Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004926.1

Orthogroup ID

OG0011454

Physical Location & Seq

Genomic Coordinates Forward (+)

119243 .. 121685

Gene Structure 2443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004926.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

atggcggtggccatctctcttctccgatcaaagcttctccaaaagcaaagccactcttctccttctcaaaactccgacgctctccgatggaagcggaaggccaaggagcgtaagcaagagcttctgagactccggcaagatctgaaagaagccgaagatgcttcgcagtgcgacctgtttccgcaaagcgcttcctgcaagtgctatttcttcaacaatttggggaagctgagcccgaatcggctgccggaagcttctcagtgcagattcaatgacgtcttgcgacgccgatttctcagacacgtgcgtttcaaggaacggagaagaagaaccggcggttcttcccagcggtaccacttttcagatatgaacagtgaagatgaaatggagctgcttagggcctcagttgactttcttgtggagctttgtgaaaccagttctccggtggaggaggctagttttttgaattggtcacaccaagcggtagattttattttagcttcattgaagaatctgttatcaactgcaaagaatgtagacctcatagaaggaattgtcagcagcttaatcacgcgtatgattacaaggatgtgttgccccttgcaaggaaatgcttcaaaacaatcagactctgatgcgcagttcttcgtccagcacttgatccgaaaacttggaactgatccctatgttggacaacgtgcactttttgcagtttctcagagagtctccgttctggcagagaatttccttttctcagatccgtttgatgatgcttttacaaacatgcatcaatgcatgttcatactgatccagcttattgagtttttagtgtctgattacctatcagtatggtcaaaggatgaaggttttgacactgtgctcttcgaagagtgggtggcatcagttcttcacgctcgtaaagcattggaagttttggaaagcagaaatgggctatatgcgttatacatggatcgagtcataggtgaattggccaagcatgtgagccttactatgtcactgcagaagatcaaacgcgaaagtttagataagctattccagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000280 GO:0003006 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009553 GO:0009555 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0034641 GO:0035825 GO:0042138 GO:0043170 GO:0043934 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0051026 GO:0051276 GO:0051321 GO:0051704 GO:0061982 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

353

Amino Acids

40.67

Weight (kDa)

8.56

Isoelectric Point (pI)

