Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0011454

Physical Location & Seq

Genomic Coordinates Forward (+)

643726 .. 644842

Gene Structure 1117 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG011000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGATTACAAGGATGTGTTTCCCCTTGCAAGGAAATGCATCAAAACAATCAGACTCTGATGTGCAGTTCTTCATCCAGCACTTGATACGAAAACTTGGTACCGATCCCTACATTGGACAACGTGCACTTTTTGCAGTTTCTCAGAGAGTCTCCATTCTGGCAGAGAGTTTCCTTTTCTCAGATCCATTTGATGATGCTTTTACAAACATGCATCAATGCATGTTCATACTGATCCAGCTTATTGAGTTTTTGGTGTCTGATTACTTATCAGTATGGTCAAAGGATGAAGGTTTCGACACTGTGCTTTTCGAAGAGTGGGTGGCATCAGTTCTTCACGCTCGTAAAGCATTGGAAGTTTTGGAAAGCAGAAATGGGCTATATGCATTATACATGGATCGAGTCATAGGTGAATTGGCCAAGCATGTGAGCCTTACTATGTCACTGCAGAAGATCAAACGTGAAATTTTAGATAAGCTATTCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000280 GO:0003006 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009553 GO:0009555 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0034641 GO:0035825 GO:0042138 GO:0043170 GO:0043934 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0051026 GO:0051276 GO:0051321 GO:0051704 GO:0061982 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

161

Amino Acids

18.61

Weight (kDa)

5.69

Isoelectric Point (pI)

