Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0011454

Physical Location & Seq

Genomic Coordinates Forward (+)

793730 .. 796209

Gene Structure 2480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG008700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGTCAAGCAGCGAACAAGAGCGATCGGCAACAAACTCAGCGCCGCCGGACGAGTCGCTGCGAATGGCGGTGGCCATCTCTCTTCTCCGATCAAAGCTTCTCCAAAAGCAAAGCCACTCTTCTCCTTCTCAAAACTCCGATGCTCTCCGATGGAAGCGGAAGGCCAAGGAGCGGAAGCAAGAGCTTCTGAGACTCCGGCAAGATCTGAAAGAAGCCGAAGATGCTTCGCAGTGCGACCTGTTTCCGCAAAGCGCTTCCTGCAAGTGCTATTTCTTCGACAATTTGGGGAAGCTGAGCCCGAATCGGCTGCCGGAAGCTTCTCAGTGCAGATTCAATGACGTCTTGCGACGCCGATTTCTCAGACACGTGCGTTTCAAGGAAAGGAGAAGAAGAACCGGCGGTTCTTCCCAGCGTTACCACTTTTCAGACATGAACAGTGAAGATGAAATGGAGCTGCTTAGGGCCTCAGTTGACTTTCTTGTGGAGCTTTGTGAAACCAGTTCTCCGGTGGAGGAGGCTAGTTTTTTGAATTGGTCACACCAAGCGGTAGATTTTATTTTAGCTTCATTGAAGAATCTGTTATCAACTGCAAAGAACGTAGAACTCATAGAAGGAATTGTCAGCAGCTTAATCACATGTATGATTACAAGGATGTGTTGCCCCTTGCAAGGAAATGCATCAAAACAATCAGACTCTGATGTGCAGTTCTTCGTCCAGCACTTGATACGAAAACTTGGTACCGATCCCTACATTGGACAACGTGCACTTTTTGCAGTTTCTCAGAGAGTCTCCATTCTGGCAGAGAGTTTCCTTTTCTCAGATCCATTTGATGATGCTTTTACAAACATGCATCAATGCATGTTCATAATGATCCAGCTTATTGAGTTTTTGGTGTCTGATTACTTATCAGTATGGTCAAAGGATGAAGGTTTCGACACTGTGCTTTTCGAAGAGTGGGTGGCATCAGCTCTTCACGCTCGTAAAGCATTGGAAGTTTTGGAAAGCAGAAATGGGCTATATGCATTATACATGGATCGAGTCATAGGTGAATTGGCCAAGCATGTGAGCCTTACTATGTCACTGCAGAAGATCAAACGTGAAATTTTAGATAAGCTATTCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000280 GO:0003006 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009553 GO:0009555 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0034641 GO:0035825 GO:0042138 GO:0043170 GO:0043934 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0051026 GO:0051276 GO:0051321 GO:0051704 GO:0061982 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

374

Amino Acids

42.95

Weight (kDa)

7.11

Isoelectric Point (pI)

