Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007908.1

Orthogroup ID

OG0011454

Physical Location & Seq

Genomic Coordinates Reverse (-)

33498 .. 38052

Gene Structure 4555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007908.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1596 bp

atgtcaagcagcgaacaagagcgatcggcaacaaactcagcgccgccggacgagtcgctgcgaatggcggtggccatctctcttctccgatcaaagcttctccaaaagcaaagccactcttctccttcccaaaactccgacgctctccgatggaagcggaaggccaaggagcggaagcaagagcttctgagactccggcaagatctgaaagaagccgaagatgcttcgcagtgcgacctgtttccgcaaagcgcttcctgcaagtgctatttcttcgacaatttggggaagctgagcccgaatcggctgccggaagcttctcagtgcagattcaatgacgtcttgcgacgccgatttctcagacacgtgcgtttcaaggaaaggagaagaagaaccggcggttcttcccagcgttaccacttttcagacatgaacagtgaagatgaaatggagctgcttagggcctcagttgactttcttgtggagctttgtgaaaccagttctccggtggaggaggctagttttttgaattggtcacaccaagcggtagattttattttagcttcattgaagaatctgttatcaactgcaaagaacgtagacctcatagaaggaattgtcagcagcttaatcacacgtatgattacaaggatgtgtttccccttgcaaggaaatgcatcaaaacaatcagactctgatgtgcagttcttcatccagcacttgatacgaaaacttggtaccgatccctacattggacaacgtgcactttttgcagtttctcagagagtcttcattctggcagagagtttccttttctcagatccatttgatgatgcttttacaaacatgcatcaatgcatgttcatactgatccagcttattgagtttttggtgtctgattacttatcagtatggtcaaaggatgaaggtttcgacactgtgcttttcgaagagtgggtggcatcagttcttcacgctcgtaaagcattggaagttttggaaagcagaaatgggctatatgcattatacatggatcgagtcatagctcatcaaagttctttgaatccagatagtgcggttcttggtcagaaaatgcaacaccctgcaaagaatgatcctagtgtgtttcacttgaataggaagcttgggattcacatgaacttaatccgtaaagttcctaaaatacctcggcccagagcgaagctaggtgacgaagcagcccgccaagctctgacgaagcagccggccaagcgagcagcgaagcagtctgccaagcaaggctgcgaagctaggcgacgaagctccggcgaagctaggagacgaagcagccggccaagggaggctgcgaagctaggcgatgaagctccggcgaagctaggcaacgaatcaaccggcccagtgagcggcgaagcgaggctgcgaagccggcgaagtgaggaggcgaatccaacaaaccgaggttgcaaagtaacctgcgaactgaggctgcgaatccggcgaagggaggctgagaatcaggcgaagcaaggctgcgaagctggcaaagtgaggcggcgaattcggcgaaccgaggctgcaaagcaaccggctaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000280 GO:0003006 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009553 GO:0009555 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0034641 GO:0035825 GO:0042138 GO:0043170 GO:0043934 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0051026 GO:0051276 GO:0051321 GO:0051704 GO:0061982 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

531

Amino Acids

60.41

Weight (kDa)

9.82

Isoelectric Point (pI)