58.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57880
fragaria_vesca	FvH4_1g00730 FvH4_1g00730
malus_domestica	MD15G1150700.v1.1
prunus_persica	Prupe.7G265000_v2.0.a1
pyrus_communis	pycom15g13500
rosa_chinensis	RchiOBHm_Chr2g0085451
rosa_laevigata	RLG00000015689 RLG00000015690 RLG00000015691
rosa_multiflora	Rmu_sc0004926.1_g000021 Rmu_sc0004926.1_g000026 Rmu_sc0007908.1_g000011
rosa_roxburghii	Rroxscaffold_2G00155370
rosa_rugosa	Rorug01G0460500
rosa_samantha	Rh2AG008700 Rh2BG010000 Rh2CG010500 Rh2DG011000
rosa_wichuraiana	Rw2G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	279
Acc16I	TGCGCA	1 cut(s)	639
Acc65I	GGTACC	1 cut(s)	351
AccB1I	GGYRCC	1 cut(s)	351
AccI	GTMKAC	1 cut(s)	537
AccII	CGCG	2 cut(s)	574, 1035
AciI	CCGC	6 cut(s)	5, 94, 182, 336, 349, 482
AclWI	GGATC	5 cut(s)	655, 674, 752, 802, 978
AcoI	YGGCCR	2 cut(s)	9, 990
AcsI	RAATTY	1 cut(s)	742
AcvI	CACGTG	1 cut(s)	304
AcyI	GRCGYC	2 cut(s)	276, 286
AfaI	GTAC	1 cut(s)	353
AfeI	AGCGCT	1 cut(s)	190
AfiI	CCNNNNNNNGG	2 cut(s)	605, 689
AflIII	ACRYGT	2 cut(s)	301, 572
AgsI	TTSAA	6 cut(s)	214, 271, 313, 466, 508, 618
Alw21I	GWGCWC	2 cut(s)	703, 882
Alw26I	GTCTC	2 cut(s)	121, 730
Alw44I	GTGCAC	1 cut(s)	699
AlwI	GGATC	5 cut(s)	655, 674, 752, 802, 978
AlwNI	CAGNNNCTG	1 cut(s)	632
Aor51HI	AGCGCT	1 cut(s)	190
AoxI	GGCC	4 cut(s)	9, 99, 399, 990
ApaLI	GTGCAC	1 cut(s)	699
ApeKI	GCWGC	3 cut(s)	244, 391, 561
ApoI	RAATTY	1 cut(s)	742
Asp700I	GAANNNNTTC	1 cut(s)	613
Asp718I	GGTACC	1 cut(s)	351
AspLEI	GCGC	2 cut(s)	191, 640
AspS9I	GGNCC	1 cut(s)	399
AsuHPI	GGTGA	1 cut(s)	995
AsuII	TTCGAA	1 cut(s)	885
BaeGI	GKGCMC	1 cut(s)	703
BalI	TGGCCA	2 cut(s)	11, 992
BanI	GGYRCC	1 cut(s)	351
BanII	GRGCYC	1 cut(s)	236
BbrPI	CACGTG	1 cut(s)	304
Bbv12I	GWGCWC	2 cut(s)	703, 882
BbvI	GCAGC	3 cut(s)	231, 378, 573
BccI	CCATC	2 cut(s)	20, 81
BcgI	CGANNNNNNTGC	2 cut(s)	226, 260
BcoDI	GTCTC	2 cut(s)	121, 730
BfaI	CTAG	1 cut(s)	456
BfmI	CTRYAG	1 cut(s)	1019
BfoI	RGCGCY	1 cut(s)	192
BglII	AGATCT	1 cut(s)	139
BisI	GCNGC	3 cut(s)	245, 392, 562
BlpI	GCTNAGC	1 cut(s)	230
BlsI	GCNGC	3 cut(s)	246, 393, 563
BmgT120I	GGNCC	1 cut(s)	399
BmiI	GGNNCC	1 cut(s)	353
BmsI	GCATC	5 cut(s)	148, 625, 760, 796, 908
Bpu10I	CCTNAGC	1 cut(s)	395
Bpu1102I	GCTNAGC	1 cut(s)	230
Bpu14I	TTCGAA	1 cut(s)	885
BsaAI	YACGTR	1 cut(s)	304
BsaHI	GRCGYC	2 cut(s)	276, 286
BsaJI	CCNNGG	1 cut(s)	102
BsaWI	WCCGGW	1 cut(s)	442
BsaXI	ACNNNNNCTCC	2 cut(s)	424, 454
Bsc4I	CCNNNNNNNGG	2 cut(s)	605, 689
Bse118I	RCCGGY	1 cut(s)	332
Bse1I	ACTGG	2 cut(s)	435, 1057
BseDI	CCNNGG	1 cut(s)	102
BseGI	GGATG	2 cut(s)	594, 865