65.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57880
fragaria_vesca	FvH4_1g00730 FvH4_1g00730
malus_domestica	MD15G1150700.v1.1
prunus_persica	Prupe.7G265000_v2.0.a1
pyrus_communis	pycom15g13500
rosa_chinensis	RchiOBHm_Chr2g0085451
rosa_laevigata	RLG00000015689 RLG00000015690 RLG00000015691
rosa_multiflora	Rmu_sc0004926.1_g000021 Rmu_sc0004926.1_g000026 Rmu_sc0007908.1_g000011
rosa_roxburghii	Rroxscaffold_2G00155370
rosa_rugosa	Rorug01G0460500
rosa_samantha	Rh2AG008700 Rh2BG010000 Rh2CG010500 Rh2DG011000
rosa_wichuraiana	Rw2G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	342
Acc65I	GGTACC	1 cut(s)	737
AccB1I	GGYRCC	1 cut(s)	737
AccBSI	CCGCTC	1 cut(s)	172
AciI	CCGC	7 cut(s)	44, 68, 157, 172, 245, 399, 545
AclWI	GGATC	4 cut(s)	737, 815, 865, 1041
AcoI	YGGCCR	2 cut(s)	72, 1053
AcsI	RAATTY	1 cut(s)	1101
AcvI	CACGTG	1 cut(s)	367
AcyI	GRCGYC	2 cut(s)	339, 349
AfaI	GTAC	1 cut(s)	739
AfeI	AGCGCT	1 cut(s)	253
AfiI	CCNNNNNNNGG	3 cut(s)	171, 668, 752
AflIII	ACRYGT	2 cut(s)	364, 635
AgsI	TTSAA	4 cut(s)	334, 376, 529, 571
Alw21I	GWGCWC	1 cut(s)	766
Alw26I	GTCTC	2 cut(s)	184, 793
Alw44I	GTGCAC	1 cut(s)	762
AlwI	GGATC	4 cut(s)	737, 815, 865, 1041
AlwNI	CAGNNNCTG	1 cut(s)	695
Aor51HI	AGCGCT	1 cut(s)	253
AoxI	GGCC	4 cut(s)	72, 162, 462, 1053
ApaLI	GTGCAC	1 cut(s)	762
ApeKI	GCWGC	5 cut(s)	9, 58, 307, 454, 624
ApoI	RAATTY	1 cut(s)	1101
Asp718I	GGTACC	1 cut(s)	737
AspLEI	GCGC	2 cut(s)	43, 254
AspS9I	GGNCC	1 cut(s)	462
AsuHPI	GGTGA	1 cut(s)	1058
AsuII	TTCGAA	1 cut(s)	948
BaeGI	GKGCMC	1 cut(s)	766
BalI	TGGCCA	2 cut(s)	74, 1055
BanI	GGYRCC	1 cut(s)	737
BanII	GRGCYC	1 cut(s)	299
BbrPI	CACGTG	1 cut(s)	367
Bbv12I	GWGCWC	1 cut(s)	766
BbvI	GCAGC	5 cut(s)	21, 45, 294, 441, 636
BccI	CCATC	2 cut(s)	83, 144
BcgI	CGANNNNNNTGC	2 cut(s)	289, 323
BcoDI	GTCTC	2 cut(s)	184, 793
BfaI	CTAG	1 cut(s)	519
BfmI	CTRYAG	1 cut(s)	1082
BfoI	RGCGCY	2 cut(s)	44, 255
BglII	AGATCT	1 cut(s)	202
BisI	GCNGC	6 cut(s)	10, 44, 59, 308, 455, 625
BlpI	GCTNAGC	1 cut(s)	293
BlsI	GCNGC	6 cut(s)	11, 45, 60, 309, 456, 626
BmgT120I	GGNCC	1 cut(s)	462
BmiI	GGNNCC	1 cut(s)	739
BmsI	GCATC	6 cut(s)	130, 211, 686, 823, 859, 971
Bpu10I	CCTNAGC	1 cut(s)	458
Bpu1102I	GCTNAGC	1 cut(s)	293
Bpu14I	TTCGAA	1 cut(s)	948
BsaAI	YACGTR	1 cut(s)	367
BsaHI	GRCGYC	2 cut(s)	339, 349
BsaJI	CCNNGG	1 cut(s)	165
BsaWI	WCCGGW	1 cut(s)	505
BsaXI	ACNNNNNCTCC	2 cut(s)	487, 517
Bsc4I	CCNNNNNNNGG	3 cut(s)	171, 668, 752
Bse118I	RCCGGY	1 cut(s)	395
Bse1I	ACTGG	1 cut(s)	498
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	2 cut(s)	657, 928
BseLI	CCNNNNNNNGG	3 cut(s)	171, 668, 752
