Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0011454

Physical Location & Seq

Genomic Coordinates Forward (+)

733709 .. 735742

Gene Structure 2034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG010000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGTCAAGCAGCGAACAAGAGCGATCGGCAACAAACTCAGCGCCGCCGGACGAGTCGCTGCGAATGGCGGTGGCCATCTCACTTCTCCGATCAAAGCTTCTCCAAAAGCAAAGCCACTCTTCTCCTTCTCAAAACTCCGACGCTCTCCGATGGAAGCGGAAGGCCAAGGAGCGGAAGCAAGAGCTTCTGAGACTCCGGCAAGATCTGAAAGAAGCCGAAGATGCTTCGCAGTGCGACCTGTTTCCGCAAAGCGCTTCCTGCAAGTGCTATTTCTTCGACAATTTGGGGAAGCTGAGCCCGAATCGGCTGCCGGAAGCTTCTCAGTGCAGATTCAATGACGTCTTGCGACGCCGATTTCTCAGACACGTGCGTTTCAAGGAAAGGAGAAGAAGAACCGGCGGTTCTTCCCAGCGTTACCACTTTTCAGACATGAACAGTGGAGATGAAATGGAGCTGCTTAGGGCCTCAGTTGACTTTCTTGTGGAGCTTTGTGAAACCGGTTCTCCGAATCTGTTATCAACTGCAAAGAACGTAGACCTCATAGAAGGAATTGTCAGCAGCTTAATCACACGTATGATTACAAGGATGTGTTGCCCCTTGCAAGGAAATGCATCAAAACAATCAGACTCTGATGCGCAGTTCTTCGTCCAGCACTTGATACGAAAACTTGGTACCGATCCCTACATTGGACAACGTGCACTTTTTGCAGTTTCTCAGAGAGTCTCCATTCTGGCAGAGAGTTTCCTTTTCTCAGATCCATTTGATGATGCTTTTACAAACATGCATCAATGCATGTTCATACTGATCCAGCTTATTGAGTTTTTGGTGTCTGATTACTTTTTGGGCCATGCCTTTTCTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000280 GO:0003006 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009553 GO:0009555 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0034641 GO:0035825 GO:0042138 GO:0043170 GO:0043934 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0051026 GO:0051276 GO:0051321 GO:0051704 GO:0061982 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

287

Amino Acids

32.78

Weight (kDa)

8.73

Isoelectric Point (pI)