BseLI	CCNNNNNNNGG	2 cut(s)	605, 689
BseMII	CTCAG	7 cut(s)	116, 221, 272, 310, 417, 731, 768
BseNI	ACTGG	2 cut(s)	435, 1057
BseRI	GAGGAG	1 cut(s)	464
BseSI	GKGCMC	1 cut(s)	703
BseXI	GCAGC	3 cut(s)	231, 378, 573
BseYI	CCCAGC	1 cut(s)	345
BsgI	GTGCAG	1 cut(s)	283
Bsh1236I	CGCG	2 cut(s)	574, 1035
BshFI	GGCC	4 cut(s)	11, 101, 401, 992
BshNI	GGYRCC	1 cut(s)	351
BsiHKAI	GWGCWC	2 cut(s)	703, 882
BsiSI	CCGG	4 cut(s)	133, 248, 333, 443
BslI	CCNNNNNNNGG	2 cut(s)	605, 689
BsmAI	GTCTC	2 cut(s)	121, 730
BsnI	GGCC	4 cut(s)	11, 101, 401, 992
Bsp119I	TTCGAA	1 cut(s)	885
Bsp1286I	GDGCHC	3 cut(s)	236, 703, 882
Bsp143I	GATC	8 cut(s)	26, 139, 660, 679, 757, 807, 970, 1026
Bsp1720I	GCTNAGC	1 cut(s)	230
BspACI	CCGC	6 cut(s)	5, 94, 182, 336, 349, 482
BspANI	GGCC	4 cut(s)	11, 101, 401, 992
BspCNI	CTCAG	7 cut(s)	117, 222, 271, 309, 416, 730, 767
BspFNI	CGCG	2 cut(s)	574, 1035
BspLI	GGNNCC	1 cut(s)	353
BspMAI	CTGCAG	1 cut(s)	1023
BspPI	GGATC	5 cut(s)	655, 674, 752, 802, 978
BspQI	GCTCTTC	1 cut(s)	887
BspT104I	TTCGAA	1 cut(s)	885
BspT107I	GGYRCC	1 cut(s)	351
BsrFI	RCCGGY	1 cut(s)	332
BsrI	ACTGG	2 cut(s)	435, 1057
BssAI	RCCGGY	1 cut(s)	332
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	8 cut(s)	26, 139, 660, 679, 757, 807, 970, 1026
BssNI	GRCGYC	2 cut(s)	276, 286
BssT1I	CCWWGG	1 cut(s)	102
Bst4CI	ACNGT	2 cut(s)	374, 877
Bst6I	CTCTTC	4 cut(s)	24, 61, 882, 887
BstACI	GRCGYC	2 cut(s)	276, 286
BstAPI	GCANNNNNTGC	1 cut(s)	707
BstBAI	YACGTR	1 cut(s)	304
BstBI	TTCGAA	1 cut(s)	885
BstDEI	CTNAG	8 cut(s)	125, 230, 258, 296, 395, 403, 717, 754
BstF5I	GGATG	2 cut(s)	594, 865
BstFNI	CGCG	2 cut(s)	574, 1035
BstH2I	RGCGCY	1 cut(s)	192
BstHHI	GCGC	2 cut(s)	191, 640
BstKTI	GATC	8 cut(s)	29, 142, 663, 682, 760, 810, 973, 1029
BstMAI	GTCTC	2 cut(s)	121, 730
BstMBI	GATC	8 cut(s)	26, 139, 660, 679, 757, 807, 970, 1026
BstMWI	GCNNNNNNNGC	4 cut(s)	158, 195, 707, 920
BstNSI	RCATGY	3 cut(s)	787, 799, 1001
BstSFI	CTRYAG	1 cut(s)	1019
BstSLI	GKGCMC	1 cut(s)	703
BstUI	CGCG	2 cut(s)	574, 1035
BstV1I	GCAGC	3 cut(s)	231, 378, 573
BstX2I	RGATCY	2 cut(s)	139, 757
BstYI	RGATCY	2 cut(s)	139, 757
BsuRI	GGCC	4 cut(s)	11, 101, 401, 992
BtsCI	GGATG	2 cut(s)	594, 865
BtsI	GCAGTG	2 cut(s)	173, 1016
BtsIMutI	CAGTG	5 cut(s)	173, 266, 379, 873, 1016
CaiI	CAGNNNCTG	1 cut(s)	632
CfoI	GCGC	2 cut(s)	191, 640
Cfr10I	RCCGGY	1 cut(s)	332
Cfr13I	GGNCC	1 cut(s)	399
CseI	GACGC	2 cut(s)	86, 294
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	4 cut(s)	784, 796, 967, 998
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	8 cut(s)	125, 230, 258, 296, 395, 403, 717, 754
