Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0011454

Physical Location & Seq

Genomic Coordinates Forward (+)

693923 .. 705779

Gene Structure 11857 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015691

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGAATGCAAGTGCTACAGGAACATTGAAGGACAATTCATTGAAGAATCTGTTATCAACTGCAAAGAATTTAGACCTCATAGAAGGAATTGTCAGCAGCTTAATCACGTGTATGATTACAAGGGTGTGTTGCCCCTTGCAAGGAAATGCATCAAAACAATCAGACTCTGATGCGCAGTTCTTCGCCCAGCACTTGATACGAAAACTTGTTTTTCAGAGAGTCTCCGTTCTGGCAGAGAATTTCCTTTTCTCAGATCCATTTGATGATGCTTTTACAAACATGCATCAATGCATGTTCATACTGATCCAGCTAATTGAGTTTTTGGTGTCTGATTACTTATCAGTATGGTCAAAGGATGAAGGTTTTGACACTGTGCTTTTCGAAGAGTGGGTGGCATCAGTTCTTCACGCTCGTAAAGCATTGGAGGTTTTGGAAAGCAGAAATGGGCTATATGCGTTATACATGGATCGAGTCATAGGTGAGTTGGCCAAGCACGTGAGCCTTACAATGTCACTGCAGAAGATCAAACGTGAAATTTTAGATAAGCTATTCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000280 GO:0003006 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009553 GO:0009555 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0034641 GO:0035825 GO:0042138 GO:0043170 GO:0043934 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0051026 GO:0051276 GO:0051321 GO:0051704 GO:0061982 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

20.98

Weight (kDa)

5.71

Isoelectric Point (pI)

