Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009923

Physical Location & Seq

Genomic Coordinates Reverse (-)

23451066 .. 23452963

Gene Structure 1898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G57910.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGAATCCAACTCACGGAGATTTCACTCCCTTGAACTCTAATCATTTCGAGGATCCAAAGGTCAGGTTTAGGCATCATAGCCTTATGCAAGACTATGGAGAATTGCATATGGAAACCGAAGCTATGAGAAAAAGGTTACAGGCAGTGCGAGAAAGAAAGGCAACACTAATGGCTGAAGTCAGATTTCTGCGACGGAGATACAGACATTTGAGACAAGACCAGCCACAAGAGATTAAAAAGGTCAGAAGATCAAATGGTGGGAAGAAGATCCGAGTGGAAGTGTCTCCTAGTAACAAAAGTGAGGCGGAAACTAAGCATGTTTCGCTTCCTGACTTAAACCACTCGGAAAAGGCTCACGATGAAACCAAAACCAGTCCTAAGAGAAGAGTTCCTTTGTTTGATCTAAATCAGATATCTGGAGAAGAAGAGCAAGAAACAGAGGCAGTGGACAATAATCAAGAGAACACGAGAGTTGAAGAAAGTAATTCATGTAAGAGATTAATGATCAGTAGCATTGAGATGCAGCAGAAAGATGTGAAGCCATCTTCTTGCAGGAATGGCGGAAACGGATCAAATAAGAGGAAAATTTCATGGCAAGATCCTGTCGCAGCTCTCAGAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

24.09

Weight (kDa)

9.59

Isoelectric Point (pI)