DpnI	GATC	8 cut(s)	28, 141, 662, 681, 759, 809, 972, 1028
DpnII	GATC	8 cut(s)	26, 139, 660, 679, 757, 807, 970, 1026
EaeI	YGGCCR	2 cut(s)	9, 990
Eam1104I	CTCTTC	4 cut(s)	24, 61, 882, 887
EarI	CTCTTC	4 cut(s)	24, 61, 882, 887
Eco130I	CCWWGG	1 cut(s)	102
Eco24I	GRGCYC	1 cut(s)	236
Eco47III	AGCGCT	1 cut(s)	190
Eco72I	CACGTG	1 cut(s)	304
EcoO109I	RGGNCCY	1 cut(s)	399
EcoT14I	CCWWGG	1 cut(s)	102
EcoT22I	ATGCAT	2 cut(s)	789, 797
EcoT38I	GRGCYC	1 cut(s)	236
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	4 cut(s)	787, 799, 970, 1001
FalI	AAGNNNNNCTT	2 cut(s)	40, 72
FatI	CATG	4 cut(s)	783, 795, 966, 997
FblI	GTMKAC	1 cut(s)	537
Fnu4HI	GCNGC	3 cut(s)	245, 392, 562
FokI	GGATG	2 cut(s)	601, 872
FriOI	GRGCYC	1 cut(s)	236
Fsp4HI	GCNGC	3 cut(s)	245, 392, 562
FspBI	CTAG	1 cut(s)	456
FspI	TGCGCA	1 cut(s)	639
GlaI	GCGC	2 cut(s)	190, 639
GluI	GCNGC	3 cut(s)	245, 392, 562
GsaI	CCCAGC	1 cut(s)	349
HaeII	RGCGCY	1 cut(s)	192
HaeIII	GGCC	4 cut(s)	11, 101, 401, 992
HapII	CCGG	4 cut(s)	133, 248, 333, 443
HgaI	GACGC	2 cut(s)	86, 294
HhaI	GCGC	2 cut(s)	191, 640
Hin1I	GRCGYC	2 cut(s)	276, 286
Hin1II	CATG	4 cut(s)	787, 799, 970, 1001
Hin6I	GCGC	2 cut(s)	189, 638
HinP1I	GCGC	2 cut(s)	189, 638
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HindIII	AAGCTT	2 cut(s)	32, 252
HinfI	GANTC	7 cut(s)	129, 238, 267, 511, 629, 723, 975
HpaII	CCGG	4 cut(s)	133, 248, 333, 443
HphI	GGTGA	1 cut(s)	995
Hpy166II	GTNNAC	3 cut(s)	409, 538, 701
Hpy8I	GTNNAC	3 cut(s)	409, 538, 701
Hpy99I	CGWCG	2 cut(s)	80, 288
HpyAV	CCTTC	4 cut(s)	72, 91, 542, 857
HpyCH4III	ACNGT	2 cut(s)	374, 877
HpyCH4IV	ACGT	3 cut(s)	276, 303, 697
HpyCH4V	TGCA	9 cut(s)	198, 264, 527, 604, 701, 710, 787, 795, 1021
HpyF10VI	GCNNNNNNNGC	4 cut(s)	158, 195, 707, 920
HpyF3I	CTNAG	8 cut(s)	125, 230, 258, 296, 395, 403, 717, 754
HpySE526I	ACGT	3 cut(s)	276, 303, 697
Hsp92I	GRCGYC	2 cut(s)	276, 286
Hsp92II	CATG	4 cut(s)	787, 799, 970, 1001
HspAI	GCGC	2 cut(s)	189, 638
KpnI	GGTACC	1 cut(s)	355
Kzo9I	GATC	8 cut(s)	26, 139, 660, 679, 757, 807, 970, 1026
LguI	GCTCTTC	1 cut(s)	887
LmnI	GCTCC	3 cut(s)	106, 388, 421
Lsp1109I	GCAGC	3 cut(s)	231, 378, 573
LweI	GCATC	5 cut(s)	148, 625, 760, 796, 908
MaeI	CTAG	1 cut(s)	456
MaeII	ACGT	3 cut(s)	276, 303, 697
MaeIII	GTNAC	2 cut(s)	471, 1014
MalI	GATC	8 cut(s)	28, 141, 662, 681, 759, 809, 972, 1028
MboI	GATC	8 cut(s)	26, 139, 660, 679, 757, 807, 970, 1026
MflI	RGATCY	2 cut(s)	139, 757
MhlI	GDGCHC	3 cut(s)	236, 703, 882
MlsI	TGGCCA	2 cut(s)	11, 992
MluCI	AATT	5 cut(s)	217, 466, 552, 742, 986
MluI	ACGCGT	1 cut(s)	572
MluNI	TGGCCA	2 cut(s)	11, 992
MlyI	GAGTC	4 cut(s)	123, 623, 732, 984