37.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57880
fragaria_vesca	FvH4_1g00730 FvH4_1g00730
malus_domestica	MD15G1150700.v1.1
prunus_persica	Prupe.7G265000_v2.0.a1
pyrus_communis	pycom15g13500
rosa_chinensis	RchiOBHm_Chr2g0085451
rosa_laevigata	RLG00000015689 RLG00000015690 RLG00000015691
rosa_multiflora	Rmu_sc0004926.1_g000021 Rmu_sc0004926.1_g000026 Rmu_sc0007908.1_g000011
rosa_roxburghii	Rroxscaffold_2G00155370
rosa_rugosa	Rorug01G0460500
rosa_samantha	Rh2AG008700 Rh2BG010000 Rh2CG010500 Rh2DG011000
rosa_wichuraiana	Rw2G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	174
AclWI	GGATC	3 cut(s)	248, 298, 474
AcoI	YGGCCR	1 cut(s)	486
AcsI	RAATTY	3 cut(s)	67, 238, 534
AcvI	CACGTG	2 cut(s)	108, 496
AfiI	CCNNNNNNNGG	1 cut(s)	140
AflIII	ACRYGT	1 cut(s)	107
AgsI	TTSAA	2 cut(s)	28, 43
AluBI	AGCT	3 cut(s)	99, 310, 547
AluI	AGCT	3 cut(s)	99, 310, 547
Alw26I	GTCTC	1 cut(s)	226
AlwI	GGATC	3 cut(s)	248, 298, 474
AlwNI	CAGNNNCTG	1 cut(s)	167
AoxI	GGCC	1 cut(s)	486
ApeKI	GCWGC	1 cut(s)	96
ApoI	RAATTY	3 cut(s)	67, 238, 534
AspLEI	GCGC	1 cut(s)	175
AsuHPI	GGTGA	1 cut(s)	491
AsuII	TTCGAA	1 cut(s)	381
BalI	TGGCCA	1 cut(s)	488
BbrPI	CACGTG	2 cut(s)	108, 496
BbvI	GCAGC	1 cut(s)	108
BcoDI	GTCTC	1 cut(s)	226
BfmI	CTRYAG	2 cut(s)	15, 515
BisI	GCNGC	1 cut(s)	97
BlsI	GCNGC	1 cut(s)	98
BmsI	GCATC	5 cut(s)	158, 160, 256, 292, 404
Bpu14I	TTCGAA	1 cut(s)	381
BsaAI	YACGTR	2 cut(s)	108, 496
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
BseGI	GGATG	1 cut(s)	361
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMII	CTCAG	1 cut(s)	264
BseXI	GCAGC	1 cut(s)	108
BseYI	CCCAGC	1 cut(s)	186
BshFI	GGCC	1 cut(s)	488
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	1 cut(s)	226
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	488
Bsp119I	TTCGAA	1 cut(s)	381
Bsp143I	GATC	4 cut(s)	253, 303, 466, 522
BspANI	GGCC	1 cut(s)	488
BspCNI	CTCAG	1 cut(s)	263
BspMAI	CTGCAG	1 cut(s)	519
BspPI	GGATC	3 cut(s)	248, 298, 474
BspT104I	TTCGAA	1 cut(s)	381
BssMI	GATC	4 cut(s)	253, 303, 466, 522
Bst4CI	ACNGT	1 cut(s)	373
Bst6I	CTCTTC	1 cut(s)	378
BstBAI	YACGTR	2 cut(s)	108, 496
BstBI	TTCGAA	1 cut(s)	381
BstDEI	CTNAG	1 cut(s)	250
BstF5I	GGATG	1 cut(s)	361
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	4 cut(s)	256, 306, 469, 525
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	4 cut(s)	253, 303, 466, 522
BstMWI	GCNNNNNNNGC	1 cut(s)	416
BstNSI	RCATGY	2 cut(s)	283, 295
BstSFI	CTRYAG	2 cut(s)	15, 515
BstV1I	GCAGC	1 cut(s)	108
BstX2I	RGATCY	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	253
BsuRI	GGCC	1 cut(s)	488
BtsCI	GGATG	1 cut(s)	361
BtsI	GCAGTG	1 cut(s)	512
BtsIMutI	CAGTG	3 cut(s)	369, 512, 553
CaiI	CAGNNNCTG	1 cut(s)	167
CfoI	GCGC	1 cut(s)	175
CviAII	CATG	3 cut(s)	280, 292, 463
CviJI	RGCY	6 cut(s)	99, 310, 448, 488, 501, 547
CviKI_1	RGCY	6 cut(s)	99, 310, 448, 488, 501, 547
DdeI	CTNAG	1 cut(s)	250
DpnI	GATC	4 cut(s)	255, 305, 468, 524
DpnII	GATC	4 cut(s)	253, 303, 466, 522
EaeI	YGGCCR	1 cut(s)	486
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Eco72I	CACGTG	2 cut(s)	108, 496
