Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0011454

Physical Location & Seq

Genomic Coordinates Forward (+)

9182574 .. 9185054

Gene Structure 2481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g13500.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGTCCGGCGGCGAACAACAGCAAGTAGCGCAGTCAGTGGCGGACGAGCAGTCGCTGAGGGTAGCCGTCGCCATCTCTCTTCTCCGATCAAAACTTCTCCAAAATCAGCCCCTTCCTCCTCCTCCACCCTCTGTCGATCAATCCGACGCTCTCCGATGGAAGCGAAAGGCCAAGGAGCGAAAGCTCGAGCTTTTGAGACTCCGGCAGGATCTCAACGAAGCTGAAGACGCTTCGCAGTGCGACTTGTTCCCGGAGAGCGCTTCCTGCAAGTGTTATTTCTTCGATGATTTGGGGAAATTAAGCCCTAGCAAGCGGCTTCCAGATCCCTCTCAATGCAGATTCAATGACGTCTTGCGACGCAGATTTCTTCGACACATGCGTTTCAAGGAAAGGAGAAGAAGAAGGACAAGCGGATCGTCCCAGCGCCGCCATTTCTCAGACACAAACAGTGAAGATGAAATGGAGCAGCTTAGAGCTTCGATCGATTTTCTTGTGGAGCTTTGTGAAACCGATTCTCCTGTAGACGATGCTAATTTTGTGAACCGGTCACACCAAGCTGTAGATTTTATTCTAGCTTCACTGAAGAATCTGTTATCCACGGGAAATAATGTGGAACTCATAGAAGGAATTATCAACAGCTTAATCACGCGTTTGGTTAGACGAATGTGTTTGCCGTTGCAGGGAAATGGATCAGAACACTCTGAATCTGAGGCTCAGTTTTTCGTTCAGCATTTGATCCGAAAGCTTGGAAGCCAGCCTTACGTTGGACAACGTGCATTATTCGCAGTTTCTCAGAGAATTTCTGTCCTGGCGGAAAATTTCCTCTCCAAAGATCCATTTGATGATGCTTTTACAAACATGCATCGATGCATGTTCATACTGATCCGGCTTACTGAGTTTTTGGTATCCGATTACTTATCTGAATGGTCAAAGGACGAAGGTTTCAACACCATGCTGTTTGAAGAGTGGGTGGCATCAGTTCTTCAAGCACGTAAAGCATTAGAAGTTTTGGAGAGCAGAAACGGGCTTTATGTGATGTACATGGATCGAGTGGTAGGCGAATTGGCAAGACTTGTGGGCCAAAATATGTCCCTGCAGAAGCTCAATCGTGAAGTTCTTGACAATCTGTTTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000280 GO:0003006 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009553 GO:0009555 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0034641 GO:0035825 GO:0042138 GO:0043170 GO:0043934 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0051026 GO:0051276 GO:0051321 GO:0051704 GO:0061982 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

379

Amino Acids

43.53

Weight (kDa)

6.69

Isoelectric Point (pI)

