Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0011454

Physical Location & Seq

Genomic Coordinates Reverse (-)

91744445 .. 91748387

Gene Structure 3943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00155370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGTCAAGCAGCGAACAAGAGCGATCGGCAACAAACTCAGCGCCGCCGGACGAGTCGCTGCGAATGGCGGTGGCCATCTCTCTTCTCCGATCAAAGCTTCTCCAAAAGCAAAGCCACTCTTCTCCCTCTCAAAACTCCGGCGCTCTCCGATGGAAGCGGAAGGCCAAGGAGCGGAAGCAAGAGCTTCTGAGACTCCGGCAAGATCTGAAAGAAGCCGAAGATGCTTCGCAGTGCGACCTGTTTCCGCAAAGCGCTTCCTGCAAGTGCTATTTCTTCGACAATTTGGGGAAGCTGAGCCCGAATCGGCTGCCGGAAGCTTCTCAGTGCAGATTCAATGACGTCTTGCGACGCCGATTTCTCAGACACGTGCGTTTCAAGGAAAGGAGAAGAAGAACCGGCGGTTCTTCCCAGCGTTACCACTTTTCAGACATGAACAGTGAAGATGAAATGGAGCTGCTTAGAGCCTCAGTTGACTTTCTTGTGGAGCTTTGTGAAACCGAGATAATTACTTATGCATTGTGCTGCTGTCGTTTTTTGAATTGGTCACACCAAGCGGTAGATTTTATTTTAGCTTCATTGAAGAATCTGTTATCAACTACAAAGAATGTAGACCTCATAGAAGGAATTGTTAGCAGCTTAATCACACGTATGATTACAAGGATGTGTTGCCCCTTGCAAGGAAATGCATCAAAACAATCAGACTCTGATGCGCAGTTCTTCATCCAGCACTTGATACGAAAACTTGGTACCGATCCCTACATTGGACAACGTGCACTTTTTGCAGTTTCTCAGAGAGTCTCCGTTCTGGCAGAGAATTTCCTTTTCTCAGATCCATTTGATGATGCTTTTACAAACATGCATCAATGCATGTTCATACTGATCCAGCTTATTGAGTTTTTGGTGTCTGATTACTTATCAGTATGGTCAAAGGATGAAGGTTTTGACACTGTGCTTTTCGAAGAGTGGGTGGCATCAGTTCTTCACGCTCGTAAAGCATTGGAAGTTTTGGAAAGCAGAAATGGGCTATATGTGTTATACATGGATCGAGTCATAGGTGAATTGGCCAAGCATGTGAGCCTTACTATGTCACTGCAGAAGATCAAACGTGAAATTTTAGATAAGCTATTCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000280 GO:0003006 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009553 GO:0009555 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0034641 GO:0035825 GO:0042138 GO:0043170 GO:0043934 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0051026 GO:0051276 GO:0051321 GO:0051704 GO:0061982 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

377

Amino Acids

43.48

Weight (kDa)

8.43

Isoelectric Point (pI)

