Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0011454

Physical Location & Seq

Genomic Coordinates Forward (+)

376614 .. 380062

Gene Structure 3449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g00730.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGTCAAACTCAGCGCCGCCGGACGAGTCGGTGAGAATCGCCACCGCGATCTCTCTTCTCCGATCAAAGCTTCTCCAAAAGCACACTTCTCCTTCTCAAAACCCCGACGCTCTCCGATGGAAGCGAAAGGCCAAGGAGCGGAAGCAAGAGCTCTTGAGACTCCGGCAAGATCTGAAAGAAGCCGAAGATTCTTCGCAGTGCGACTTGTTTCCGCAAAGCGCATCCTGCAAGTGCTATTTCTTTGATAATTTGGGGAAACTGAGCCCTAATCGGCTGCCGGAGGCTTCTCAGTGCAGATTCAATGACGTTTTGCGACGCCGTTTTCTCAGACACGTGCGTTTCAAGGAAAGGAGAAGGAGAACCACCGGTTCTTATTCGCAGCGGTACCGATTCTCAGACATGAACAGTGAAGATGAAATGGAGCTGCTTAGAGCCTCGGTCGACTTTCTAGTGGAGCTTTGCGAAACCAGTTCTGCGGTGGAGGAGGCTAGCTTTTTGAATTGGTCACACCAAGCTGTAGATTTTATTTTAGCTTCATTGAAGAATCTGTTATCAACTGCAAAGAATATAGACCTGATAGAAGGAATTGTCAGCAGCTTAATCACACGTATGATTACAAGGATGTGTTGCCCCTTGCAAGGAAATGCAAAACAATCCAACTCTGACGGGCAGTTCTTCGTCCAGCACTTGATCCGAAAACTTGGTACTGATCCTTACGTTGGCCAACGTGCACTTTTTGCAGTTTCTCAGAGAGTCTCCGTTCTGGCAGAGAATTTCCTTTTCTCAGATCCATTTGATGATGCTTTTACAAACATGCATCAATGCATGTTCATACTGATCCAGCTTATTGAGTTTTTGGTGTCTGATTACTTATCAGTATGGTCAAAGGATGAAGGTTTTGACATTGTGCTCTTCGAGGAGTGGGTGGCATCAGTTCTTCACGCTCGTAAAGCATTGGAACTTTTGGAAAGCAGAAATGGGCTATATGCGTTATACATGGATCGAGTCATAGGTGAACTGGCCAAACAAGTGAGCCTTACCATGTCACTGCAGAAGATCAAACGTGAAATACTAGATAAGCTATTCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000280 GO:0003006 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009553 GO:0009555 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0034641 GO:0035825 GO:0042138 GO:0043170 GO:0043934 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0051026 GO:0051276 GO:0051321 GO:0051704 GO:0061982 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

364

Amino Acids

41.89

Weight (kDa)

8.35

Isoelectric Point (pI)