65.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57910 AT5G57910
fragaria_vesca	FvH4_1g00810
malus_domestica	MD02G1006500.v1.1 MD15G1151500.v1.1
prunus_persica	Prupe.7G264400_v2.0.a1 Prupe.7G264400_v2.0.a1
pyrus_communis	pycom02g00540 pycom15g13540
rosa_chinensis	RchiOBHm_Chr2g0085521
rosa_laevigata	RLG00000015696
rosa_multiflora	Rmu_sc0007908.1_g000005 Rmu_sc0020315.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155300
rosa_rugosa	Rorug01G0460900 Rorug01G0461000
rosa_samantha	Rh2AG009600 Rh2BG010600 Rh2CG011200 Rh2DG011900
rosa_wichuraiana	Rw2G000890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	305, 561
AclWI	GGATC	5 cut(s)	47, 60, 262, 577, 593
AcsI	RAATTY	1 cut(s)	585
AcuI	CTGAAG	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	14
AgsI	TTSAA	2 cut(s)	34, 476
AluBI	AGCT	2 cut(s)	122, 611
AluI	AGCT	2 cut(s)	122, 611
Alw26I	GTCTC	2 cut(s)	205, 288
AlwI	GGATC	5 cut(s)	47, 60, 262, 577, 593
ApeKI	GCWGC	2 cut(s)	523, 608
ApoI	RAATTY	1 cut(s)	585
AseI	ATTAAT	1 cut(s)	500
BamHI	GGATCC	1 cut(s)	52
BauI	CACGAG	1 cut(s)	466
BbvI	GCAGC	2 cut(s)	535, 620
BccI	CCATC	1 cut(s)	550
BclI	TGATCA	1 cut(s)	504
BcoDI	GTCTC	2 cut(s)	205, 288
BfaI	CTAG	1 cut(s)	288
BisI	GCNGC	2 cut(s)	524, 609
BlsI	GCNGC	2 cut(s)	525, 610
BmiI	GGNNCC	1 cut(s)	54
BmsI	GCATC	2 cut(s)	82, 510
BpmI	CTGGAG	1 cut(s)	438
BsaBI	GATNNNNATC	1 cut(s)	405
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse1I	ACTGG	1 cut(s)	372
Bse8I	GATNNNNATC	1 cut(s)	405
BseJI	GATNNNNATC	1 cut(s)	405
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseNI	ACTGG	1 cut(s)	372
BseXI	GCAGC	2 cut(s)	535, 620
BslI	CCNNNNNNNGG	1 cut(s)	14
BsmAI	GTCTC	2 cut(s)	205, 288
Bsp143I	GATC	7 cut(s)	52, 248, 267, 400, 504, 569, 598
BspACI	CCGC	2 cut(s)	305, 561
BspLI	GGNNCC	1 cut(s)	54
BspPI	GGATC	5 cut(s)	47, 60, 262, 577, 593
BspQI	GCTCTTC	1 cut(s)	420
BsrI	ACTGG	1 cut(s)	372
BssMI	GATC	7 cut(s)	52, 248, 267, 400, 504, 569, 598
BssSI	CACGAG	1 cut(s)	466
Bst2BI	CACGAG	1 cut(s)	466
Bst6I	CTCTTC	2 cut(s)	379, 420
BstDEI	CTNAG	3 cut(s)	312, 378, 614
BstKTI	GATC	7 cut(s)	55, 251, 270, 403, 507, 572, 601
BstMAI	GTCTC	2 cut(s)	205, 288
BstMBI	GATC	7 cut(s)	52, 248, 267, 400, 504, 569, 598
BstMWI	GCNNNNNNNGC	2 cut(s)	322, 558
BstNSI	RCATGY	1 cut(s)	320
BstV1I	GCAGC	2 cut(s)	535, 620
BstX2I	RGATCY	3 cut(s)	52, 267, 598
BstYI	RGATCY	3 cut(s)	52, 267, 598
BtsI	GCAGTG	2 cut(s)	150, 450
BtsIMutI	CAGTG	2 cut(s)	150, 450
CviAII	CATG	3 cut(s)	317, 489, 591
CviJI	RGCY	7 cut(s)	81, 122, 173, 223, 353, 541, 611
CviKI_1	RGCY	7 cut(s)	81, 122, 173, 223, 353, 541, 611
DdeI	CTNAG	3 cut(s)	312, 378, 614
DpnI	GATC	7 cut(s)	54, 250, 269, 402, 506, 571, 600
DpnII	GATC	7 cut(s)	52, 248, 267, 400, 504, 569, 598
Eam1104I	CTCTTC	2 cut(s)	379, 420
EarI	CTCTTC	2 cut(s)	379, 420
EciI	GGCGGA	2 cut(s)	320, 576
Eco32I	GATATC	1 cut(s)	414
Eco57I	CTGAAG	1 cut(s)	195
EcoRV	GATATC	1 cut(s)	414
FaeI	CATG	3 cut(s)	320, 492, 594
FaiI	YATR	9 cut(s)	78, 86, 96, 108, 110, 125, 318, 490, 592
FalI	AAGNNNNNCTT	2 cut(s)	376, 408
FatI	CATG	3 cut(s)	316, 488, 590
FauNDI	CATATG	1 cut(s)	108
FbaI	TGATCA	1 cut(s)	504
Fnu4HI	GCNGC	2 cut(s)	524, 609
Fsp4HI	GCNGC	2 cut(s)	524, 609
FspBI	CTAG	1 cut(s)	288
GluI	GCNGC	2 cut(s)	524, 609
GsuI	CTGGAG	1 cut(s)	438
Hin1II	CATG	3 cut(s)	320, 492, 594
HinfI	GANTC	2 cut(s)	4, 618
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	6 cut(s)	182, 245, 272, 346, 411, 617
Hpy188III	TCNNGA	4 cut(s)	329, 356, 417, 458
Hpy8I	GTNNAC	1 cut(s)	448
Hpy99I	CGWCG	1 cut(s)	195
HpyCH4V	TGCA	4 cut(s)	88, 106, 523, 552
HpyF10VI	GCNNNNNNNGC	2 cut(s)	322, 558
HpyF3I	CTNAG	3 cut(s)	312, 378, 614
Hsp92II	CATG	3 cut(s)	320, 492, 594
Ksp22I	TGATCA	1 cut(s)	504
Kzo9I	GATC	7 cut(s)	52, 248, 267, 400, 504, 569, 598
LguI	GCTCTTC	1 cut(s)	420
LpnPI	CCDG	8 cut(s)	49, 125, 233, 342, 385, 402, 538, 615
Lsp1109I	GCAGC	2 cut(s)	535, 620
LweI	GCATC	2 cut(s)	82, 510
MaeI	CTAG	1 cut(s)	288
MaeIII	GTNAC	2 cut(s)	135, 290
MalI	GATC	7 cut(s)	54, 250, 269, 402, 506, 571, 600
MboI	GATC	7 cut(s)	52, 248, 267, 400, 504, 569, 598
MboII	GAAGA	8 cut(s)	258, 274, 277, 396, 434, 437, 488, 537
MflI	RGATCY	3 cut(s)	52, 267, 598
MluCI	AATT	3 cut(s)	101, 484, 585
MmeI	TCCRAC	1 cut(s)	32
MnlI	CCTC	4 cut(s)	43, 295, 433, 573
MseI	TTAA	3 cut(s)	234, 335, 500
MslI	CAYNNNNRTG	1 cut(s)	518
MwoI	GCNNNNNNNGC	2 cut(s)	322, 558
NdeI	CATATG	1 cut(s)	108
NdeII	GATC	7 cut(s)	52, 248, 267, 400, 504, 569, 598
NlaIII	CATG	3 cut(s)	320, 492, 594
NlaIV	GGNNCC	1 cut(s)	54
NspI	RCATGY	1 cut(s)	320
PciSI	GCTCTTC	1 cut(s)	420
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	2 cut(s)	525, 610
PshBI	ATTAAT	1 cut(s)	500
PspN4I	GGNNCC	1 cut(s)	54
PsuI	RGATCY	3 cut(s)	52, 267, 598
RseI	CAYNNNNRTG	1 cut(s)	518
SapI	GCTCTTC	1 cut(s)	420
SaqAI	TTAA	3 cut(s)	234, 335, 500
SatI	GCNGC	2 cut(s)	524, 609
Sau3AI	GATC	7 cut(s)	52, 248, 267, 400, 504, 569, 598
SetI	ASST	6 cut(s)	63, 68, 124, 137, 243, 613
SfaNI	GCATC	2 cut(s)	82, 510
SmiMI	CAYNNNNRTG	1 cut(s)	518
Sse9I	AATT	3 cut(s)	101, 484, 585
SsiI	CCGC	2 cut(s)	305, 561
SspMI	CTAG	1 cut(s)	288
TaqI	TCGA	1 cut(s)	48
TasI	AATT	3 cut(s)	101, 484, 585
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	3 cut(s)	234, 335, 500
Tru9I	TTAA	3 cut(s)	234, 335, 500
TscAI	CASTG	2 cut(s)	150, 450
TseI	GCWGC	2 cut(s)	523, 608
TspDTI	ATGAA	4 cut(s)	17, 375, 477, 579
TspGWI	ACGGA	3 cut(s)	30, 208, 582
TspRI	CASTG	2 cut(s)	150, 450
VspI	ATTAAT	1 cut(s)	500
XapI	RAATTY	1 cut(s)	585
XceI	RCATGY	1 cut(s)	320
XspI	CTAG	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.