64.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57880
fragaria_vesca	FvH4_1g00730 FvH4_1g00730
malus_domestica	MD15G1150700.v1.1
prunus_persica	Prupe.7G265000_v2.0.a1
pyrus_communis	pycom15g13500
rosa_chinensis	RchiOBHm_Chr2g0085451
rosa_laevigata	RLG00000015689 RLG00000015690 RLG00000015691
rosa_multiflora	Rmu_sc0004926.1_g000021 Rmu_sc0004926.1_g000026 Rmu_sc0007908.1_g000011
rosa_roxburghii	Rroxscaffold_2G00155370
rosa_rugosa	Rorug01G0460500
rosa_samantha	Rh2AG008700 Rh2BG010000 Rh2CG010500 Rh2DG011000
rosa_wichuraiana	Rw2G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	351
AccI	GTMKAC	1 cut(s)	522
AccII	CGCG	1 cut(s)	649
AciI	CCGC	6 cut(s)	9, 41, 313, 411, 427, 812
AclWI	GGATC	8 cut(s)	216, 317, 421, 697, 730, 827, 877, 1053
AcsI	RAATTY	2 cut(s)	798, 817
AcuI	CTGAAG	2 cut(s)	243, 602
AcyI	GRCGYC	1 cut(s)	348
AfaI	GTAC	1 cut(s)	1040
AfeI	AGCGCT	1 cut(s)	259
AfiI	CCNNNNNNNGG	2 cut(s)	680, 764
AflIII	ACRYGT	1 cut(s)	647
AgeI	ACCGGT	1 cut(s)	543
AgsI	TTSAA	5 cut(s)	343, 385, 946, 962, 986
AhdI	GACNNNNNGTC	1 cut(s)	49
AjnI	CCWGG	1 cut(s)	807
Alw26I	GTCTC	1 cut(s)	190
AlwI	GGATC	8 cut(s)	216, 317, 421, 697, 730, 827, 877, 1053
AlwNI	CAGNNNCTG	1 cut(s)	55
Ama87I	CYCGRG	1 cut(s)	185
Aor51HI	AGCGCT	1 cut(s)	259
AoxI	GGCC	2 cut(s)	168, 1078
ApeKI	GCWGC	1 cut(s)	466
ApoI	RAATTY	2 cut(s)	798, 817
AsiGI	ACCGGT	1 cut(s)	543
AspLEI	GCGC	3 cut(s)	31, 260, 426
AspS9I	GGNCC	1 cut(s)	1078
AsuC2I	CCSGG	1 cut(s)	251
AvaI	CYCGRG	1 cut(s)	185
BbsI	GAAGAC	1 cut(s)	231
BbvCI	CCTCAGC	1 cut(s)	56
BbvI	GCAGC	1 cut(s)	478
BccI	CCATC	2 cut(s)	80, 150
BceAI	ACGGC	2 cut(s)	50, 658
BciT130I	CCWGG	1 cut(s)	809
BciVI	GTATCC	1 cut(s)	916
BcnI	CCSGG	1 cut(s)	251
BcoDI	GTCTC	1 cut(s)	190
BfaI	CTAG	2 cut(s)	306, 572
BfmI	CTRYAG	3 cut(s)	519, 558, 1094
BfoI	RGCGCY	2 cut(s)	261, 427
BfuI	GTATCC	1 cut(s)	916
BisI	GCNGC	4 cut(s)	10, 314, 427, 467
BlsI	GCNGC	4 cut(s)	11, 315, 428, 468
Bme1390I	CCNGG	2 cut(s)	251, 809
BmeRI	GACNNNNNGTC	1 cut(s)	49
BmeT110I	CYCGRG	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	1078
BmrFI	CCNGG	2 cut(s)	251, 809
BmsI	GCATC	5 cut(s)	517, 835, 857, 871, 983
BpiI	GAAGAC	1 cut(s)	231
Bpu10I	CCTNAGC	1 cut(s)	56
BpuMI	CCSGG	1 cut(s)	251
Bsa29I	ATCGAT	2 cut(s)	483, 865
BsaAI	YACGTR	1 cut(s)	992
BsaHI	GRCGYC	1 cut(s)	348
BsaJI	CCNNGG	2 cut(s)	171, 597
BsaWI	WCCGGW	1 cut(s)	543
BsaXI	ACNNNNNCTCC	2 cut(s)	499, 529
Bsc4I	CCNNNNNNNGG	2 cut(s)	680, 764