60.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57880
fragaria_vesca	FvH4_1g00730 FvH4_1g00730
malus_domestica	MD15G1150700.v1.1
prunus_persica	Prupe.7G265000_v2.0.a1
pyrus_communis	pycom15g13500
rosa_chinensis	RchiOBHm_Chr2g0085451
rosa_laevigata	RLG00000015689 RLG00000015690 RLG00000015691
rosa_multiflora	Rmu_sc0004926.1_g000021 Rmu_sc0004926.1_g000026 Rmu_sc0007908.1_g000011
rosa_roxburghii	Rroxscaffold_2G00155370
rosa_rugosa	Rorug01G0460500
rosa_samantha	Rh2AG008700 Rh2BG010000 Rh2CG010500 Rh2DG011000
rosa_wichuraiana	Rw2G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	342
Acc16I	TGCGCA	1 cut(s)	711
Acc65I	GGTACC	1 cut(s)	746
AccB1I	GGYRCC	1 cut(s)	746
AccBSI	CCGCTC	1 cut(s)	172
AccI	GTMKAC	1 cut(s)	609
AciI	CCGC	7 cut(s)	44, 68, 157, 172, 245, 399, 554
AclWI	GGATC	4 cut(s)	746, 824, 874, 1050
AcoI	YGGCCR	2 cut(s)	72, 1062
AcsI	RAATTY	2 cut(s)	814, 1110
AcvI	CACGTG	1 cut(s)	367
AcyI	GRCGYC	2 cut(s)	339, 349
AfaI	GTAC	1 cut(s)	748
AfeI	AGCGCT	1 cut(s)	253
AfiI	CCNNNNNNNGG	3 cut(s)	171, 677, 761
AflIII	ACRYGT	2 cut(s)	364, 644
AgsI	TTSAA	4 cut(s)	334, 376, 538, 580
Alw21I	GWGCWC	1 cut(s)	775
Alw26I	GTCTC	2 cut(s)	184, 802
Alw44I	GTGCAC	1 cut(s)	771
AlwI	GGATC	4 cut(s)	746, 824, 874, 1050
AlwNI	CAGNNNCTG	1 cut(s)	704
Aor51HI	AGCGCT	1 cut(s)	253
AoxI	GGCC	3 cut(s)	72, 162, 1062
ApaLI	GTGCAC	1 cut(s)	771
ApeKI	GCWGC	6 cut(s)	9, 58, 307, 454, 522, 633
ApoI	RAATTY	2 cut(s)	814, 1110
Asp718I	GGTACC	1 cut(s)	746
AspLEI	GCGC	4 cut(s)	43, 143, 254, 712
AsuHPI	GGTGA	1 cut(s)	1067
AsuII	TTCGAA	1 cut(s)	957
BaeGI	GKGCMC	1 cut(s)	775
BalI	TGGCCA	2 cut(s)	74, 1064
BanI	GGYRCC	1 cut(s)	746
BanII	GRGCYC	1 cut(s)	299
BbrPI	CACGTG	1 cut(s)	367
Bbv12I	GWGCWC	1 cut(s)	775
BbvI	GCAGC	6 cut(s)	21, 45, 294, 441, 509, 645
BccI	CCATC	2 cut(s)	83, 144
BcgI	CGANNNNNNTGC	2 cut(s)	289, 323
BcoDI	GTCTC	2 cut(s)	184, 802
BfmI	CTRYAG	1 cut(s)	1091
BfoI	RGCGCY	3 cut(s)	44, 144, 255
BglII	AGATCT	1 cut(s)	202
BisI	GCNGC	7 cut(s)	10, 44, 59, 308, 455, 523, 634
BlpI	GCTNAGC	1 cut(s)	293
BlsI	GCNGC	7 cut(s)	11, 45, 60, 309, 456, 524, 635
BmiI	GGNNCC	1 cut(s)	748
BmsI	GCATC	6 cut(s)	211, 695, 697, 832, 868, 980
Bpu1102I	GCTNAGC	1 cut(s)	293
Bpu14I	TTCGAA	1 cut(s)	957
BsaAI	YACGTR	2 cut(s)	367, 647
BsaHI	GRCGYC	2 cut(s)	339, 349
BsaJI	CCNNGG	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	3 cut(s)	171, 677, 761
Bse118I	RCCGGY	1 cut(s)	395
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	3 cut(s)	666, 720, 937
BseLI	CCNNNNNNNGG	3 cut(s)	171, 677, 761