57.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57880
fragaria_vesca	FvH4_1g00730 FvH4_1g00730
malus_domestica	MD15G1150700.v1.1
prunus_persica	Prupe.7G265000_v2.0.a1
pyrus_communis	pycom15g13500
rosa_chinensis	RchiOBHm_Chr2g0085451
rosa_laevigata	RLG00000015689 RLG00000015690 RLG00000015691
rosa_multiflora	Rmu_sc0004926.1_g000021 Rmu_sc0004926.1_g000026 Rmu_sc0007908.1_g000011
rosa_roxburghii	Rroxscaffold_2G00155370
rosa_rugosa	Rorug01G0460500
rosa_samantha	Rh2AG008700 Rh2BG010000 Rh2CG010500 Rh2DG011000
rosa_wichuraiana	Rw2G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	384
AccB1I	GGYRCC	1 cut(s)	384
AccBSI	CCGCTC	1 cut(s)	139
AccI	GTMKAC	1 cut(s)	441
AccII	CGCG	1 cut(s)	47
AciI	CCGC	6 cut(s)	17, 45, 139, 212, 382, 476
AclWI	GGATC	5 cut(s)	685, 704, 782, 832, 1008
AcoI	YGGCCR	2 cut(s)	721, 1020
AcsI	RAATTY	1 cut(s)	772
AcvI	CACGTG	1 cut(s)	334
AcyI	GRCGYC	1 cut(s)	316
AfaI	GTAC	2 cut(s)	386, 706
AfiI	CCNNNNNNNGG	3 cut(s)	138, 638, 719
AflIII	ACRYGT	2 cut(s)	331, 605
AgeI	ACCGGT	1 cut(s)	365
AgsI	TTSAA	4 cut(s)	301, 343, 499, 541
Alw21I	GWGCWC	3 cut(s)	153, 733, 912
Alw26I	GTCTC	2 cut(s)	151, 760
Alw44I	GTGCAC	1 cut(s)	729
AlwI	GGATC	5 cut(s)	685, 704, 782, 832, 1008
AoxI	GGCC	3 cut(s)	129, 721, 1020
ApaLI	GTGCAC	1 cut(s)	729
ApeKI	GCWGC	4 cut(s)	274, 379, 424, 594
ApoI	RAATTY	1 cut(s)	772
AsiGI	ACCGGT	1 cut(s)	365
Asp718I	GGTACC	1 cut(s)	384
AspLEI	GCGC	2 cut(s)	16, 221
AsuHPI	GGTGA	2 cut(s)	43, 1025
AsuNHI	GCTAGC	1 cut(s)	488
BaeGI	GKGCMC	1 cut(s)	733
BalI	TGGCCA	2 cut(s)	723, 1022
BanI	GGYRCC	1 cut(s)	384
BanII	GRGCYC	2 cut(s)	153, 266
BbrPI	CACGTG	1 cut(s)	334
Bbv12I	GWGCWC	3 cut(s)	153, 733, 912
BbvI	GCAGC	4 cut(s)	261, 391, 411, 606
BccI	CCATC	1 cut(s)	111
BceAI	ACGGC	1 cut(s)	303
BcoDI	GTCTC	2 cut(s)	151, 760
BfaI	CTAG	3 cut(s)	449, 489, 1073
BfmI	CTRYAG	2 cut(s)	516, 1049
BfoI	RGCGCY	1 cut(s)	17
BglII	AGATCT	1 cut(s)	169
BisI	GCNGC	5 cut(s)	17, 275, 380, 425, 595
BlsI	GCNGC	5 cut(s)	18, 276, 381, 426, 596
BmiI	GGNNCC	1 cut(s)	386
BmsI	GCATC	4 cut(s)	230, 790, 826, 938
BmtI	GCTAGC	1 cut(s)	492
BpuEI	CTTGAG	1 cut(s)	175
BsaAI	YACGTR	2 cut(s)	334, 608
BsaHI	GRCGYC	1 cut(s)	316
BsaJI	CCNNGG	2 cut(s)	132, 435
BsaWI	WCCGGW	1 cut(s)	365
Bsc4I	CCNNNNNNNGG	3 cut(s)	138, 638, 719
Bse118I	RCCGGY	1 cut(s)	365
Bse1I	ACTGG	2 cut(s)	468, 1023
BseDI	CCNNGG	2 cut(s)	132, 435
BseGI	GGATG	3 cut(s)	221, 627, 895
BseLI	CCNNNNNNNGG	3 cut(s)	138, 638, 719
BseMII	CTCAG	7 cut(s)	24, 251, 302, 340, 408, 761, 798
BseNI	ACTGG	2 cut(s)	468, 1023
BseRI	GAGGAG	2 cut(s)	497, 932
BseSI	GKGCMC	1 cut(s)	733