Bse118I	RCCGGY	1 cut(s)	543
BseBI	CCWGG	1 cut(s)	809
BseCI	ATCGAT	2 cut(s)	483, 865
BseDI	CCNNGG	2 cut(s)	171, 597
BseLI	CCNNNNNNNGG	2 cut(s)	680, 764
BseMII	CTCAG	6 cut(s)	47, 450, 699, 728, 806, 885
BseRI	GAGGAG	2 cut(s)	108, 111
BseXI	GCAGC	1 cut(s)	478
BseYI	CCCAGC	1 cut(s)	420
Bsh1236I	CGCG	1 cut(s)	649
Bsh1285I	CGRYCG	1 cut(s)	483
BshFI	GGCC	2 cut(s)	170, 1080
BshTI	ACCGGT	1 cut(s)	543
BshVI	ATCGAT	2 cut(s)	483, 865
BsiEI	CGRYCG	1 cut(s)	483
BsiHKCI	CYCGRG	1 cut(s)	185
BsiSI	CCGG	5 cut(s)	6, 202, 251, 544, 886
BslFI	GGGAC	2 cut(s)	403, 1075
BslI	CCNNNNNNNGG	2 cut(s)	680, 764
BsmAI	GTCTC	1 cut(s)	190
BsmFI	GGGAC	2 cut(s)	403, 1075
BsnI	GGCC	2 cut(s)	170, 1080
BsoBI	CYCGRG	1 cut(s)	185
Bsp1407I	TGTACA	1 cut(s)	1038
BspACI	CCGC	6 cut(s)	9, 41, 313, 411, 427, 812
BspANI	GGCC	2 cut(s)	170, 1080
BspCNI	CTCAG	6 cut(s)	48, 449, 700, 727, 805, 886
BspDI	ATCGAT	2 cut(s)	483, 865
BspFNI	CGCG	1 cut(s)	649
BspMAI	CTGCAG	1 cut(s)	1098
BspPI	GGATC	8 cut(s)	216, 317, 421, 697, 730, 827, 877, 1053
BsrFI	RCCGGY	1 cut(s)	543
BsrGI	TGTACA	1 cut(s)	1038
BssAI	RCCGGY	1 cut(s)	543
BssECI	CCNNGG	2 cut(s)	171, 597
BssNI	GRCGYC	1 cut(s)	348
BssT1I	CCWWGG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	809
Bst4CI	ACNGT	1 cut(s)	449
Bst6I	CTCTTC	2 cut(s)	84, 957
BstACI	GRCGYC	1 cut(s)	348
BstAUI	TGTACA	1 cut(s)	1038
BstBAI	YACGTR	1 cut(s)	992
BstC8I	GCNNGC	2 cut(s)	311, 755
BstDEI	CTNAG	7 cut(s)	56, 436, 470, 708, 714, 792, 894
BstDSI	CCRYGG	1 cut(s)	597
BstFNI	CGCG	1 cut(s)	649
BstH2I	RGCGCY	2 cut(s)	261, 427
BstHHI	GCGC	3 cut(s)	31, 260, 426
BstMAI	GTCTC	1 cut(s)	190
BstMCI	CGRYCG	1 cut(s)	483
BstMWI	GCNNNNNNNGC	5 cut(s)	28, 227, 264, 782, 995
BstNI	CCWGG	1 cut(s)	809
BstNSI	RCATGY	3 cut(s)	379, 862, 874
BstSCI	CCNGG	2 cut(s)	249, 807
BstSFI	CTRYAG	3 cut(s)	519, 558, 1094
BstUI	CGCG	1 cut(s)	649
BstV1I	GCAGC	1 cut(s)	478
BstV2I	GAAGAC	1 cut(s)	231
BstX2I	RGATCY	3 cut(s)	208, 322, 832
BstYI	RGATCY	3 cut(s)	208, 322, 832
Bsu15I	ATCGAT	2 cut(s)	483, 865
BsuI	GTATCC	1 cut(s)	916
BsuRI	GGCC	2 cut(s)	170, 1080
BsuTUI	ATCGAT	2 cut(s)	483, 865
BtgI	CCRYGG	1 cut(s)	597
BtsI	GCAGTG	1 cut(s)	242
BtsIMutI	CAGTG	4 cut(s)	42, 242, 454, 578
Cac8I	GCNNGC	2 cut(s)	311, 755
CaiI	CAGNNNCTG	1 cut(s)	55
CfoI	GCGC	3 cut(s)	31, 260, 426
Cfr10I	RCCGGY	1 cut(s)	543
Cfr13I	GGNCC	1 cut(s)	1078
ClaI	ATCGAT	2 cut(s)	483, 865
CseI	GACGC	3 cut(s)	155, 236, 366
Csp6I	GTAC	1 cut(s)	1039
