
MflI RGATCY 2 cut(s) 202, 820
MhlI GDGCHC 3 cut(s) 299, 766, 945
MlsI TGGCCA 2 cut(s) 74, 1055
MluCI AATT 5 cut(s) 280, 529, 615, 805, 1101
MluI ACGCGT 1 cut(s) 635
MluNI TGGCCA 2 cut(s) 74, 1055
MlyI GAGTC 5 cut(s) 62, 186, 686, 795, 1047
MmeI TCCRAC 2 cut(s) 162, 733
MnlI CCTC 4 cut(s) 475, 508, 614, 671
Mox20I TGGCCA 2 cut(s) 74, 1055
Mph1103I ATGCAT 3 cut(s) 679, 852, 860
MscI TGGCCA 2 cut(s) 74, 1055
MseI TTAA 1 cut(s) 629
MslI CAYNNNNRTG 2 cut(s) 365, 638
Msp20I TGGCCA 2 cut(s) 74, 1055
MspA1I CMGCKG 2 cut(s) 412, 454
MspI CCGG 5 cut(s) 47, 196, 311, 498, 506
MvnI CGCG 2 cut(s) 637, 1098
MwoI GCNNNNNNNGC 4 cut(s) 221, 258, 770, 983
NdeII GATC 8 cut(s) 23, 89, 202, 723, 820, 870, 1033, 1089
NlaIII CATG 5 cut(s) 433, 850, 862, 1033, 1064
NlaIV GGNNCC 2 cut(s) 416, 745
NmuCI GTSAC 2 cut(s) 534, 1077
NsiI ATGCAT 3 cut(s) 679, 852, 860
NspI RCATGY 3 cut(s) 850, 862, 1064
NspV TTCGAA 1 cut(s) 948
OliI CACNNNNGTG 1 cut(s) 365
PceI AGGCCT 1 cut(s) 603
PciSI GCTCTTC 1 cut(s) 950
PfeI GAWTC 2 cut(s) 330, 574
PinAI ACCGGT 1 cut(s) 497
PkrI GCNGC 7 cut(s) 11, 45, 60, 309, 453, 456, 626
Ple19I CGATCG 1 cut(s) 26
PleI GAGTC 5 cut(s) 61, 186, 686, 794, 1046
PmaCI CACGTG 1 cut(s) 367
PmlI CACGTG 1 cut(s) 367
PpsI GAGTC 5 cut(s) 61, 186, 686, 794, 1046
Ppu21I YACGTR 1 cut(s) 367
PspCI CACGTG 1 cut(s) 367
PspFI CCCAGC 1 cut(s) 408
PspN4I GGNNCC 2 cut(s) 416, 745
PspPI GGNCC 2 cut(s) 462, 743
PstI CTGCAG 1 cut(s) 1086
PstNI CAGNNNCTG 1 cut(s) 695
PsuI RGATCY 2 cut(s) 202, 820
PvuI CGATCG 1 cut(s) 26
PvuII CAGCTG 1 cut(s) 454
RsaI GTAC 1 cut(s) 416
RsaNI GTAC 1 cut(s) 415
RseI CAYNNNNRTG 2 cut(s) 365, 638
SapI GCTCTTC 1 cut(s) 950
SaqAI TTAA 1 cut(s) 629
SatI GCNGC 7 cut(s) 10, 44, 59, 308, 452, 455, 625
Sau3AI GATC 8 cut(s) 23, 89, 202, 723, 820, 870, 1033, 1089
Sau96I GGNCC 2 cut(s) 462, 743
SchI GAGTC 5 cut(s) 62, 186, 686, 795, 1047
SduI GDGCHC 3 cut(s) 299, 766, 945
SfaNI GCATC 6 cut(s) 211, 686, 688, 823, 859, 971
SfcI CTRYAG 1 cut(s) 1082
SfuI TTCGAA 1 cut(s) 948
SinI GGWCC 1 cut(s) 743
SmiMI CAYNNNNRTG 2 cut(s) 365, 638
Sse9I AATT 5 cut(s) 280, 529, 615, 805, 1101
SseBI AGGCCT 1 cut(s) 603
SsiI CCGC 8 cut(s) 44, 68, 157, 172, 245, 399, 412, 545
SspMI CTAG 1 cut(s) 519
StuI AGGCCT 1 cut(s) 603
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 3 cut(s) 437, 705, 940
TaiI ACGT 3 cut(s) 342, 369, 763
TaqI TCGA 3 cut(s) 276, 948, 1036
TasI AATT 5 cut(s) 280, 529, 615, 805, 1101
TauI GCSGC 1 cut(s) 46
TfiI GAWTC 2 cut(s) 330, 574
Tru1I TTAA 1 cut(s) 629
Tru9I TTAA 1 cut(s) 629
TscAI CASTG 5 cut(s) 236, 329, 442, 943, 1086
TseFI GTSAC 2 cut(s) 534, 1077
TseI GCWGC 6 cut(s) 9, 58, 307, 451, 454, 624
Tsp45I GTSAC 2 cut(s) 534, 1077
TspDTI ATGAA 5 cut(s) 446, 459, 555, 853, 939
TspGWI ACGGA 1 cut(s) 813
TspRI CASTG 5 cut(s) 236, 329, 442, 943, 1086
VneI GTGCAC 1 cut(s) 762
VpaK11BI GGWCC 1 cut(s) 743
XapI RAATTY 2 cut(s) 805, 1101
XceI RCATGY 3 cut(s) 850, 862, 1064
XspI CTAG 1 cut(s) 519
ZraI GACGTC 1 cut(s) 340
Zsp2I ATGCAT 3 cut(s) 679, 852, 860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.