BseMII	CTCAG	8 cut(s)	51, 179, 284, 335, 373, 480, 794, 831
BseNI	ACTGG	1 cut(s)	498
BseRI	GAGGAG	1 cut(s)	527
BseSI	GKGCMC	1 cut(s)	766
BseXI	GCAGC	5 cut(s)	21, 45, 294, 441, 636
BseYI	CCCAGC	1 cut(s)	408
BsgI	GTGCAG	2 cut(s)	346, 722
Bsh1285I	CGRYCG	1 cut(s)	26
BshFI	GGCC	4 cut(s)	74, 164, 464, 1055
BshNI	GGYRCC	1 cut(s)	737
BsiEI	CGRYCG	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	766
BsiSI	CCGG	5 cut(s)	47, 196, 311, 396, 506
BslI	CCNNNNNNNGG	3 cut(s)	171, 668, 752
BsmAI	GTCTC	2 cut(s)	184, 793
BsnI	GGCC	4 cut(s)	74, 164, 464, 1055
Bsp119I	TTCGAA	1 cut(s)	948
Bsp1286I	GDGCHC	2 cut(s)	299, 766
Bsp143I	GATC	8 cut(s)	23, 89, 202, 742, 820, 870, 1033, 1089
Bsp1720I	GCTNAGC	1 cut(s)	293
BspACI	CCGC	7 cut(s)	44, 68, 157, 172, 245, 399, 545
BspANI	GGCC	4 cut(s)	74, 164, 464, 1055
BspCNI	CTCAG	8 cut(s)	50, 180, 285, 334, 372, 479, 793, 830
BspLI	GGNNCC	1 cut(s)	739
BspMAI	CTGCAG	1 cut(s)	1086
BspPI	GGATC	4 cut(s)	737, 815, 865, 1041
BspQI	GCTCTTC	1 cut(s)	975
BspT104I	TTCGAA	1 cut(s)	948
BspT107I	GGYRCC	1 cut(s)	737
BsrBI	CCGCTC	1 cut(s)	172
BsrFI	RCCGGY	1 cut(s)	395
BsrI	ACTGG	1 cut(s)	498
BssAI	RCCGGY	1 cut(s)	395
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	8 cut(s)	23, 89, 202, 742, 820, 870, 1033, 1089
BssNI	GRCGYC	2 cut(s)	339, 349
BssT1I	CCWWGG	1 cut(s)	165
Bst4CI	ACNGT	2 cut(s)	437, 940
Bst6I	CTCTTC	4 cut(s)	87, 124, 945, 975
BstACI	GRCGYC	2 cut(s)	339, 349
BstAPI	GCANNNNNTGC	1 cut(s)	770
BstBAI	YACGTR	1 cut(s)	367
BstBI	TTCGAA	1 cut(s)	948
BstDEI	CTNAG	9 cut(s)	37, 188, 293, 321, 359, 458, 466, 780, 817
BstF5I	GGATG	2 cut(s)	657, 928
BstH2I	RGCGCY	2 cut(s)	44, 255
BstHHI	GCGC	2 cut(s)	43, 254
BstKTI	GATC	8 cut(s)	26, 92, 205, 745, 823, 873, 1036, 1092
BstMAI	GTCTC	2 cut(s)	184, 793
BstMBI	GATC	8 cut(s)	23, 89, 202, 742, 820, 870, 1033, 1089
BstMCI	CGRYCG	1 cut(s)	26
BstMWI	GCNNNNNNNGC	5 cut(s)	221, 258, 770, 974, 983
BstNSI	RCATGY	4 cut(s)	639, 850, 862, 1064
BstSFI	CTRYAG	1 cut(s)	1082
BstSLI	GKGCMC	1 cut(s)	766
BstV1I	GCAGC	5 cut(s)	21, 45, 294, 441, 636
BstX2I	RGATCY	2 cut(s)	202, 820
BstYI	RGATCY	2 cut(s)	202, 820
BsuRI	GGCC	4 cut(s)	74, 164, 464, 1055
BtsCI	GGATG	2 cut(s)	657, 928
BtsI	GCAGTG	2 cut(s)	236, 1079
BtsIMutI	CAGTG	6 cut(s)	236, 329, 442, 936, 1079, 1120
CaiI	CAGNNNCTG	1 cut(s)	695
CfoI	GCGC	2 cut(s)	43, 254
Cfr10I	RCCGGY	1 cut(s)	395
Cfr13I	GGNCC	1 cut(s)	462
CseI	GACGC	1 cut(s)	357
Csp6I	GTAC	1 cut(s)	738
CviAII	CATG	6 cut(s)	430, 636, 847, 859, 1030, 1061
CviQI	GTAC	1 cut(s)	738
DdeI	CTNAG	9 cut(s)	37, 188, 293, 321, 359, 458, 466, 780, 817
DpnI	GATC	8 cut(s)	25, 91, 204, 744, 822, 872, 1035, 1091