CspAI	ACCGGT	1 cut(s)	543
CspCI	CAANNNNNGTGG	2 cut(s)	1056, 1091
CviAII	CATG	5 cut(s)	376, 859, 871, 952, 1042
CviQI	GTAC	1 cut(s)	1039
DdeI	CTNAG	7 cut(s)	56, 436, 470, 708, 714, 792, 894
DriI	GACNNNNNGTC	1 cut(s)	49
Eam1104I	CTCTTC	2 cut(s)	84, 957
Eam1105I	GACNNNNNGTC	1 cut(s)	49
EarI	CTCTTC	2 cut(s)	84, 957
EciI	GGCGGA	2 cut(s)	56, 827
Eco130I	CCWWGG	1 cut(s)	171
Eco47III	AGCGCT	1 cut(s)	259
Eco57I	CTGAAG	2 cut(s)	243, 602
Eco88I	CYCGRG	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	807
EcoT14I	CCWWGG	1 cut(s)	171
EcoT22I	ATGCAT	2 cut(s)	864, 872
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	5 cut(s)	379, 862, 874, 955, 1045
FaiI	YATR	9 cut(s)	377, 620, 860, 872, 878, 953, 1032, 1043, 1088
FalI	AAGNNNNNCTT	2 cut(s)	742, 774
FaqI	GGGAC	2 cut(s)	403, 1075
FatI	CATG	5 cut(s)	375, 858, 870, 951, 1041
FblI	GTMKAC	1 cut(s)	522
Fnu4HI	GCNGC	4 cut(s)	10, 314, 427, 467
Fsp4HI	GCNGC	4 cut(s)	10, 314, 427, 467
FspBI	CTAG	2 cut(s)	306, 572
GlaI	GCGC	3 cut(s)	30, 259, 425
GluI	GCNGC	4 cut(s)	10, 314, 427, 467
GsaI	CCCAGC	1 cut(s)	424
HaeII	RGCGCY	2 cut(s)	261, 427
HaeIII	GGCC	2 cut(s)	170, 1080
HapII	CCGG	5 cut(s)	6, 202, 251, 544, 886
HgaI	GACGC	3 cut(s)	155, 236, 366
HhaI	GCGC	3 cut(s)	31, 260, 426
Hin1I	GRCGYC	1 cut(s)	348
Hin1II	CATG	5 cut(s)	379, 862, 874, 955, 1045
Hin6I	GCGC	3 cut(s)	29, 258, 424
HinP1I	GCGC	3 cut(s)	29, 258, 424
HindIII	AAGCTT	1 cut(s)	743
HinfI	GANTC	5 cut(s)	198, 339, 512, 586, 704
HpaII	CCGG	5 cut(s)	6, 202, 251, 544, 886
Hpy166II	GTNNAC	2 cut(s)	523, 541
Hpy188III	TCNNGA	3 cut(s)	320, 1109, 1118
Hpy8I	GTNNAC	2 cut(s)	523, 541
Hpy99I	CGWCG	3 cut(s)	71, 149, 360
HpyAV	CCTTC	4 cut(s)	122, 396, 617, 932
HpyCH4III	ACNGT	1 cut(s)	449
HpyCH4IV	ACGT	4 cut(s)	348, 762, 772, 991
HpyCH4V	TGCA	7 cut(s)	267, 336, 679, 776, 862, 870, 1096
HpyF10VI	GCNNNNNNNGC	5 cut(s)	28, 227, 264, 782, 995
HpyF3I	CTNAG	7 cut(s)	56, 436, 470, 708, 714, 792, 894
HpySE526I	ACGT	4 cut(s)	348, 762, 772, 991
Hsp92I	GRCGYC	1 cut(s)	348
Hsp92II	CATG	5 cut(s)	379, 862, 874, 955, 1045
HspAI	GCGC	3 cut(s)	29, 258, 424
LmnI	GCTCC	3 cut(s)	175, 463, 496
Lsp1109I	GCAGC	1 cut(s)	478
LweI	GCATC	5 cut(s)	517, 835, 857, 871, 983
MaeI	CTAG	2 cut(s)	306, 572
MaeII	ACGT	4 cut(s)	348, 762, 772, 991
MaeIII	GTNAC	1 cut(s)	546
MflI	RGATCY	3 cut(s)	208, 322, 832
MluCI	AATT	6 cut(s)	296, 532, 627, 798, 817, 1061
MluI	ACGCGT	1 cut(s)	647
MlyI	GAGTC	1 cut(s)	192