71.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57880
fragaria_vesca	FvH4_1g00730 FvH4_1g00730
malus_domestica	MD15G1150700.v1.1
prunus_persica	Prupe.7G265000_v2.0.a1
pyrus_communis	pycom15g13500
rosa_chinensis	RchiOBHm_Chr2g0085451
rosa_laevigata	RLG00000015689 RLG00000015690 RLG00000015691
rosa_multiflora	Rmu_sc0004926.1_g000021 Rmu_sc0004926.1_g000026 Rmu_sc0007908.1_g000011
rosa_roxburghii	Rroxscaffold_2G00155370
rosa_rugosa	Rorug01G0460500
rosa_samantha	Rh2AG008700 Rh2BG010000 Rh2CG010500 Rh2DG011000
rosa_wichuraiana	Rw2G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	342
Acc16I	TGCGCA	1 cut(s)	636
Acc65I	GGTACC	1 cut(s)	671
AccB1I	GGYRCC	1 cut(s)	671
AccBSI	CCGCTC	1 cut(s)	172
AccI	GTMKAC	1 cut(s)	534
AciI	CCGC	6 cut(s)	44, 68, 157, 172, 245, 399
AclWI	GGATC	3 cut(s)	671, 749, 799
AcoI	YGGCCR	1 cut(s)	72
AcvI	CACGTG	1 cut(s)	367
AcyI	GRCGYC	2 cut(s)	339, 349
AfaI	GTAC	1 cut(s)	673
AfeI	AGCGCT	1 cut(s)	253
AfiI	CCNNNNNNNGG	3 cut(s)	171, 602, 686
AflIII	ACRYGT	2 cut(s)	364, 569
AgeI	ACCGGT	1 cut(s)	497
AgsI	TTSAA	2 cut(s)	334, 376
AluBI	AGCT	8 cut(s)	97, 184, 292, 317, 454, 487, 561, 811
AluI	AGCT	8 cut(s)	97, 184, 292, 317, 454, 487, 561, 811
Alw21I	GWGCWC	1 cut(s)	700
Alw26I	GTCTC	2 cut(s)	184, 727
Alw44I	GTGCAC	1 cut(s)	696
AlwI	GGATC	3 cut(s)	671, 749, 799
AlwNI	CAGNNNCTG	1 cut(s)	629
Aor51HI	AGCGCT	1 cut(s)	253
AoxI	GGCC	4 cut(s)	72, 162, 462, 844
ApaLI	GTGCAC	1 cut(s)	696
ApeKI	GCWGC	5 cut(s)	9, 58, 307, 454, 558
AsiGI	ACCGGT	1 cut(s)	497
Asp718I	GGTACC	1 cut(s)	671
AspLEI	GCGC	3 cut(s)	43, 254, 637
AspS9I	GGNCC	2 cut(s)	462, 844
BaeGI	GKGCMC	1 cut(s)	700
BalI	TGGCCA	1 cut(s)	74
BanI	GGYRCC	1 cut(s)	671
BanII	GRGCYC	1 cut(s)	299
BbrPI	CACGTG	1 cut(s)	367
Bbv12I	GWGCWC	1 cut(s)	700
BbvI	GCAGC	5 cut(s)	21, 45, 294, 441, 570
BccI	CCATC	2 cut(s)	83, 144
BcgI	CGANNNNNNTGC	2 cut(s)	289, 323
BcoDI	GTCTC	2 cut(s)	184, 727
BfoI	RGCGCY	2 cut(s)	44, 255
BglII	AGATCT	1 cut(s)	202
BisI	GCNGC	6 cut(s)	10, 44, 59, 308, 455, 559
BlpI	GCTNAGC	1 cut(s)	293
BlsI	GCNGC	6 cut(s)	11, 45, 60, 309, 456, 560
BmgT120I	GGNCC	2 cut(s)	462, 844
BmiI	GGNNCC	1 cut(s)	673
BmsI	GCATC	5 cut(s)	211, 620, 622, 757, 793
Bpu10I	CCTNAGC	1 cut(s)	458
Bpu1102I	GCTNAGC	1 cut(s)	293
BsaAI	YACGTR	2 cut(s)	367, 572
BsaHI	GRCGYC	2 cut(s)	339, 349
BsaJI	CCNNGG	1 cut(s)	165
BsaWI	WCCGGW	1 cut(s)	497
BsaXI	ACNNNNNCTCC	2 cut(s)	487, 517