DpnII	GATC	8 cut(s)	23, 89, 202, 742, 820, 870, 1033, 1089
EaeI	YGGCCR	2 cut(s)	72, 1053
Eam1104I	CTCTTC	4 cut(s)	87, 124, 945, 975
EarI	CTCTTC	4 cut(s)	87, 124, 945, 975
Eco130I	CCWWGG	1 cut(s)	165
Eco24I	GRGCYC	1 cut(s)	299
Eco47III	AGCGCT	1 cut(s)	253
Eco72I	CACGTG	1 cut(s)	367
EcoO109I	RGGNCCY	1 cut(s)	462
EcoT14I	CCWWGG	1 cut(s)	165
EcoT22I	ATGCAT	4 cut(s)	679, 852, 860, 1024
EcoT38I	GRGCYC	1 cut(s)	299
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	6 cut(s)	433, 639, 850, 862, 1033, 1064
FalI	AAGNNNNNCTT	2 cut(s)	103, 135
FatI	CATG	6 cut(s)	429, 635, 846, 858, 1029, 1060
Fnu4HI	GCNGC	6 cut(s)	10, 44, 59, 308, 455, 625
FokI	GGATG	2 cut(s)	664, 935
FriOI	GRGCYC	1 cut(s)	299
Fsp4HI	GCNGC	6 cut(s)	10, 44, 59, 308, 455, 625
FspBI	CTAG	1 cut(s)	519
GlaI	GCGC	2 cut(s)	42, 253
GluI	GCNGC	6 cut(s)	10, 44, 59, 308, 455, 625
GsaI	CCCAGC	1 cut(s)	412
HaeII	RGCGCY	2 cut(s)	44, 255
HaeIII	GGCC	4 cut(s)	74, 164, 464, 1055
HapII	CCGG	5 cut(s)	47, 196, 311, 396, 506
HgaI	GACGC	1 cut(s)	357
HhaI	GCGC	2 cut(s)	43, 254
Hin1I	GRCGYC	2 cut(s)	339, 349
Hin1II	CATG	6 cut(s)	433, 639, 850, 862, 1033, 1064
Hin6I	GCGC	2 cut(s)	41, 252
HinP1I	GCGC	2 cut(s)	41, 252
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HindIII	AAGCTT	2 cut(s)	95, 315
HinfI	GANTC	8 cut(s)	53, 192, 301, 330, 574, 692, 786, 1038
HpaII	CCGG	5 cut(s)	47, 196, 311, 396, 506
HphI	GGTGA	1 cut(s)	1058
Hpy166II	GTNNAC	2 cut(s)	472, 764
Hpy8I	GTNNAC	2 cut(s)	472, 764
Hpy99I	CGWCG	1 cut(s)	351
HpyAV	CCTTC	4 cut(s)	135, 154, 605, 920
HpyCH4III	ACNGT	2 cut(s)	437, 940
HpyCH4IV	ACGT	5 cut(s)	339, 366, 597, 760, 1096
HpyF10VI	GCNNNNNNNGC	5 cut(s)	221, 258, 770, 974, 983
HpyF3I	CTNAG	9 cut(s)	37, 188, 293, 321, 359, 458, 466, 780, 817
HpySE526I	ACGT	5 cut(s)	339, 366, 597, 760, 1096
Hsp92I	GRCGYC	2 cut(s)	339, 349
Hsp92II	CATG	6 cut(s)	433, 639, 850, 862, 1033, 1064
HspAI	GCGC	2 cut(s)	41, 252
KpnI	GGTACC	1 cut(s)	741
Kzo9I	GATC	8 cut(s)	23, 89, 202, 742, 820, 870, 1033, 1089
LguI	GCTCTTC	1 cut(s)	975
LmnI	GCTCC	3 cut(s)	169, 451, 484
Lsp1109I	GCAGC	5 cut(s)	21, 45, 294, 441, 636
LweI	GCATC	6 cut(s)	130, 211, 686, 823, 859, 971
MaeI	CTAG	1 cut(s)	519
MaeII	ACGT	5 cut(s)	339, 366, 597, 760, 1096
MaeIII	GTNAC	3 cut(s)	413, 534, 1077
MalI	GATC	8 cut(s)	25, 91, 204, 744, 822, 872, 1035, 1091
MbiI	CCGCTC	1 cut(s)	172
MboI	GATC	8 cut(s)	23, 89, 202, 742, 820, 870, 1033, 1089
MflI	RGATCY	2 cut(s)	202, 820
MhlI	GDGCHC	2 cut(s)	299, 766
MlsI	TGGCCA	2 cut(s)	74, 1055
MluCI	AATT	5 cut(s)	280, 529, 615, 1049, 1101
MluNI	TGGCCA	2 cut(s)	74, 1055
MlyI	GAGTC	5 cut(s)	62, 186, 686, 795, 1047