MmeI	TCCRAC	2 cut(s)	168, 745
MnlI	CCTC	8 cut(s)	51, 126, 129, 132, 139, 337, 703, 833
Mph1103I	ATGCAT	2 cut(s)	864, 872
MseI	TTAA	2 cut(s)	299, 641
MspI	CCGG	5 cut(s)	6, 202, 251, 544, 886
MspR9I	CCNGG	2 cut(s)	251, 809
MvaI	CCWGG	1 cut(s)	809
MvnI	CGCG	1 cut(s)	649
MwoI	GCNNNNNNNGC	5 cut(s)	28, 227, 264, 782, 995
NciI	CCSGG	1 cut(s)	251
NlaIII	CATG	5 cut(s)	379, 862, 874, 955, 1045
NmuCI	GTSAC	1 cut(s)	546
NsiI	ATGCAT	2 cut(s)	864, 872
NspI	RCATGY	3 cut(s)	379, 862, 874
PaeR7I	CTCGAG	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	2 cut(s)	141, 376
PfeI	GAWTC	4 cut(s)	339, 512, 586, 704
PfoI	TCCNGGA	1 cut(s)	249
PinAI	ACCGGT	1 cut(s)	543
PkrI	GCNGC	4 cut(s)	11, 315, 428, 468
Ple19I	CGATCG	1 cut(s)	483
PleI	GAGTC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	192
Ppu21I	YACGTR	1 cut(s)	992
Psp6I	CCWGG	1 cut(s)	807
PspFI	CCCAGC	1 cut(s)	420
PspGI	CCWGG	1 cut(s)	807
PspPI	GGNCC	1 cut(s)	1078
PspXI	VCTCGAGB	1 cut(s)	185
PstI	CTGCAG	1 cut(s)	1098
PstNI	CAGNNNCTG	1 cut(s)	55
PsuI	RGATCY	3 cut(s)	208, 322, 832
PvuI	CGATCG	1 cut(s)	483
RsaI	GTAC	1 cut(s)	1040
RsaNI	GTAC	1 cut(s)	1039
SaqAI	TTAA	2 cut(s)	299, 641
SatI	GCNGC	4 cut(s)	10, 314, 427, 467
Sau96I	GGNCC	1 cut(s)	1078
SchI	GAGTC	1 cut(s)	192
ScrFI	CCNGG	2 cut(s)	251, 809
SfaNI	GCATC	5 cut(s)	517, 835, 857, 871, 983
SfcI	CTRYAG	3 cut(s)	519, 558, 1094
Sfr274I	CTCGAG	1 cut(s)	185
SlaI	CTCGAG	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	6 cut(s)	296, 532, 627, 798, 817, 1061
SsiI	CCGC	6 cut(s)	9, 41, 313, 411, 427, 812
SspMI	CTAG	2 cut(s)	306, 572
StyD4I	CCNGG	2 cut(s)	249, 807
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	449
TaiI	ACGT	4 cut(s)	351, 765, 775, 994
TaqI	TCGA	8 cut(s)	135, 186, 282, 370, 479, 483, 865, 1048
TasI	AATT	6 cut(s)	296, 532, 627, 798, 817, 1061
TatI	WGTACW	1 cut(s)	1038
TauI	GCSGC	3 cut(s)	12, 316, 429
TfiI	GAWTC	4 cut(s)	339, 512, 586, 704
Tru1I	TTAA	2 cut(s)	299, 641
Tru9I	TTAA	2 cut(s)	299, 641
TscAI	CASTG	4 cut(s)	42, 242, 454, 585
TseFI	GTSAC	1 cut(s)	546
TseI	GCWGC	1 cut(s)	466
Tsp45I	GTSAC	1 cut(s)	546
TspDTI	ATGAA	2 cut(s)	471, 865
TspRI	CASTG	4 cut(s)	42, 242, 454, 585
XapI	RAATTY	2 cut(s)	798, 817
XceI	RCATGY	3 cut(s)	379, 862, 874
XcmI	CCANNNNNNNNNTGG	1 cut(s)	761
XhoI	CTCGAG	1 cut(s)	185
XmiI	GTMKAC	1 cut(s)	522
XspI	CTAG	2 cut(s)	306, 572
ZraI	GACGTC	1 cut(s)	349
Zsp2I	ATGCAT	2 cut(s)	864, 872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.