71.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57880
fragaria_vesca	FvH4_1g00730 FvH4_1g00730
malus_domestica	MD15G1150700.v1.1
prunus_persica	Prupe.7G265000_v2.0.a1
pyrus_communis	pycom15g13500
rosa_chinensis	RchiOBHm_Chr2g0085451
rosa_laevigata	RLG00000015689 RLG00000015690 RLG00000015691
rosa_multiflora	Rmu_sc0004926.1_g000021 Rmu_sc0004926.1_g000026 Rmu_sc0007908.1_g000011
rosa_roxburghii	Rroxscaffold_2G00155370
rosa_rugosa	Rorug01G0460500
rosa_samantha	Rh2AG008700 Rh2BG010000 Rh2CG010500 Rh2DG011000
rosa_wichuraiana	Rw2G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	342
Acc36I	ACCTGC	1 cut(s)	1481
Acc65I	GGTACC	1 cut(s)	737
AccB1I	GGYRCC	1 cut(s)	737
AccBSI	CCGCTC	2 cut(s)	172, 1404
AccI	GTMKAC	1 cut(s)	600
AclWI	GGATC	5 cut(s)	737, 815, 865, 1041, 1109
AcoI	YGGCCR	3 cut(s)	72, 1245, 1331
AcsI	RAATTY	1 cut(s)	1557
AcvI	CACGTG	1 cut(s)	367
AcyI	GRCGYC	2 cut(s)	339, 349
AfaI	GTAC	1 cut(s)	739
AfeI	AGCGCT	1 cut(s)	253
AfiI	CCNNNNNNNGG	6 cut(s)	171, 668, 752, 1336, 1403, 1501
AflIII	ACRYGT	2 cut(s)	364, 635
AgsI	TTSAA	6 cut(s)	334, 376, 529, 571, 1063, 1135
Alw21I	GWGCWC	1 cut(s)	766
Alw26I	GTCTC	2 cut(s)	184, 1312
Alw44I	GTGCAC	1 cut(s)	762
AlwI	GGATC	5 cut(s)	737, 815, 865, 1041, 1109
AlwNI	CAGNNNCTG	1 cut(s)	695
Aor51HI	AGCGCT	1 cut(s)	253
AoxI	GGCC	7 cut(s)	72, 162, 462, 1190, 1245, 1331, 1393
ApaLI	GTGCAC	1 cut(s)	762
ApoI	RAATTY	1 cut(s)	1557
Asp718I	GGTACC	1 cut(s)	737
AspLEI	GCGC	2 cut(s)	43, 254
AspS9I	GGNCC	3 cut(s)	462, 1191, 1394
AsuHPI	GGTGA	1 cut(s)	1220
AsuII	TTCGAA	1 cut(s)	948
BaeGI	GKGCMC	1 cut(s)	766
BalI	TGGCCA	1 cut(s)	74
BanI	GGYRCC	1 cut(s)	737
BanII	GRGCYC	1 cut(s)	299
BbrPI	CACGTG	1 cut(s)	367
BbsI	GAAGAC	1 cut(s)	781
Bbv12I	GWGCWC	1 cut(s)	766
BccI	CCATC	2 cut(s)	83, 144
BcgI	CGANNNNNNTGC	2 cut(s)	289, 323
BcoDI	GTCTC	2 cut(s)	184, 1312
BfaI	CTAG	7 cut(s)	519, 1119, 1205, 1290, 1314, 1352, 1376
BfoI	RGCGCY	2 cut(s)	44, 255
BfuAI	ACCTGC	1 cut(s)	1481
BglII	AGATCT	1 cut(s)	202
BlpI	GCTNAGC	1 cut(s)	293
BmgT120I	GGNCC	3 cut(s)	462, 1191, 1394
BmiI	GGNNCC	1 cut(s)	739
BmrI	ACTGGG	1 cut(s)	1391
BmsI	GCATC	5 cut(s)	211, 686, 823, 859, 971
BmuI	ACTGGG	1 cut(s)	1391
BpiI	GAAGAC	1 cut(s)	781
Bpu10I	CCTNAGC	1 cut(s)	458
Bpu1102I	GCTNAGC	1 cut(s)	293
Bpu14I	TTCGAA	1 cut(s)	948
BsaAI	YACGTR	2 cut(s)	367, 638
BsaHI	GRCGYC	2 cut(s)	339, 349
BsaJI	CCNNGG	5 cut(s)	165, 1187, 1334, 1456, 1569
BsaWI	WCCGGW	1 cut(s)	505
BsaXI	ACNNNNNCTCC	2 cut(s)	487, 517
Bsc4I	CCNNNNNNNGG	6 cut(s)	171, 668, 752, 1336, 1403, 1501
Bse118I	RCCGGY	6 cut(s)	395, 1243, 1329, 1391, 1425, 1585