MmeI	TCCRAC	2 cut(s)	99, 670
MnlI	CCTC	4 cut(s)	412, 442, 445, 551
Mox20I	TGGCCA	2 cut(s)	11, 992
Mph1103I	ATGCAT	2 cut(s)	789, 797
MroXI	GAANNNNTTC	1 cut(s)	613
MscI	TGGCCA	2 cut(s)	11, 992
MseI	TTAA	1 cut(s)	566
MslI	CAYNNNNRTG	1 cut(s)	575
Msp20I	TGGCCA	2 cut(s)	11, 992
MspA1I	CMGCKG	1 cut(s)	349
MspI	CCGG	4 cut(s)	133, 248, 333, 443
MvnI	CGCG	2 cut(s)	574, 1035
MwoI	GCNNNNNNNGC	4 cut(s)	158, 195, 707, 920
NdeII	GATC	8 cut(s)	26, 139, 660, 679, 757, 807, 970, 1026
NlaIII	CATG	4 cut(s)	787, 799, 970, 1001
NlaIV	GGNNCC	1 cut(s)	353
NmuCI	GTSAC	2 cut(s)	471, 1014
NsbI	TGCGCA	1 cut(s)	639
NsiI	ATGCAT	2 cut(s)	789, 797
NspI	RCATGY	3 cut(s)	787, 799, 1001
NspV	TTCGAA	1 cut(s)	885
PciSI	GCTCTTC	1 cut(s)	887
PdmI	GAANNNNTTC	1 cut(s)	613
PfeI	GAWTC	3 cut(s)	238, 267, 511
PkrI	GCNGC	3 cut(s)	246, 393, 563
PleI	GAGTC	4 cut(s)	123, 623, 731, 983
PmaCI	CACGTG	1 cut(s)	304
PmlI	CACGTG	1 cut(s)	304
PpsI	GAGTC	4 cut(s)	123, 623, 731, 983
Ppu21I	YACGTR	1 cut(s)	304
PspCI	CACGTG	1 cut(s)	304
PspFI	CCCAGC	1 cut(s)	345
PspN4I	GGNNCC	1 cut(s)	353
PspPI	GGNCC	1 cut(s)	399
PstI	CTGCAG	1 cut(s)	1023
PstNI	CAGNNNCTG	1 cut(s)	632
PsuI	RGATCY	2 cut(s)	139, 757
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
RseI	CAYNNNNRTG	1 cut(s)	575
SapI	GCTCTTC	1 cut(s)	887
SaqAI	TTAA	1 cut(s)	566
SatI	GCNGC	3 cut(s)	245, 392, 562
Sau3AI	GATC	8 cut(s)	26, 139, 660, 679, 757, 807, 970, 1026
Sau96I	GGNCC	1 cut(s)	399
SchI	GAGTC	4 cut(s)	123, 623, 732, 984
SduI	GDGCHC	3 cut(s)	236, 703, 882
SfaNI	GCATC	5 cut(s)	148, 625, 760, 796, 908
SfcI	CTRYAG	1 cut(s)	1019
SfuI	TTCGAA	1 cut(s)	885
SmiMI	CAYNNNNRTG	1 cut(s)	575
Sse9I	AATT	5 cut(s)	217, 466, 552, 742, 986
SsiI	CCGC	6 cut(s)	5, 94, 182, 336, 349, 482
SspMI	CTAG	1 cut(s)	456
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	2 cut(s)	374, 877
TaiI	ACGT	3 cut(s)	279, 306, 700
TaqI	TCGA	2 cut(s)	885, 973
TasI	AATT	5 cut(s)	217, 466, 552, 742, 986
TfiI	GAWTC	3 cut(s)	238, 267, 511
Tru1I	TTAA	1 cut(s)	566
Tru9I	TTAA	1 cut(s)	566
TscAI	CASTG	5 cut(s)	173, 266, 379, 880, 1023
TseFI	GTSAC	2 cut(s)	471, 1014
TseI	GCWGC	3 cut(s)	244, 391, 561
Tsp45I	GTSAC	2 cut(s)	471, 1014
TspDTI	ATGAA	5 cut(s)	383, 396, 492, 790, 876
TspGWI	ACGGA	3 cut(s)	334, 718, 750
TspRI	CASTG	5 cut(s)	173, 266, 379, 880, 1023
VneI	GTGCAC	1 cut(s)	699
XapI	RAATTY	1 cut(s)	742
XceI	RCATGY	3 cut(s)	787, 799, 1001
XcmI	CCANNNNNNNNNTGG	1 cut(s)	442
XmiI	GTMKAC	1 cut(s)	537
XmnI	GAANNNNTTC	1 cut(s)	613
XspI	CTAG	1 cut(s)	456
ZraI	GACGTC	1 cut(s)	277
Zsp2I	ATGCAT	2 cut(s)	789, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.