BseXI	GCAGC	4 cut(s)	261, 391, 411, 606
BsgI	GTGCAG	1 cut(s)	313
Bsh1236I	CGCG	1 cut(s)	47
Bsh1285I	CGRYCG	1 cut(s)	441
BshFI	GGCC	3 cut(s)	131, 723, 1022
BshNI	GGYRCC	1 cut(s)	384
BshTI	ACCGGT	1 cut(s)	365
BsiEI	CGRYCG	1 cut(s)	441
BsiHKAI	GWGCWC	3 cut(s)	153, 733, 912
BsiSI	CCGG	4 cut(s)	20, 163, 278, 366
BslI	CCNNNNNNNGG	3 cut(s)	138, 638, 719
BsmAI	GTCTC	2 cut(s)	151, 760
BsnI	GGCC	3 cut(s)	131, 723, 1022
Bsp1286I	GDGCHC	4 cut(s)	153, 266, 733, 912
Bsp143I	GATC	9 cut(s)	48, 62, 169, 690, 709, 787, 837, 1000, 1056
BspACI	CCGC	6 cut(s)	17, 45, 139, 212, 382, 476
BspANI	GGCC	3 cut(s)	131, 723, 1022
BspCNI	CTCAG	7 cut(s)	23, 252, 301, 339, 407, 760, 797
BspFNI	CGCG	1 cut(s)	47
BspLI	GGNNCC	1 cut(s)	386
BspMAI	CTGCAG	1 cut(s)	1053
BspOI	GCTAGC	1 cut(s)	492
BspPI	GGATC	5 cut(s)	685, 704, 782, 832, 1008
BspQI	GCTCTTC	1 cut(s)	917
BspT107I	GGYRCC	1 cut(s)	384
BsrBI	CCGCTC	1 cut(s)	139
BsrFI	RCCGGY	1 cut(s)	365
BsrI	ACTGG	2 cut(s)	468, 1023
BssAI	RCCGGY	1 cut(s)	365
BssECI	CCNNGG	2 cut(s)	132, 435
BssMI	GATC	9 cut(s)	48, 62, 169, 690, 709, 787, 837, 1000, 1056
BssNI	GRCGYC	1 cut(s)	316
BssT1I	CCWWGG	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	407
Bst6I	CTCTTC	2 cut(s)	60, 917
BstACI	GRCGYC	1 cut(s)	316
BstAPI	GCANNNNNTGC	1 cut(s)	737
BstBAI	YACGTR	2 cut(s)	334, 608
BstC8I	GCNNGC	1 cut(s)	490
BstDEI	CTNAG	8 cut(s)	10, 260, 288, 326, 394, 428, 747, 784
BstF5I	GGATG	3 cut(s)	221, 627, 895
BstFNI	CGCG	1 cut(s)	47
BstH2I	RGCGCY	1 cut(s)	17
BstHHI	GCGC	2 cut(s)	16, 221
BstKTI	GATC	9 cut(s)	51, 65, 172, 693, 712, 790, 840, 1003, 1059
BstMAI	GTCTC	2 cut(s)	151, 760
BstMBI	GATC	9 cut(s)	48, 62, 169, 690, 709, 787, 837, 1000, 1056
BstMCI	CGRYCG	1 cut(s)	441
BstMWI	GCNNNNNNNGC	3 cut(s)	225, 737, 950
BstNSI	RCATGY	2 cut(s)	817, 829
BstSFI	CTRYAG	2 cut(s)	516, 1049
BstSLI	GKGCMC	1 cut(s)	733
BstUI	CGCG	1 cut(s)	47
BstV1I	GCAGC	4 cut(s)	261, 391, 411, 606
BstX2I	RGATCY	2 cut(s)	169, 787
BstYI	RGATCY	2 cut(s)	169, 787
BsuRI	GGCC	3 cut(s)	131, 723, 1022
BtsCI	GGATG	3 cut(s)	221, 627, 895
BtsI	GCAGTG	2 cut(s)	203, 1046
BtsIMutI	CAGTG	4 cut(s)	203, 296, 412, 1046
Cac8I	GCNNGC	1 cut(s)	490
CfoI	GCGC	2 cut(s)	16, 221
Cfr10I	RCCGGY	1 cut(s)	365
CseI	GACGC	2 cut(s)	116, 324
Csp6I	GTAC	2 cut(s)	385, 705
CspAI	ACCGGT	1 cut(s)	365
CviAII	CATG	5 cut(s)	400, 814, 826, 997, 1042
CviQI	GTAC	2 cut(s)	385, 705
DdeI	CTNAG	8 cut(s)	10, 260, 288, 326, 394, 428, 747, 784
DpnI	GATC	9 cut(s)	50, 64, 171, 692, 711, 789, 839, 1002, 1058
DpnII	GATC	9 cut(s)	48, 62, 169, 690, 709, 787, 837, 1000, 1056
EaeI	YGGCCR	2 cut(s)	721, 1020
Eam1104I	CTCTTC	2 cut(s)	60, 917