Bsc4I	CCNNNNNNNGG	3 cut(s)	171, 602, 686
Bse118I	RCCGGY	2 cut(s)	395, 497
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	1 cut(s)	591
BseLI	CCNNNNNNNGG	3 cut(s)	171, 602, 686
BseMII	CTCAG	8 cut(s)	51, 179, 284, 335, 373, 480, 728, 765
BseSI	GKGCMC	1 cut(s)	700
BseXI	GCAGC	5 cut(s)	21, 45, 294, 441, 570
BseYI	CCCAGC	1 cut(s)	408
BsgI	GTGCAG	1 cut(s)	346
Bsh1285I	CGRYCG	1 cut(s)	26
BshFI	GGCC	4 cut(s)	74, 164, 464, 846
BshNI	GGYRCC	1 cut(s)	671
BshTI	ACCGGT	1 cut(s)	497
BsiEI	CGRYCG	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	700
BsiSI	CCGG	5 cut(s)	47, 196, 311, 396, 498
BslI	CCNNNNNNNGG	3 cut(s)	171, 602, 686
BsmAI	GTCTC	2 cut(s)	184, 727
BsnI	GGCC	4 cut(s)	74, 164, 464, 846
Bsp1286I	GDGCHC	2 cut(s)	299, 700
Bsp143I	GATC	6 cut(s)	23, 89, 202, 676, 754, 804
Bsp1720I	GCTNAGC	1 cut(s)	293
BspACI	CCGC	6 cut(s)	44, 68, 157, 172, 245, 399
BspANI	GGCC	4 cut(s)	74, 164, 464, 846
BspCNI	CTCAG	8 cut(s)	50, 180, 285, 334, 372, 479, 727, 764
BspLI	GGNNCC	1 cut(s)	673
BspPI	GGATC	3 cut(s)	671, 749, 799
BspT107I	GGYRCC	1 cut(s)	671
BsrBI	CCGCTC	1 cut(s)	172
BsrFI	RCCGGY	2 cut(s)	395, 497
BssAI	RCCGGY	2 cut(s)	395, 497
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	6 cut(s)	23, 89, 202, 676, 754, 804
BssNI	GRCGYC	2 cut(s)	339, 349
BssT1I	CCWWGG	1 cut(s)	165
Bst4CI	ACNGT	1 cut(s)	437
Bst6I	CTCTTC	1 cut(s)	124
BstACI	GRCGYC	2 cut(s)	339, 349
BstAPI	GCANNNNNTGC	1 cut(s)	704
BstBAI	YACGTR	2 cut(s)	367, 572
BstDEI	CTNAG	9 cut(s)	37, 188, 293, 321, 359, 458, 466, 714, 751
BstF5I	GGATG	1 cut(s)	591
BstH2I	RGCGCY	2 cut(s)	44, 255
BstHHI	GCGC	3 cut(s)	43, 254, 637
BstKTI	GATC	6 cut(s)	26, 92, 205, 679, 757, 807
BstMAI	GTCTC	2 cut(s)	184, 727
BstMBI	GATC	6 cut(s)	23, 89, 202, 676, 754, 804
BstMCI	CGRYCG	1 cut(s)	26
BstMWI	GCNNNNNNNGC	3 cut(s)	221, 258, 704
BstNSI	RCATGY	2 cut(s)	784, 796
BstSLI	GKGCMC	1 cut(s)	700
BstV1I	GCAGC	5 cut(s)	21, 45, 294, 441, 570
BstX2I	RGATCY	2 cut(s)	202, 754
BstYI	RGATCY	2 cut(s)	202, 754
BsuRI	GGCC	4 cut(s)	74, 164, 464, 846
BtsCI	GGATG	1 cut(s)	591
BtsI	GCAGTG	1 cut(s)	236
BtsIMutI	CAGTG	3 cut(s)	236, 329, 442
CaiI	CAGNNNCTG	1 cut(s)	629
CfoI	GCGC	3 cut(s)	43, 254, 637
Cfr10I	RCCGGY	2 cut(s)	395, 497
Cfr13I	GGNCC	2 cut(s)	462, 844
CseI	GACGC	2 cut(s)	149, 357
Csp6I	GTAC	1 cut(s)	672
CspAI	ACCGGT	1 cut(s)	497
CviAII	CATG	4 cut(s)	430, 781, 793, 848