EcoT22I	ATGCAT	3 cut(s)	151, 285, 293
FaeI	CATG	3 cut(s)	283, 295, 466
FatI	CATG	3 cut(s)	279, 291, 462
Fnu4HI	GCNGC	1 cut(s)	97
FokI	GGATG	1 cut(s)	368
Fsp4HI	GCNGC	1 cut(s)	97
FspI	TGCGCA	1 cut(s)	174
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	1 cut(s)	97
GsaI	CCCAGC	1 cut(s)	190
HaeIII	GGCC	1 cut(s)	488
HhaI	GCGC	1 cut(s)	175
Hin1II	CATG	3 cut(s)	283, 295, 466
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HinfI	GANTC	4 cut(s)	46, 164, 219, 471
HphI	GGTGA	1 cut(s)	491
Hpy188I	TCNGA	5 cut(s)	163, 169, 216, 253, 331
HpyAV	CCTTC	3 cut(s)	22, 77, 353
HpyCH4III	ACNGT	1 cut(s)	373
HpyCH4IV	ACGT	3 cut(s)	107, 495, 529
HpyCH4V	TGCA	7 cut(s)	8, 62, 139, 149, 283, 291, 517
HpyF10VI	GCNNNNNNNGC	1 cut(s)	416
HpyF3I	CTNAG	1 cut(s)	250
HpySE526I	ACGT	3 cut(s)	107, 495, 529
Hsp92II	CATG	3 cut(s)	283, 295, 466
HspAI	GCGC	1 cut(s)	173
Kzo9I	GATC	4 cut(s)	253, 303, 466, 522
LpnPI	CCDG	4 cut(s)	3, 200, 215, 320
Lsp1109I	GCAGC	1 cut(s)	108
LweI	GCATC	5 cut(s)	158, 160, 256, 292, 404
MaeII	ACGT	3 cut(s)	107, 495, 529
MaeIII	GTNAC	1 cut(s)	510
MalI	GATC	4 cut(s)	255, 305, 468, 524
MboI	GATC	4 cut(s)	253, 303, 466, 522
MboII	GAAGA	5 cut(s)	55, 172, 395, 395, 532
MflI	RGATCY	1 cut(s)	253
MlsI	TGGCCA	1 cut(s)	488
MluCI	AATT	6 cut(s)	34, 67, 87, 238, 312, 534
MluNI	TGGCCA	1 cut(s)	488
MlyI	GAGTC	3 cut(s)	158, 228, 480
MnlI	CCTC	2 cut(s)	86, 418
Mox20I	TGGCCA	1 cut(s)	488
Mph1103I	ATGCAT	3 cut(s)	151, 285, 293
MscI	TGGCCA	1 cut(s)	488
MseI	TTAA	1 cut(s)	101
MslI	CAYNNNNRTG	1 cut(s)	110
Msp20I	TGGCCA	1 cut(s)	488
Mva1269I	GAATGC	1 cut(s)	10
MwoI	GCNNNNNNNGC	1 cut(s)	416
NdeII	GATC	4 cut(s)	253, 303, 466, 522
NlaIII	CATG	3 cut(s)	283, 295, 466
NmuCI	GTSAC	1 cut(s)	510
NsbI	TGCGCA	1 cut(s)	174
NsiI	ATGCAT	3 cut(s)	151, 285, 293
NspI	RCATGY	2 cut(s)	283, 295
NspV	TTCGAA	1 cut(s)	381
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	1 cut(s)	46
PkrI	GCNGC	1 cut(s)	98
PleI	GAGTC	3 cut(s)	158, 227, 479
PmaCI	CACGTG	2 cut(s)	108, 496
PmlI	CACGTG	2 cut(s)	108, 496
PpsI	GAGTC	3 cut(s)	158, 227, 479
Ppu21I	YACGTR	2 cut(s)	108, 496
PspCI	CACGTG	2 cut(s)	108, 496
PspFI	CCCAGC	1 cut(s)	186
PstI	CTGCAG	1 cut(s)	519
PstNI	CAGNNNCTG	1 cut(s)	167
PsuI	RGATCY	1 cut(s)	253
RseI	CAYNNNNRTG	1 cut(s)	110
SaqAI	TTAA	1 cut(s)	101
SatI	GCNGC	1 cut(s)	97
Sau3AI	GATC	4 cut(s)	253, 303, 466, 522
SchI	GAGTC	3 cut(s)	158, 228, 480
SfaNI	GCATC	5 cut(s)	158, 160, 256, 292, 404
SfcI	CTRYAG	2 cut(s)	15, 515
SfuI	TTCGAA	1 cut(s)	381
SmiMI	CAYNNNNRTG	1 cut(s)	110
Sse9I	AATT	6 cut(s)	34, 67, 87, 238, 312, 534
TaaI	ACNGT	1 cut(s)	373
TaiI	ACGT	3 cut(s)	110, 498, 532
TaqI	TCGA	2 cut(s)	381, 469
TasI	AATT	6 cut(s)	34, 67, 87, 238, 312, 534
TfiI	GAWTC	1 cut(s)	46
Tru1I	TTAA	1 cut(s)	101
Tru9I	TTAA	1 cut(s)	101
TscAI	CASTG	2 cut(s)	376, 519
TseFI	GTSAC	1 cut(s)	510
TseI	GCWGC	1 cut(s)	96
Tsp45I	GTSAC	1 cut(s)	510
TspDTI	ATGAA	4 cut(s)	17, 27, 286, 372
TspGWI	ACGGA	1 cut(s)	214
TspRI	CASTG	2 cut(s)	376, 519
XapI	RAATTY	3 cut(s)	67, 238, 534
XceI	RCATGY	2 cut(s)	283, 295
Zsp2I	ATGCAT	3 cut(s)	151, 285, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.