EarI	CTCTTC	2 cut(s)	60, 917
Ecl136II	GAGCTC	1 cut(s)	151
Eco130I	CCWWGG	1 cut(s)	132
Eco24I	GRGCYC	2 cut(s)	153, 266
Eco53kI	GAGCTC	1 cut(s)	151
Eco72I	CACGTG	1 cut(s)	334
EcoICRI	GAGCTC	1 cut(s)	151
EcoT14I	CCWWGG	1 cut(s)	132
EcoT22I	ATGCAT	2 cut(s)	819, 827
EcoT38I	GRGCYC	2 cut(s)	153, 266
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	5 cut(s)	403, 817, 829, 1000, 1045
FalI	AAGNNNNNCTT	2 cut(s)	1020, 1052
FatI	CATG	5 cut(s)	399, 813, 825, 996, 1041
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	5 cut(s)	17, 275, 380, 425, 595
FokI	GGATG	3 cut(s)	208, 634, 902
FriOI	GRGCYC	2 cut(s)	153, 266
Fsp4HI	GCNGC	5 cut(s)	17, 275, 380, 425, 595
FspBI	CTAG	3 cut(s)	449, 489, 1073
GlaI	GCGC	2 cut(s)	15, 220
GluI	GCNGC	5 cut(s)	17, 275, 380, 425, 595
HaeII	RGCGCY	1 cut(s)	17
HaeIII	GGCC	3 cut(s)	131, 723, 1022
HapII	CCGG	4 cut(s)	20, 163, 278, 366
HgaI	GACGC	2 cut(s)	116, 324
HhaI	GCGC	2 cut(s)	16, 221
Hin1I	GRCGYC	1 cut(s)	316
Hin1II	CATG	5 cut(s)	403, 817, 829, 1000, 1045
Hin6I	GCGC	2 cut(s)	14, 219
HinP1I	GCGC	2 cut(s)	14, 219
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	9 cut(s)	26, 36, 159, 188, 297, 390, 544, 753, 1005
HpaII	CCGG	4 cut(s)	20, 163, 278, 366
HphI	GGTGA	2 cut(s)	43, 1025
Hpy166II	GTNNAC	3 cut(s)	442, 731, 1016
Hpy188III	TCNNGA	1 cut(s)	154
Hpy8I	GTNNAC	3 cut(s)	442, 731, 1016
Hpy99I	CGWCG	2 cut(s)	110, 318
HpyAV	CCTTC	4 cut(s)	102, 348, 575, 887
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4IV	ACGT	6 cut(s)	306, 333, 607, 717, 727, 1063
HpyF10VI	GCNNNNNNNGC	3 cut(s)	225, 737, 950
HpyF3I	CTNAG	8 cut(s)	10, 260, 288, 326, 394, 428, 747, 784
HpySE526I	ACGT	6 cut(s)	306, 333, 607, 717, 727, 1063
Hsp92I	GRCGYC	1 cut(s)	316
Hsp92II	CATG	5 cut(s)	403, 817, 829, 1000, 1045
HspAI	GCGC	2 cut(s)	14, 219
KpnI	GGTACC	1 cut(s)	388
Kzo9I	GATC	9 cut(s)	48, 62, 169, 690, 709, 787, 837, 1000, 1056
LguI	GCTCTTC	1 cut(s)	917
LmnI	GCTCC	3 cut(s)	136, 421, 454
Lsp1109I	GCAGC	4 cut(s)	261, 391, 411, 606
LweI	GCATC	4 cut(s)	230, 790, 826, 938
MaeI	CTAG	3 cut(s)	449, 489, 1073
MaeII	ACGT	6 cut(s)	306, 333, 607, 717, 727, 1063
MaeIII	GTNAC	2 cut(s)	504, 1044
MalI	GATC	9 cut(s)	50, 64, 171, 692, 711, 789, 839, 1002, 1058
MbiI	CCGCTC	1 cut(s)	139
MboI	GATC	9 cut(s)	48, 62, 169, 690, 709, 787, 837, 1000, 1056
MboII	GAAGA	9 cut(s)	47, 183, 197, 422, 553, 667, 904, 929, 1066
MflI	RGATCY	2 cut(s)	169, 787
MhlI	GDGCHC	4 cut(s)	153, 266, 733, 912
MlsI	TGGCCA	2 cut(s)	723, 1022
MluCI	AATT	4 cut(s)	247, 499, 585, 772
MluNI	TGGCCA	2 cut(s)	723, 1022
MlyI	GAGTC	4 cut(s)	35, 153, 762, 1014
MmeI	TCCRAC	1 cut(s)	681