CviQI	GTAC	1 cut(s)	672
DdeI	CTNAG	9 cut(s)	37, 188, 293, 321, 359, 458, 466, 714, 751
DpnI	GATC	6 cut(s)	25, 91, 204, 678, 756, 806
DpnII	GATC	6 cut(s)	23, 89, 202, 676, 754, 804
EaeI	YGGCCR	1 cut(s)	72
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	165
Eco24I	GRGCYC	1 cut(s)	299
Eco47III	AGCGCT	1 cut(s)	253
Eco72I	CACGTG	1 cut(s)	367
EcoO109I	RGGNCCY	1 cut(s)	462
EcoT14I	CCWWGG	1 cut(s)	165
EcoT22I	ATGCAT	3 cut(s)	613, 786, 794
EcoT38I	GRGCYC	1 cut(s)	299
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	4 cut(s)	433, 784, 796, 851
FaiI	YATR	7 cut(s)	431, 542, 575, 782, 794, 800, 849
FalI	AAGNNNNNCTT	2 cut(s)	103, 135
FatI	CATG	4 cut(s)	429, 780, 792, 847
FblI	GTMKAC	1 cut(s)	534
Fnu4HI	GCNGC	6 cut(s)	10, 44, 59, 308, 455, 559
FokI	GGATG	1 cut(s)	598
FriOI	GRGCYC	1 cut(s)	299
Fsp4HI	GCNGC	6 cut(s)	10, 44, 59, 308, 455, 559
FspI	TGCGCA	1 cut(s)	636
GlaI	GCGC	3 cut(s)	42, 253, 636
GluI	GCNGC	6 cut(s)	10, 44, 59, 308, 455, 559
GsaI	CCCAGC	1 cut(s)	412
HaeII	RGCGCY	2 cut(s)	44, 255
HaeIII	GGCC	4 cut(s)	74, 164, 464, 846
HapII	CCGG	5 cut(s)	47, 196, 311, 396, 498
HgaI	GACGC	2 cut(s)	149, 357
HhaI	GCGC	3 cut(s)	43, 254, 637
Hin1I	GRCGYC	2 cut(s)	339, 349
Hin1II	CATG	4 cut(s)	433, 784, 796, 851
Hin6I	GCGC	3 cut(s)	41, 252, 635
HinP1I	GCGC	3 cut(s)	41, 252, 635
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HindIII	AAGCTT	2 cut(s)	95, 315
HinfI	GANTC	7 cut(s)	53, 192, 301, 330, 508, 626, 720
HpaII	CCGG	5 cut(s)	47, 196, 311, 396, 498
Hpy166II	GTNNAC	3 cut(s)	472, 535, 698
Hpy8I	GTNNAC	3 cut(s)	472, 535, 698
Hpy99I	CGWCG	2 cut(s)	143, 351
HpyAV	CCTTC	3 cut(s)	135, 154, 539
HpyCH4III	ACNGT	1 cut(s)	437
HpyCH4IV	ACGT	5 cut(s)	339, 366, 531, 571, 694
HpyCH4V	TGCA	9 cut(s)	261, 327, 524, 601, 611, 698, 707, 784, 792
HpyF10VI	GCNNNNNNNGC	3 cut(s)	221, 258, 704
HpyF3I	CTNAG	9 cut(s)	37, 188, 293, 321, 359, 458, 466, 714, 751
HpySE526I	ACGT	5 cut(s)	339, 366, 531, 571, 694
Hsp92I	GRCGYC	2 cut(s)	339, 349
Hsp92II	CATG	4 cut(s)	433, 784, 796, 851
HspAI	GCGC	3 cut(s)	41, 252, 635
KpnI	GGTACC	1 cut(s)	675
Kzo9I	GATC	6 cut(s)	23, 89, 202, 676, 754, 804
LmnI	GCTCC	3 cut(s)	169, 451, 484
Lsp1109I	GCAGC	5 cut(s)	21, 45, 294, 441, 570
LweI	GCATC	5 cut(s)	211, 620, 622, 757, 793
MaeII	ACGT	5 cut(s)	339, 366, 531, 571, 694
MaeIII	GTNAC	1 cut(s)	413
MalI	GATC	6 cut(s)	25, 91, 204, 678, 756, 806