Bse1I	ACTGG	2 cut(s)	498, 1397
BseDI	CCNNGG	5 cut(s)	165, 1187, 1334, 1456, 1569
BseGI	GGATG	3 cut(s)	657, 711, 928
BseLI	CCNNNNNNNGG	6 cut(s)	171, 668, 752, 1336, 1403, 1501
BseNI	ACTGG	2 cut(s)	498, 1397
BseRI	GAGGAG	2 cut(s)	527, 1451
BseSI	GKGCMC	1 cut(s)	766
BseYI	CCCAGC	1 cut(s)	408
BsgI	GTGCAG	2 cut(s)	346, 722
Bsh1285I	CGRYCG	1 cut(s)	26
BshFI	GGCC	7 cut(s)	74, 164, 464, 1192, 1247, 1333, 1395
BshNI	GGYRCC	1 cut(s)	737
BsiEI	CGRYCG	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	766
BslI	CCNNNNNNNGG	6 cut(s)	171, 668, 752, 1336, 1403, 1501
BsmAI	GTCTC	2 cut(s)	184, 1312
BsmBI	CGTCTC	1 cut(s)	1312
BsnI	GGCC	7 cut(s)	74, 164, 464, 1192, 1247, 1333, 1395
Bsp119I	TTCGAA	1 cut(s)	948
Bsp1286I	GDGCHC	2 cut(s)	299, 766
Bsp143I	GATC	8 cut(s)	23, 89, 202, 742, 820, 870, 1033, 1114
Bsp1720I	GCTNAGC	1 cut(s)	293
BspANI	GGCC	7 cut(s)	74, 164, 464, 1192, 1247, 1333, 1395
BspLI	GGNNCC	1 cut(s)	739
BspMI	ACCTGC	1 cut(s)	1481
BspPI	GGATC	5 cut(s)	737, 815, 865, 1041, 1109
BspT104I	TTCGAA	1 cut(s)	948
BspT107I	GGYRCC	1 cut(s)	737
BsrBI	CCGCTC	2 cut(s)	172, 1404
BsrFI	RCCGGY	6 cut(s)	395, 1243, 1329, 1391, 1425, 1585
BsrI	ACTGG	2 cut(s)	498, 1397
BssAI	RCCGGY	6 cut(s)	395, 1243, 1329, 1391, 1425, 1585
BssECI	CCNNGG	5 cut(s)	165, 1187, 1334, 1456, 1569
BssMI	GATC	8 cut(s)	23, 89, 202, 742, 820, 870, 1033, 1114
BssNI	GRCGYC	2 cut(s)	339, 349
BssT1I	CCWWGG	2 cut(s)	165, 1334
Bst4CI	ACNGT	2 cut(s)	437, 940
Bst6I	CTCTTC	3 cut(s)	87, 124, 945
BstACI	GRCGYC	2 cut(s)	339, 349
BstAPI	GCANNNNNTGC	1 cut(s)	770
BstBAI	YACGTR	2 cut(s)	367, 638
BstBI	TTCGAA	1 cut(s)	948
BstC8I	GCNNGC	6 cut(s)	1222, 1245, 1254, 1331, 1427, 1540
BstF5I	GGATG	3 cut(s)	657, 711, 928
BstH2I	RGCGCY	2 cut(s)	44, 255
BstHHI	GCGC	2 cut(s)	43, 254
BstKTI	GATC	8 cut(s)	26, 92, 205, 745, 823, 873, 1036, 1117
BstMAI	GTCTC	2 cut(s)	184, 1312
BstMBI	GATC	8 cut(s)	23, 89, 202, 742, 820, 870, 1033, 1114
BstMCI	CGRYCG	1 cut(s)	26
BstNSI	RCATGY	2 cut(s)	850, 862
BstSLI	GKGCMC	1 cut(s)	766
BstV2I	GAAGAC	1 cut(s)	781
BstX2I	RGATCY	2 cut(s)	202, 820
BstYI	RGATCY	2 cut(s)	202, 820
BsuRI	GGCC	7 cut(s)	74, 164, 464, 1192, 1247, 1333, 1395
BtgZI	GCGATG	1 cut(s)	1371
BtsCI	GGATG	3 cut(s)	657, 711, 928
BtsI	GCAGTG	1 cut(s)	236
BtsIMutI	CAGTG	5 cut(s)	236, 329, 442, 936, 1404
BveI	ACCTGC	1 cut(s)	1481
Cac8I	GCNNGC	6 cut(s)	1222, 1245, 1254, 1331, 1427, 1540
CaiI	CAGNNNCTG	1 cut(s)	695
CfoI	GCGC	2 cut(s)	43, 254
Cfr10I	RCCGGY	6 cut(s)	395, 1243, 1329, 1391, 1425, 1585
Cfr13I	GGNCC	3 cut(s)	462, 1191, 1394
CseI	GACGC	2 cut(s)	149, 357