MnlI	CCTC	5 cut(s)	274, 445, 475, 478, 910
Mox20I	TGGCCA	2 cut(s)	723, 1022
Mph1103I	ATGCAT	2 cut(s)	819, 827
MscI	TGGCCA	2 cut(s)	723, 1022
MseI	TTAA	1 cut(s)	599
MslI	CAYNNNNRTG	1 cut(s)	608
Msp20I	TGGCCA	2 cut(s)	723, 1022
MspA1I	CMGCKG	1 cut(s)	382
MspI	CCGG	4 cut(s)	20, 163, 278, 366
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	3 cut(s)	225, 737, 950
NdeII	GATC	9 cut(s)	48, 62, 169, 690, 709, 787, 837, 1000, 1056
NheI	GCTAGC	1 cut(s)	488
NlaIII	CATG	5 cut(s)	403, 817, 829, 1000, 1045
NlaIV	GGNNCC	1 cut(s)	386
NmuCI	GTSAC	2 cut(s)	504, 1044
NsiI	ATGCAT	2 cut(s)	819, 827
NspI	RCATGY	2 cut(s)	817, 829
PciSI	GCTCTTC	1 cut(s)	917
PfeI	GAWTC	5 cut(s)	36, 188, 297, 390, 544
PinAI	ACCGGT	1 cut(s)	365
PkrI	GCNGC	5 cut(s)	18, 276, 381, 426, 596
PleI	GAGTC	4 cut(s)	34, 153, 761, 1013
PmaCI	CACGTG	1 cut(s)	334
PmlI	CACGTG	1 cut(s)	334
PpsI	GAGTC	4 cut(s)	34, 153, 761, 1013
Ppu21I	YACGTR	2 cut(s)	334, 608
Psp124BI	GAGCTC	1 cut(s)	153
PspCI	CACGTG	1 cut(s)	334
PspN4I	GGNNCC	1 cut(s)	386
PstI	CTGCAG	1 cut(s)	1053
PsuI	RGATCY	2 cut(s)	169, 787
RsaI	GTAC	2 cut(s)	386, 706
RsaNI	GTAC	2 cut(s)	385, 705
RseI	CAYNNNNRTG	1 cut(s)	608
SacI	GAGCTC	1 cut(s)	153
SalI	GTCGAC	1 cut(s)	440
SapI	GCTCTTC	1 cut(s)	917
SaqAI	TTAA	1 cut(s)	599
SatI	GCNGC	5 cut(s)	17, 275, 380, 425, 595
Sau3AI	GATC	9 cut(s)	48, 62, 169, 690, 709, 787, 837, 1000, 1056
SchI	GAGTC	4 cut(s)	35, 153, 762, 1014
SduI	GDGCHC	4 cut(s)	153, 266, 733, 912
SfaNI	GCATC	4 cut(s)	230, 790, 826, 938
SfcI	CTRYAG	2 cut(s)	516, 1049
SmiMI	CAYNNNNRTG	1 cut(s)	608
SmlI	CTYRAG	1 cut(s)	154
SmoI	CTYRAG	1 cut(s)	154
Sse9I	AATT	4 cut(s)	247, 499, 585, 772
SsiI	CCGC	6 cut(s)	17, 45, 139, 212, 382, 476
SspMI	CTAG	3 cut(s)	449, 489, 1073
SstI	GAGCTC	1 cut(s)	153
StyI	CCWWGG	1 cut(s)	132
TaaI	ACNGT	1 cut(s)	407
TaiI	ACGT	6 cut(s)	309, 336, 610, 720, 730, 1066
TaqI	TCGA	4 cut(s)	441, 915, 1003, 1086
TaqII	GACCGA	1 cut(s)	427
TasI	AATT	4 cut(s)	247, 499, 585, 772
TauI	GCSGC	1 cut(s)	19
TfiI	GAWTC	5 cut(s)	36, 188, 297, 390, 544
Tru1I	TTAA	1 cut(s)	599
Tru9I	TTAA	1 cut(s)	599
TscAI	CASTG	4 cut(s)	203, 296, 412, 1053
TseFI	GTSAC	2 cut(s)	504, 1044
TseI	GCWGC	4 cut(s)	274, 379, 424, 594
Tsp45I	GTSAC	2 cut(s)	504, 1044
TspDTI	ATGAA	5 cut(s)	416, 429, 525, 820, 906
TspGWI	ACGGA	1 cut(s)	748
TspRI	CASTG	4 cut(s)	203, 296, 412, 1053
VneI	GTGCAC	1 cut(s)	729
XapI	RAATTY	1 cut(s)	772
XceI	RCATGY	2 cut(s)	817, 829
XcmI	CCANNNNNNNNNTGG	1 cut(s)	475
XmiI	GTMKAC	1 cut(s)	441
XspI	CTAG	3 cut(s)	449, 489, 1073
Zsp2I	ATGCAT	2 cut(s)	819, 827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.