BseMII	CTCAG	8 cut(s)	51, 179, 284, 335, 373, 480, 803, 840
BseSI	GKGCMC	1 cut(s)	775
BseXI	GCAGC	6 cut(s)	21, 45, 294, 441, 509, 645
BseYI	CCCAGC	1 cut(s)	408
BsgI	GTGCAG	1 cut(s)	346
Bsh1285I	CGRYCG	1 cut(s)	26
BshFI	GGCC	3 cut(s)	74, 164, 1064
BshNI	GGYRCC	1 cut(s)	746
BsiEI	CGRYCG	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	775
BsiSI	CCGG	5 cut(s)	47, 138, 196, 311, 396
BslI	CCNNNNNNNGG	3 cut(s)	171, 677, 761
BsmAI	GTCTC	2 cut(s)	184, 802
BsnI	GGCC	3 cut(s)	74, 164, 1064
Bsp119I	TTCGAA	1 cut(s)	957
Bsp1286I	GDGCHC	2 cut(s)	299, 775
Bsp143I	GATC	8 cut(s)	23, 89, 202, 751, 829, 879, 1042, 1098
Bsp1720I	GCTNAGC	1 cut(s)	293
BspACI	CCGC	7 cut(s)	44, 68, 157, 172, 245, 399, 554
BspANI	GGCC	3 cut(s)	74, 164, 1064
BspCNI	CTCAG	8 cut(s)	50, 180, 285, 334, 372, 479, 802, 839
BspLI	GGNNCC	1 cut(s)	748
BspMAI	CTGCAG	1 cut(s)	1095
BspPI	GGATC	4 cut(s)	746, 824, 874, 1050
BspT104I	TTCGAA	1 cut(s)	957
BspT107I	GGYRCC	1 cut(s)	746
BsrBI	CCGCTC	1 cut(s)	172
BsrFI	RCCGGY	1 cut(s)	395
BssAI	RCCGGY	1 cut(s)	395
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	8 cut(s)	23, 89, 202, 751, 829, 879, 1042, 1098
BssNI	GRCGYC	2 cut(s)	339, 349
BssT1I	CCWWGG	1 cut(s)	165
Bst4CI	ACNGT	2 cut(s)	437, 949
Bst6I	CTCTTC	3 cut(s)	87, 124, 954
BstACI	GRCGYC	2 cut(s)	339, 349
BstAPI	GCANNNNNTGC	1 cut(s)	779
BstBAI	YACGTR	2 cut(s)	367, 647
BstBI	TTCGAA	1 cut(s)	957
BstDEI	CTNAG	9 cut(s)	37, 188, 293, 321, 359, 458, 466, 789, 826
BstF5I	GGATG	3 cut(s)	666, 720, 937
BstH2I	RGCGCY	3 cut(s)	44, 144, 255
BstHHI	GCGC	4 cut(s)	43, 143, 254, 712
BstKTI	GATC	8 cut(s)	26, 92, 205, 754, 832, 882, 1045, 1101
BstMAI	GTCTC	2 cut(s)	184, 802
BstMBI	GATC	8 cut(s)	23, 89, 202, 751, 829, 879, 1042, 1098
BstMCI	CGRYCG	1 cut(s)	26
BstMWI	GCNNNNNNNGC	4 cut(s)	221, 258, 779, 992
BstNSI	RCATGY	3 cut(s)	859, 871, 1073
BstSFI	CTRYAG	1 cut(s)	1091
BstSLI	GKGCMC	1 cut(s)	775
BstV1I	GCAGC	6 cut(s)	21, 45, 294, 441, 509, 645
BstX2I	RGATCY	2 cut(s)	202, 829
BstYI	RGATCY	2 cut(s)	202, 829
BsuRI	GGCC	3 cut(s)	74, 164, 1064
BtsCI	GGATG	3 cut(s)	666, 720, 937
BtsI	GCAGTG	2 cut(s)	236, 1088
BtsIMutI	CAGTG	6 cut(s)	236, 329, 442, 945, 1088, 1129
CaiI	CAGNNNCTG	1 cut(s)	704
CfoI	GCGC	4 cut(s)	43, 143, 254, 712
Cfr10I	RCCGGY	1 cut(s)	395
CseI	GACGC	1 cut(s)	357
Csp6I	GTAC	1 cut(s)	747
CviAII	CATG	5 cut(s)	430, 856, 868, 1039, 1070
CviQI	GTAC	1 cut(s)	747
DdeI	CTNAG	9 cut(s)	37, 188, 293, 321, 359, 458, 466, 789, 826
DpnI	GATC	8 cut(s)	25, 91, 204, 753, 831, 881, 1044, 1100