43.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57880
fragaria_vesca	FvH4_1g00730 FvH4_1g00730
malus_domestica	MD15G1150700.v1.1
prunus_persica	Prupe.7G265000_v2.0.a1
pyrus_communis	pycom15g13500
rosa_chinensis	RchiOBHm_Chr2g0085451
rosa_laevigata	RLG00000015689 RLG00000015690 RLG00000015691
rosa_multiflora	Rmu_sc0004926.1_g000021 Rmu_sc0004926.1_g000026 Rmu_sc0007908.1_g000011
rosa_roxburghii	Rroxscaffold_2G00155370
rosa_rugosa	Rorug01G0460500
rosa_samantha	Rh2AG008700 Rh2BG010000 Rh2CG010500 Rh2DG011000
rosa_wichuraiana	Rw2G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	98
AccB1I	GGYRCC	1 cut(s)	98
AclWI	GGATC	4 cut(s)	98, 176, 226, 402
AcoI	YGGCCR	1 cut(s)	414
AcsI	RAATTY	1 cut(s)	462
AfaI	GTAC	1 cut(s)	100
AfiI	CCNNNNNNNGG	2 cut(s)	29, 113
AluBI	AGCT	2 cut(s)	238, 475
AluI	AGCT	2 cut(s)	238, 475
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	1 cut(s)	154
Alw44I	GTGCAC	1 cut(s)	123
AlwI	GGATC	4 cut(s)	98, 176, 226, 402
AlwNI	CAGNNNCTG	1 cut(s)	56
AoxI	GGCC	1 cut(s)	414
ApaLI	GTGCAC	1 cut(s)	123
ApoI	RAATTY	1 cut(s)	462
Asp718I	GGTACC	1 cut(s)	98
AsuHPI	GGTGA	1 cut(s)	419
AsuII	TTCGAA	1 cut(s)	309
BaeGI	GKGCMC	1 cut(s)	127
BalI	TGGCCA	1 cut(s)	416
BanI	GGYRCC	1 cut(s)	98
Bbv12I	GWGCWC	1 cut(s)	127
BcoDI	GTCTC	1 cut(s)	154
BfmI	CTRYAG	1 cut(s)	443
BmiI	GGNNCC	1 cut(s)	100
BmsI	GCATC	4 cut(s)	47, 184, 220, 332
Bpu14I	TTCGAA	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 113
BseGI	GGATG	3 cut(s)	18, 72, 289
BseLI	CCNNNNNNNGG	2 cut(s)	29, 113
BseMII	CTCAG	2 cut(s)	155, 192
BseSI	GKGCMC	1 cut(s)	127
BsgI	GTGCAG	1 cut(s)	83
BshFI	GGCC	1 cut(s)	416
BshNI	GGYRCC	1 cut(s)	98
BsiHKAI	GWGCWC	1 cut(s)	127
BslI	CCNNNNNNNGG	2 cut(s)	29, 113
BsmAI	GTCTC	1 cut(s)	154
BsnI	GGCC	1 cut(s)	416
Bsp119I	TTCGAA	1 cut(s)	309
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	5 cut(s)	103, 181, 231, 394, 450
BspANI	GGCC	1 cut(s)	416
BspCNI	CTCAG	2 cut(s)	154, 191
BspLI	GGNNCC	1 cut(s)	100
BspMAI	CTGCAG	1 cut(s)	447
BspPI	GGATC	4 cut(s)	98, 176, 226, 402
BspT104I	TTCGAA	1 cut(s)	309
BspT107I	GGYRCC	1 cut(s)	98
BssMI	GATC	5 cut(s)	103, 181, 231, 394, 450
Bst4CI	ACNGT	1 cut(s)	301
Bst6I	CTCTTC	1 cut(s)	306
BstAPI	GCANNNNNTGC	1 cut(s)	131
BstBI	TTCGAA	1 cut(s)	309
BstDEI	CTNAG	2 cut(s)	141, 178
BstF5I	GGATG	3 cut(s)	18, 72, 289
BstKTI	GATC	5 cut(s)	106, 184, 234, 397, 453
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	5 cut(s)	103, 181, 231, 394, 450
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 344
BstNSI	RCATGY	3 cut(s)	211, 223, 425
BstSFI	CTRYAG	1 cut(s)	443
BstSLI	GKGCMC	1 cut(s)	127
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	416
BtsCI	GGATG	3 cut(s)	18, 72, 289
BtsI	GCAGTG	1 cut(s)	440
BtsIMutI	CAGTG	3 cut(s)	297, 440, 481
CaiI	CAGNNNCTG	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	99
CviAII	CATG	4 cut(s)	208, 220, 391, 422
CviJI	RGCY	5 cut(s)	238, 376, 416, 429, 475
CviKI_1	RGCY	5 cut(s)	238, 376, 416, 429, 475
CviQI	GTAC	1 cut(s)	99
DdeI	CTNAG	2 cut(s)	141, 178
DpnI	GATC	5 cut(s)	105, 183, 233, 396, 452
DpnII	GATC	5 cut(s)	103, 181, 231, 394, 450
EaeI	YGGCCR	1 cut(s)	414
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
EcoT22I	ATGCAT	4 cut(s)	40, 213, 221, 385
FaeI	CATG	4 cut(s)	211, 223, 394, 425
FatI	CATG	4 cut(s)	207, 219, 390, 421
FokI	GGATG	3 cut(s)	25, 59, 296
HaeIII	GGCC	1 cut(s)	416
Hin1II	CATG	4 cut(s)	211, 223, 394, 425
HinfI	GANTC	3 cut(s)	53, 147, 399
HphI	GGTGA	1 cut(s)	419
Hpy166II	GTNNAC	1 cut(s)	125
Hpy188I	TCNGA	5 cut(s)	52, 58, 144, 181, 259
Hpy8I	GTNNAC	1 cut(s)	125
HpyAV	CCTTC	1 cut(s)	281
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4IV	ACGT	2 cut(s)	121, 457
HpyCH4V	TGCA	9 cut(s)	28, 38, 64, 125, 134, 211, 219, 383, 445
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 344
HpyF3I	CTNAG	2 cut(s)	141, 178
HpySE526I	ACGT	2 cut(s)	121, 457
Hsp92II	CATG	4 cut(s)	211, 223, 394, 425
KpnI	GGTACC	1 cut(s)	102
Kzo9I	GATC	5 cut(s)	103, 181, 231, 394, 450
LpnPI	CCDG	3 cut(s)	89, 143, 248
LweI	GCATC	4 cut(s)	47, 184, 220, 332
MaeII	ACGT	2 cut(s)	121, 457
MaeIII	GTNAC	1 cut(s)	438
MalI	GATC	5 cut(s)	105, 183, 233, 396, 452
MboI	GATC	5 cut(s)	103, 181, 231, 394, 450
MboII	GAAGA	4 cut(s)	61, 323, 323, 460
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	1 cut(s)	127
MlsI	TGGCCA	1 cut(s)	416
MluCI	AATT	2 cut(s)	410, 462
MluNI	TGGCCA	1 cut(s)	416
MlyI	GAGTC	3 cut(s)	47, 156, 408
Mox20I	TGGCCA	1 cut(s)	416
Mph1103I	ATGCAT	4 cut(s)	40, 213, 221, 385
MscI	TGGCCA	1 cut(s)	416
Msp20I	TGGCCA	1 cut(s)	416
MwoI	GCNNNNNNNGC	2 cut(s)	131, 344
NdeII	GATC	5 cut(s)	103, 181, 231, 394, 450
NlaIII	CATG	4 cut(s)	211, 223, 394, 425
NlaIV	GGNNCC	1 cut(s)	100
NmuCI	GTSAC	1 cut(s)	438
NsiI	ATGCAT	4 cut(s)	40, 213, 221, 385
NspI	RCATGY	3 cut(s)	211, 223, 425
NspV	TTCGAA	1 cut(s)	309
PleI	GAGTC	3 cut(s)	47, 155, 407
PpsI	GAGTC	3 cut(s)	47, 155, 407
PspN4I	GGNNCC	1 cut(s)	100
PstI	CTGCAG	1 cut(s)	447
PstNI	CAGNNNCTG	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	181
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
Sau3AI	GATC	5 cut(s)	103, 181, 231, 394, 450
SchI	GAGTC	3 cut(s)	47, 156, 408
SduI	GDGCHC	1 cut(s)	127
SetI	ASST	6 cut(s)	124, 240, 292, 409, 460, 477
SfaNI	GCATC	4 cut(s)	47, 184, 220, 332
SfcI	CTRYAG	1 cut(s)	443
SfuI	TTCGAA	1 cut(s)	309
Sse9I	AATT	2 cut(s)	410, 462
TaaI	ACNGT	1 cut(s)	301
TaiI	ACGT	2 cut(s)	124, 460
TaqI	TCGA	3 cut(s)	294, 309, 397
TasI	AATT	2 cut(s)	410, 462
TscAI	CASTG	2 cut(s)	304, 447
TseFI	GTSAC	1 cut(s)	438
Tsp45I	GTSAC	1 cut(s)	438
TspDTI	ATGAA	3 cut(s)	61, 214, 300
TspRI	CASTG	2 cut(s)	304, 447
VneI	GTGCAC	1 cut(s)	123
XapI	RAATTY	1 cut(s)	462
XceI	RCATGY	3 cut(s)	211, 223, 425
Zsp2I	ATGCAT	4 cut(s)	40, 213, 221, 385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.