MnlI	CCTC	3 cut(s)	475, 505, 508
Mox20I	TGGCCA	2 cut(s)	74, 1055
Mph1103I	ATGCAT	4 cut(s)	679, 852, 860, 1024
MscI	TGGCCA	2 cut(s)	74, 1055
MseI	TTAA	1 cut(s)	629
MslI	CAYNNNNRTG	1 cut(s)	638
Msp20I	TGGCCA	2 cut(s)	74, 1055
MspI	CCGG	5 cut(s)	47, 196, 311, 396, 506
MwoI	GCNNNNNNNGC	5 cut(s)	221, 258, 770, 974, 983
NdeII	GATC	8 cut(s)	23, 89, 202, 742, 820, 870, 1033, 1089
NlaIII	CATG	6 cut(s)	433, 639, 850, 862, 1033, 1064
NlaIV	GGNNCC	1 cut(s)	739
NmuCI	GTSAC	2 cut(s)	534, 1077
NsiI	ATGCAT	4 cut(s)	679, 852, 860, 1024
NspI	RCATGY	4 cut(s)	639, 850, 862, 1064
NspV	TTCGAA	1 cut(s)	948
PciI	ACATGT	1 cut(s)	635
PciSI	GCTCTTC	1 cut(s)	975
PfeI	GAWTC	3 cut(s)	301, 330, 574
PkrI	GCNGC	6 cut(s)	11, 45, 60, 309, 456, 626
Ple19I	CGATCG	1 cut(s)	26
PleI	GAGTC	5 cut(s)	61, 186, 686, 794, 1046
PmaCI	CACGTG	1 cut(s)	367
PmlI	CACGTG	1 cut(s)	367
PpsI	GAGTC	5 cut(s)	61, 186, 686, 794, 1046
Ppu21I	YACGTR	1 cut(s)	367
PscI	ACATGT	1 cut(s)	635
PspCI	CACGTG	1 cut(s)	367
PspFI	CCCAGC	1 cut(s)	408
PspN4I	GGNNCC	1 cut(s)	739
PspPI	GGNCC	1 cut(s)	462
PstI	CTGCAG	1 cut(s)	1086
PstNI	CAGNNNCTG	1 cut(s)	695
PsuI	RGATCY	2 cut(s)	202, 820
PvuI	CGATCG	1 cut(s)	26
RsaI	GTAC	1 cut(s)	739
RsaNI	GTAC	1 cut(s)	738
RseI	CAYNNNNRTG	1 cut(s)	638
SapI	GCTCTTC	1 cut(s)	975
SaqAI	TTAA	1 cut(s)	629
SatI	GCNGC	6 cut(s)	10, 44, 59, 308, 455, 625
Sau3AI	GATC	8 cut(s)	23, 89, 202, 742, 820, 870, 1033, 1089
Sau96I	GGNCC	1 cut(s)	462
SchI	GAGTC	5 cut(s)	62, 186, 686, 795, 1047
SduI	GDGCHC	2 cut(s)	299, 766
SfaNI	GCATC	6 cut(s)	130, 211, 686, 823, 859, 971
SfcI	CTRYAG	1 cut(s)	1082
SfuI	TTCGAA	1 cut(s)	948
SmiMI	CAYNNNNRTG	1 cut(s)	638
Sse9I	AATT	5 cut(s)	280, 529, 615, 1049, 1101
SsiI	CCGC	7 cut(s)	44, 68, 157, 172, 245, 399, 545
SspMI	CTAG	1 cut(s)	519
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	2 cut(s)	437, 940
TaiI	ACGT	5 cut(s)	342, 369, 600, 763, 1099
TaqI	TCGA	4 cut(s)	276, 933, 948, 1036
TasI	AATT	5 cut(s)	280, 529, 615, 1049, 1101
TauI	GCSGC	1 cut(s)	46
TfiI	GAWTC	3 cut(s)	301, 330, 574
Tru1I	TTAA	1 cut(s)	629
Tru9I	TTAA	1 cut(s)	629
TscAI	CASTG	5 cut(s)	236, 329, 442, 943, 1086
TseFI	GTSAC	2 cut(s)	534, 1077
TseI	GCWGC	5 cut(s)	9, 58, 307, 454, 624
Tsp45I	GTSAC	2 cut(s)	534, 1077
TspDTI	ATGAA	5 cut(s)	446, 459, 555, 853, 939
TspRI	CASTG	5 cut(s)	236, 329, 442, 943, 1086
VneI	GTGCAC	1 cut(s)	762
XapI	RAATTY	1 cut(s)	1101
XceI	RCATGY	4 cut(s)	639, 850, 862, 1064
XcmI	CCANNNNNNNNNTGG	1 cut(s)	505
XspI	CTAG	1 cut(s)	519
ZraI	GACGTC	1 cut(s)	340
Zsp2I	ATGCAT	4 cut(s)	679, 852, 860, 1024

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.