DpnII	GATC	8 cut(s)	23, 89, 202, 751, 829, 879, 1042, 1098
EaeI	YGGCCR	2 cut(s)	72, 1062
Eam1104I	CTCTTC	3 cut(s)	87, 124, 954
EarI	CTCTTC	3 cut(s)	87, 124, 954
Eco130I	CCWWGG	1 cut(s)	165
Eco24I	GRGCYC	1 cut(s)	299
Eco47III	AGCGCT	1 cut(s)	253
Eco72I	CACGTG	1 cut(s)	367
EcoT14I	CCWWGG	1 cut(s)	165
EcoT22I	ATGCAT	4 cut(s)	517, 688, 861, 869
EcoT38I	GRGCYC	1 cut(s)	299
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	5 cut(s)	433, 859, 871, 1042, 1073
FalI	AAGNNNNNCTT	2 cut(s)	103, 135
FatI	CATG	5 cut(s)	429, 855, 867, 1038, 1069
FblI	GTMKAC	1 cut(s)	609
Fnu4HI	GCNGC	7 cut(s)	10, 44, 59, 308, 455, 523, 634
FokI	GGATG	3 cut(s)	673, 707, 944
FriOI	GRGCYC	1 cut(s)	299
Fsp4HI	GCNGC	7 cut(s)	10, 44, 59, 308, 455, 523, 634
FspI	TGCGCA	1 cut(s)	711
GlaI	GCGC	4 cut(s)	42, 142, 253, 711
GluI	GCNGC	7 cut(s)	10, 44, 59, 308, 455, 523, 634
GsaI	CCCAGC	1 cut(s)	412
HaeII	RGCGCY	3 cut(s)	44, 144, 255
HaeIII	GGCC	3 cut(s)	74, 164, 1064
HapII	CCGG	5 cut(s)	47, 138, 196, 311, 396
HgaI	GACGC	1 cut(s)	357
HhaI	GCGC	4 cut(s)	43, 143, 254, 712
Hin1I	GRCGYC	2 cut(s)	339, 349
Hin1II	CATG	5 cut(s)	433, 859, 871, 1042, 1073
Hin6I	GCGC	4 cut(s)	41, 141, 252, 710
HinP1I	GCGC	4 cut(s)	41, 141, 252, 710
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HindIII	AAGCTT	2 cut(s)	95, 315
HinfI	GANTC	8 cut(s)	53, 192, 301, 330, 583, 701, 795, 1047
HpaII	CCGG	5 cut(s)	47, 138, 196, 311, 396
HphI	GGTGA	1 cut(s)	1067
Hpy166II	GTNNAC	3 cut(s)	472, 610, 773
Hpy8I	GTNNAC	3 cut(s)	472, 610, 773
Hpy99I	CGWCG	1 cut(s)	351
HpyAV	CCTTC	3 cut(s)	154, 614, 929
HpyCH4III	ACNGT	2 cut(s)	437, 949
HpyCH4IV	ACGT	5 cut(s)	339, 366, 646, 769, 1105
HpyF10VI	GCNNNNNNNGC	4 cut(s)	221, 258, 779, 992
HpyF3I	CTNAG	9 cut(s)	37, 188, 293, 321, 359, 458, 466, 789, 826
HpySE526I	ACGT	5 cut(s)	339, 366, 646, 769, 1105
Hsp92I	GRCGYC	2 cut(s)	339, 349
Hsp92II	CATG	5 cut(s)	433, 859, 871, 1042, 1073
HspAI	GCGC	4 cut(s)	41, 141, 252, 710
KpnI	GGTACC	1 cut(s)	750
Kzo9I	GATC	8 cut(s)	23, 89, 202, 751, 829, 879, 1042, 1098
LmnI	GCTCC	3 cut(s)	169, 451, 484
Lsp1109I	GCAGC	6 cut(s)	21, 45, 294, 441, 509, 645
LweI	GCATC	6 cut(s)	211, 695, 697, 832, 868, 980
MaeII	ACGT	5 cut(s)	339, 366, 646, 769, 1105
MaeIII	GTNAC	3 cut(s)	413, 543, 1086
MalI	GATC	8 cut(s)	25, 91, 204, 753, 831, 881, 1044, 1100
MbiI	CCGCTC	1 cut(s)	172
MboI	GATC	8 cut(s)	23, 89, 202, 751, 829, 879, 1042, 1098
MflI	RGATCY	2 cut(s)	202, 829
MhlI	GDGCHC	2 cut(s)	299, 775
MlsI	TGGCCA	2 cut(s)	74, 1064
MluCI	AATT	7 cut(s)	280, 504, 538, 624, 814, 1058, 1110