Csp6I	GTAC	1 cut(s)	738
CviAII	CATG	5 cut(s)	430, 847, 859, 1030, 1156
CviQI	GTAC	1 cut(s)	738
DpnI	GATC	8 cut(s)	25, 91, 204, 744, 822, 872, 1035, 1116
DpnII	GATC	8 cut(s)	23, 89, 202, 742, 820, 870, 1033, 1114
EaeI	YGGCCR	3 cut(s)	72, 1245, 1331
Eam1104I	CTCTTC	3 cut(s)	87, 124, 945
EarI	CTCTTC	3 cut(s)	87, 124, 945
Eco130I	CCWWGG	2 cut(s)	165, 1334
Eco24I	GRGCYC	1 cut(s)	299
Eco47III	AGCGCT	1 cut(s)	253
Eco72I	CACGTG	1 cut(s)	367
EcoO109I	RGGNCCY	1 cut(s)	462
EcoRI	GAATTC	1 cut(s)	1557
EcoT14I	CCWWGG	2 cut(s)	165, 1334
EcoT22I	ATGCAT	4 cut(s)	679, 852, 860, 1024
EcoT38I	GRGCYC	1 cut(s)	299
ErhI	CCWWGG	2 cut(s)	165, 1334
Esp3I	CGTCTC	1 cut(s)	1312
FaeI	CATG	5 cut(s)	433, 850, 862, 1033, 1159
FalI	AAGNNNNNCTT	2 cut(s)	103, 135
FatI	CATG	5 cut(s)	429, 846, 858, 1029, 1155
FauI	CCCGC	1 cut(s)	1229
FblI	GTMKAC	1 cut(s)	600
FokI	GGATG	3 cut(s)	664, 698, 935
FriOI	GRGCYC	1 cut(s)	299
FspBI	CTAG	7 cut(s)	519, 1119, 1205, 1290, 1314, 1352, 1376
GlaI	GCGC	2 cut(s)	42, 253
GsaI	CCCAGC	1 cut(s)	412
HaeII	RGCGCY	2 cut(s)	44, 255
HaeIII	GGCC	7 cut(s)	74, 164, 464, 1192, 1247, 1333, 1395
HgaI	GACGC	2 cut(s)	149, 357
HhaI	GCGC	2 cut(s)	43, 254
Hin1I	GRCGYC	2 cut(s)	339, 349
Hin1II	CATG	5 cut(s)	433, 850, 862, 1033, 1159
Hin6I	GCGC	2 cut(s)	41, 252
HinP1I	GCGC	2 cut(s)	41, 252
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HindIII	AAGCTT	3 cut(s)	95, 315, 1142
HphI	GGTGA	1 cut(s)	1220
Hpy166II	GTNNAC	3 cut(s)	472, 601, 764
Hpy188III	TCNNGA	1 cut(s)	1067
Hpy8I	GTNNAC	3 cut(s)	472, 601, 764
Hpy99I	CGWCG	3 cut(s)	143, 351, 1299
HpyAV	CCTTC	5 cut(s)	135, 154, 605, 920, 1494
HpyCH4III	ACNGT	2 cut(s)	437, 940
HpyCH4IV	ACGT	5 cut(s)	339, 366, 597, 637, 760
HpySE526I	ACGT	5 cut(s)	339, 366, 597, 637, 760
Hsp92I	GRCGYC	2 cut(s)	339, 349
Hsp92II	CATG	5 cut(s)	433, 850, 862, 1033, 1159
HspAI	GCGC	2 cut(s)	41, 252
KpnI	GGTACC	1 cut(s)	741
KroI	GCCGGC	3 cut(s)	1243, 1329, 1425
KroNI	GCCGGC	3 cut(s)	1245, 1331, 1427
Kzo9I	GATC	8 cut(s)	23, 89, 202, 742, 820, 870, 1033, 1114
LmnI	GCTCC	5 cut(s)	169, 451, 484, 1307, 1369
LweI	GCATC	5 cut(s)	211, 686, 823, 859, 971
MaeI	CTAG	7 cut(s)	519, 1119, 1205, 1290, 1314, 1352, 1376
MaeII	ACGT	5 cut(s)	339, 366, 597, 637, 760
MaeIII	GTNAC	4 cut(s)	413, 534, 1208, 1468
MalI	GATC	8 cut(s)	25, 91, 204, 744, 822, 872, 1035, 1116
MbiI	CCGCTC	2 cut(s)	172, 1404
MboI	GATC	8 cut(s)	23, 89, 202, 742, 820, 870, 1033, 1114
MflI	RGATCY	2 cut(s)	202, 820
MhlI	GDGCHC	2 cut(s)	299, 766
MlsI	TGGCCA	1 cut(s)	74
MluCI	AATT	4 cut(s)	280, 529, 615, 1557
MluNI	TGGCCA	1 cut(s)	74
MlyI	GAGTC	5 cut(s)	62, 186, 686, 795, 1047