MbiI	CCGCTC	1 cut(s)	172
MboI	GATC	6 cut(s)	23, 89, 202, 676, 754, 804
MboII	GAAGA	7 cut(s)	111, 230, 265, 396, 399, 402, 634
MflI	RGATCY	2 cut(s)	202, 754
MhlI	GDGCHC	2 cut(s)	299, 700
MlsI	TGGCCA	1 cut(s)	74
MluCI	AATT	2 cut(s)	280, 549
MluNI	TGGCCA	1 cut(s)	74
MlyI	GAGTC	4 cut(s)	62, 186, 620, 729
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	2 cut(s)	475, 548
Mox20I	TGGCCA	1 cut(s)	74
Mph1103I	ATGCAT	3 cut(s)	613, 786, 794
MscI	TGGCCA	1 cut(s)	74
MseI	TTAA	1 cut(s)	563
MslI	CAYNNNNRTG	1 cut(s)	572
Msp20I	TGGCCA	1 cut(s)	74
MspI	CCGG	5 cut(s)	47, 196, 311, 396, 498
MwoI	GCNNNNNNNGC	3 cut(s)	221, 258, 704
NdeII	GATC	6 cut(s)	23, 89, 202, 676, 754, 804
NlaIII	CATG	4 cut(s)	433, 784, 796, 851
NlaIV	GGNNCC	1 cut(s)	673
NsbI	TGCGCA	1 cut(s)	636
NsiI	ATGCAT	3 cut(s)	613, 786, 794
NspI	RCATGY	2 cut(s)	784, 796
PfeI	GAWTC	3 cut(s)	301, 330, 508
PinAI	ACCGGT	1 cut(s)	497
PkrI	GCNGC	6 cut(s)	11, 45, 60, 309, 456, 560
Ple19I	CGATCG	1 cut(s)	26
PleI	GAGTC	4 cut(s)	61, 186, 620, 728
PmaCI	CACGTG	1 cut(s)	367
PmlI	CACGTG	1 cut(s)	367
PpsI	GAGTC	4 cut(s)	61, 186, 620, 728
Ppu21I	YACGTR	2 cut(s)	367, 572
PspCI	CACGTG	1 cut(s)	367
PspFI	CCCAGC	1 cut(s)	408
PspN4I	GGNNCC	1 cut(s)	673
PspPI	GGNCC	2 cut(s)	462, 844
PstNI	CAGNNNCTG	1 cut(s)	629
PsuI	RGATCY	2 cut(s)	202, 754
PvuI	CGATCG	1 cut(s)	26
RsaI	GTAC	1 cut(s)	673
RsaNI	GTAC	1 cut(s)	672
RseI	CAYNNNNRTG	1 cut(s)	572
SaqAI	TTAA	1 cut(s)	563
SatI	GCNGC	6 cut(s)	10, 44, 59, 308, 455, 559
Sau3AI	GATC	6 cut(s)	23, 89, 202, 676, 754, 804
Sau96I	GGNCC	2 cut(s)	462, 844
SchI	GAGTC	4 cut(s)	62, 186, 620, 729
SduI	GDGCHC	2 cut(s)	299, 700
SfaNI	GCATC	5 cut(s)	211, 620, 622, 757, 793
SmiMI	CAYNNNNRTG	1 cut(s)	572
Sse9I	AATT	2 cut(s)	280, 549
SsiI	CCGC	6 cut(s)	44, 68, 157, 172, 245, 399
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	437
TaiI	ACGT	5 cut(s)	342, 369, 534, 574, 697
TaqI	TCGA	1 cut(s)	276
TasI	AATT	2 cut(s)	280, 549
TauI	GCSGC	1 cut(s)	46
TfiI	GAWTC	3 cut(s)	301, 330, 508
Tru1I	TTAA	1 cut(s)	563
Tru9I	TTAA	1 cut(s)	563
TscAI	CASTG	3 cut(s)	236, 329, 442
TseI	GCWGC	5 cut(s)	9, 58, 307, 454, 558
TspDTI	ATGAA	3 cut(s)	446, 459, 787
TspRI	CASTG	3 cut(s)	236, 329, 442
VneI	GTGCAC	1 cut(s)	696
XceI	RCATGY	2 cut(s)	784, 796
XmiI	GTMKAC	1 cut(s)	534
ZraI	GACGTC	1 cut(s)	340
Zsp2I	ATGCAT	3 cut(s)	613, 786, 794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.