MluNI	TGGCCA	2 cut(s)	74, 1064
MlyI	GAGTC	5 cut(s)	62, 186, 695, 804, 1056
MnlI	CCTC	3 cut(s)	136, 475, 623
Mox20I	TGGCCA	2 cut(s)	74, 1064
Mph1103I	ATGCAT	4 cut(s)	517, 688, 861, 869
MscI	TGGCCA	2 cut(s)	74, 1064
MseI	TTAA	1 cut(s)	638
MslI	CAYNNNNRTG	1 cut(s)	647
Msp20I	TGGCCA	2 cut(s)	74, 1064
MspI	CCGG	5 cut(s)	47, 138, 196, 311, 396
MwoI	GCNNNNNNNGC	4 cut(s)	221, 258, 779, 992
NdeII	GATC	8 cut(s)	23, 89, 202, 751, 829, 879, 1042, 1098
NlaIII	CATG	5 cut(s)	433, 859, 871, 1042, 1073
NlaIV	GGNNCC	1 cut(s)	748
NmuCI	GTSAC	2 cut(s)	543, 1086
NsbI	TGCGCA	1 cut(s)	711
NsiI	ATGCAT	4 cut(s)	517, 688, 861, 869
NspI	RCATGY	3 cut(s)	859, 871, 1073
NspV	TTCGAA	1 cut(s)	957
PfeI	GAWTC	3 cut(s)	301, 330, 583
PkrI	GCNGC	7 cut(s)	11, 45, 60, 309, 456, 524, 635
Ple19I	CGATCG	1 cut(s)	26
PleI	GAGTC	5 cut(s)	61, 186, 695, 803, 1055
PmaCI	CACGTG	1 cut(s)	367
PmlI	CACGTG	1 cut(s)	367
PpsI	GAGTC	5 cut(s)	61, 186, 695, 803, 1055
Ppu21I	YACGTR	2 cut(s)	367, 647
PspCI	CACGTG	1 cut(s)	367
PspFI	CCCAGC	1 cut(s)	408
PspN4I	GGNNCC	1 cut(s)	748
PstI	CTGCAG	1 cut(s)	1095
PstNI	CAGNNNCTG	1 cut(s)	704
PsuI	RGATCY	2 cut(s)	202, 829
PvuI	CGATCG	1 cut(s)	26
RsaI	GTAC	1 cut(s)	748
RsaNI	GTAC	1 cut(s)	747
RseI	CAYNNNNRTG	1 cut(s)	647
SaqAI	TTAA	1 cut(s)	638
SatI	GCNGC	7 cut(s)	10, 44, 59, 308, 455, 523, 634
Sau3AI	GATC	8 cut(s)	23, 89, 202, 751, 829, 879, 1042, 1098
SchI	GAGTC	5 cut(s)	62, 186, 695, 804, 1056
SduI	GDGCHC	2 cut(s)	299, 775
SfaNI	GCATC	6 cut(s)	211, 695, 697, 832, 868, 980
SfcI	CTRYAG	1 cut(s)	1091
SfuI	TTCGAA	1 cut(s)	957
SmiMI	CAYNNNNRTG	1 cut(s)	647
Sse9I	AATT	7 cut(s)	280, 504, 538, 624, 814, 1058, 1110
SsiI	CCGC	7 cut(s)	44, 68, 157, 172, 245, 399, 554
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	2 cut(s)	437, 949
TaiI	ACGT	5 cut(s)	342, 369, 649, 772, 1108
TaqI	TCGA	3 cut(s)	276, 957, 1045
TasI	AATT	7 cut(s)	280, 504, 538, 624, 814, 1058, 1110
TauI	GCSGC	1 cut(s)	46
TfiI	GAWTC	3 cut(s)	301, 330, 583
Tru1I	TTAA	1 cut(s)	638
Tru9I	TTAA	1 cut(s)	638
TscAI	CASTG	5 cut(s)	236, 329, 442, 952, 1095
TseFI	GTSAC	2 cut(s)	543, 1086
TseI	GCWGC	6 cut(s)	9, 58, 307, 454, 522, 633
Tsp45I	GTSAC	2 cut(s)	543, 1086
TspDTI	ATGAA	6 cut(s)	446, 459, 564, 709, 862, 948
TspGWI	ACGGA	1 cut(s)	790
TspRI	CASTG	5 cut(s)	236, 329, 442, 952, 1095
VneI	GTGCAC	1 cut(s)	771
XapI	RAATTY	2 cut(s)	814, 1110
XceI	RCATGY	3 cut(s)	859, 871, 1073
XmiI	GTMKAC	1 cut(s)	609
ZraI	GACGTC	1 cut(s)	340
Zsp2I	ATGCAT	4 cut(s)	517, 688, 861, 869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.