MmeI	TCCRAC	2 cut(s)	162, 1472
Mox20I	TGGCCA	1 cut(s)	74
Mph1103I	ATGCAT	4 cut(s)	679, 852, 860, 1024
MroNI	GCCGGC	3 cut(s)	1243, 1329, 1425
MscI	TGGCCA	1 cut(s)	74
MseI	TTAA	2 cut(s)	629, 1163
MslI	CAYNNNNRTG	1 cut(s)	638
Msp20I	TGGCCA	1 cut(s)	74
NaeI	GCCGGC	3 cut(s)	1245, 1331, 1427
NdeII	GATC	8 cut(s)	23, 89, 202, 742, 820, 870, 1033, 1114
NgoMIV	GCCGGC	3 cut(s)	1243, 1329, 1425
NlaIII	CATG	5 cut(s)	433, 850, 862, 1033, 1159
NlaIV	GGNNCC	1 cut(s)	739
NmeAIII	GCCGAG	1 cut(s)	1168
NmuCI	GTSAC	2 cut(s)	534, 1208
NsiI	ATGCAT	4 cut(s)	679, 852, 860, 1024
NspI	RCATGY	2 cut(s)	850, 862
NspV	TTCGAA	1 cut(s)	948
PdiI	GCCGGC	3 cut(s)	1245, 1331, 1427
PfeI	GAWTC	9 cut(s)	301, 330, 574, 1063, 1150, 1385, 1444, 1491, 1513
Ple19I	CGATCG	1 cut(s)	26
PleI	GAGTC	5 cut(s)	61, 186, 686, 794, 1046
PmaCI	CACGTG	1 cut(s)	367
PmlI	CACGTG	1 cut(s)	367
PpsI	GAGTC	5 cut(s)	61, 186, 686, 794, 1046
Ppu21I	YACGTR	2 cut(s)	367, 638
PspCI	CACGTG	1 cut(s)	367
PspFI	CCCAGC	1 cut(s)	408
PspN4I	GGNNCC	1 cut(s)	739
PspPI	GGNCC	3 cut(s)	462, 1191, 1394
PstNI	CAGNNNCTG	1 cut(s)	695
PsuI	RGATCY	2 cut(s)	202, 820
PvuI	CGATCG	1 cut(s)	26
RsaI	GTAC	1 cut(s)	739
RsaNI	GTAC	1 cut(s)	738
RseI	CAYNNNNRTG	1 cut(s)	638
SaqAI	TTAA	2 cut(s)	629, 1163
Sau3AI	GATC	8 cut(s)	23, 89, 202, 742, 820, 870, 1033, 1114
Sau96I	GGNCC	3 cut(s)	462, 1191, 1394
SchI	GAGTC	5 cut(s)	62, 186, 686, 795, 1047
SduI	GDGCHC	2 cut(s)	299, 766
SfaNI	GCATC	5 cut(s)	211, 686, 823, 859, 971
SfuI	TTCGAA	1 cut(s)	948
SmiMI	CAYNNNNRTG	1 cut(s)	638
Sse9I	AATT	4 cut(s)	280, 529, 615, 1557
SspMI	CTAG	7 cut(s)	519, 1119, 1205, 1290, 1314, 1352, 1376
StyI	CCWWGG	2 cut(s)	165, 1334
TaaI	ACNGT	2 cut(s)	437, 940
TaiI	ACGT	5 cut(s)	342, 369, 600, 640, 763
TaqI	TCGA	4 cut(s)	276, 933, 948, 1036
TasI	AATT	4 cut(s)	280, 529, 615, 1557
TauI	GCSGC	3 cut(s)	46, 1407, 1555
TfiI	GAWTC	9 cut(s)	301, 330, 574, 1063, 1150, 1385, 1444, 1491, 1513
Tru1I	TTAA	2 cut(s)	629, 1163
Tru9I	TTAA	2 cut(s)	629, 1163
TscAI	CASTG	5 cut(s)	236, 329, 442, 943, 1404
TseFI	GTSAC	2 cut(s)	534, 1208
Tsp45I	GTSAC	2 cut(s)	534, 1208
TspDTI	ATGAA	9 cut(s)	446, 459, 555, 700, 781, 853, 939, 1172, 1374
TspGWI	ACGGA	1 cut(s)	1157
TspRI	CASTG	5 cut(s)	236, 329, 442, 943, 1404
VneI	GTGCAC	1 cut(s)	762
XapI	RAATTY	1 cut(s)	1557
XceI	RCATGY	2 cut(s)	850, 862
XcmI	CCANNNNNNNNNTGG	1 cut(s)	505
XmiI	GTMKAC	1 cut(s)	600
XspI	CTAG	7 cut(s)	519, 1119, 1205, 1290, 1314, 1352, 1376
ZraI	GACGTC	1 cut(s)	340
Zsp2I	ATGCAT	4 cut(s)	679, 852, 860, 1024

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.