Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009923

Physical Location & Seq

Genomic Coordinates Reverse (-)

55425283 .. 55427132

Gene Structure 1850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0460900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGAGAAGGAGTCTGAGGCAGTGAACGAAGCAAGCCCCATAAGGAAGCTGGCTCTGTTCTCACTTCCGAGCCAGCCACCAGAGCCTCCAGGGATGCTGACGCCGCCGCTGCTGACGTCAGTCTCGGTTCCTTTCCAGTGGGAGGAGGCGCCGGGAAAGCCCCGACACTTCGGCGGCGGAGGAACAGAGACCAAGGCCAAGTGCGCGAGATCCTTGGAGCTGCCTCCGAGGTTGTTGGTGAGTGAGGCTAAAGTTACCAACATGCCTTCCCCGACGACTGTGCTGGATGGGCCTGAGGTGGGCCGGACTCTGTCGTTTTCGTATGCATTGAGGAGCCCGAGCAAGGAGGTTAAGGGCGGCGGCGGCGGAGGGTTTGGGTCTATGAGGTGGGCCAGGTTTCGGAAGAACAAGGAGGCTGGTGAGGGCAATTTCGACTTTTCGCCTACCGACAGCGGCGGTGATCGGACAAAGGTGAAGATTACAAGGGTTAGGAGTAAGGCTAGCTTCTTCAATGGTGCTCATCACTCAAGGTCACACATGTGGGCCAGCATCTATGAAAGCTTAAAGCAGGTGGTTCCATGGAAACGCAGACAGGAAAAACTGAGAAAATCTGCTACTGTTGGATATGAACCTCAAAATCCAATTCCCACTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

218

Amino Acids

23.88

Weight (kDa)

9.92

Isoelectric Point (pI)

59.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57910 AT5G57910
fragaria_vesca	FvH4_1g00810
malus_domestica	MD02G1006500.v1.1 MD15G1151500.v1.1
prunus_persica	Prupe.7G264400_v2.0.a1 Prupe.7G264400_v2.0.a1
pyrus_communis	pycom02g00540 pycom15g13540
rosa_chinensis	RchiOBHm_Chr2g0085521
rosa_laevigata	RLG00000015696
rosa_multiflora	Rmu_sc0007908.1_g000005 Rmu_sc0020315.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155300
rosa_rugosa	Rorug01G0460900 Rorug01G0461000
rosa_samantha	Rh2AG009600 Rh2BG010600 Rh2CG011200 Rh2DG011900
rosa_wichuraiana	Rw2G000890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	559
AatII	GACGTC	1 cut(s)	119
Acc36I	ACCTGC	1 cut(s)	559
AccB1I	GGYRCC	1 cut(s)	148
AccII	CGCG	1 cut(s)	206
AclWI	GGATC	1 cut(s)	204
AcyI	GRCGYC	3 cut(s)	101, 116, 149
AfiI	CCNNNNNNNGG	4 cut(s)	142, 299, 343, 399
AflIII	ACRYGT	1 cut(s)	537
AgsI	TTSAA	1 cut(s)	511
AjnI	CCWGG	2 cut(s)	88, 392
AleI	CACNNNNGTG	1 cut(s)	538
AluBI	AGCT	4 cut(s)	49, 220, 504, 561
AluI	AGCT	4 cut(s)	49, 220, 504, 561
Alw21I	GWGCWC	1 cut(s)	520
Alw26I	GTCTC	2 cut(s)	127, 182
AlwI	GGATC	1 cut(s)	204
Ama87I	CYCGRG	1 cut(s)	337
AoxI	GGCC	5 cut(s)	195, 290, 301, 390, 543
ApeKI	GCWGC	2 cut(s)	109, 220
AspLEI	GCGC	2 cut(s)	151, 206
AspS9I	GGNCC	4 cut(s)	290, 301, 390, 543
AsuC2I	CCSGG	1 cut(s)	153
AsuHPI	GGTGA	4 cut(s)	250, 431, 470, 484
AsuNHI	GCTAGC	1 cut(s)	500
AvaI	CYCGRG	1 cut(s)	337
AxyI	CCTNAGG	1 cut(s)	294
BanI	GGYRCC	1 cut(s)	148
BanII	GRGCYC	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	520
BbvI	GCAGC	2 cut(s)	96, 207
BccI	CCATC	1 cut(s)	281
BcgI	CGANNNNNNTGC	2 cut(s)	262, 296
BciT130I	CCWGG	2 cut(s)	90, 394
BcnI	CCSGG	1 cut(s)	153
BcoDI	GTCTC	2 cut(s)	127, 182
BfaI	CTAG	1 cut(s)	501
BfoI	RGCGCY	1 cut(s)	152
BfuAI	ACCTGC	1 cut(s)	559
BisI	GCNGC	9 cut(s)	104, 107, 110, 175, 221, 358, 361, 364, 454
BlsI	GCNGC	9 cut(s)	105, 108, 111, 176, 222, 359, 362, 365, 455
Bme1390I	CCNGG	3 cut(s)	90, 153, 394
BmeT110I	CYCGRG	1 cut(s)	337
BmgT120I	GGNCC	4 cut(s)	290, 301, 390, 543
BmiI	GGNNCC	4 cut(s)	129, 150, 335, 576
BmrFI	CCNGG	3 cut(s)	90, 153, 394
BmsI	GCATC	2 cut(s)	84, 558
BmtI	GCTAGC	1 cut(s)	504
BoxI	GACNNNNGTC	1 cut(s)	119
BpmI	CTGGAG	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	511
BpuMI	CCSGG	1 cut(s)	153
BsaHI	GRCGYC	3 cut(s)	101, 116, 149
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	5 cut(s)	89, 192, 213, 227, 578
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	4 cut(s)	142, 299, 343, 399
Bse1I	ACTGG	1 cut(s)	136
Bse21I	CCTNAGG	1 cut(s)	294
BseBI	CCWGG	2 cut(s)	90, 394
BseDI	CCNNGG	5 cut(s)	89, 192, 213, 227, 578
BseGI	GGATG	2 cut(s)	99, 292
BseLI	CCNNNNNNNGG	4 cut(s)	142, 299, 343, 399
BseMII	CTCAG	3 cut(s)	6, 285, 593
BseNI	ACTGG	1 cut(s)	136
BseRI	GAGGAG	2 cut(s)	158, 346
BseXI	GCAGC	2 cut(s)	96, 207
Bsh1236I	CGCG	1 cut(s)	206
BshFI	GGCC	5 cut(s)	197, 292, 303, 392, 545
BshNI	GGYRCC	1 cut(s)	148
BsiHKAI	GWGCWC	1 cut(s)	520
BsiHKCI	CYCGRG	1 cut(s)	337
BsiSI	CCGG	2 cut(s)	152, 304
BslI	CCNNNNNNNGG	4 cut(s)	142, 299, 343, 399
BsmAI	GTCTC	2 cut(s)	127, 182
BsnI	GGCC	5 cut(s)	197, 292, 303, 392, 545
Bso31I	GGTCTC	1 cut(s)	182
BsoBI	CYCGRG	1 cut(s)	337
Bsp1286I	GDGCHC	2 cut(s)	338, 520
Bsp143I	GATC	2 cut(s)	209, 460
Bsp19I	CCATGG	1 cut(s)	578
BspANI	GGCC	5 cut(s)	197, 292, 303, 392, 545
BspCNI	CTCAG	3 cut(s)	7, 286, 594
BspFNI	CGCG	1 cut(s)	206
BspLI	GGNNCC	4 cut(s)	129, 150, 335, 576
BspMI	ACCTGC	1 cut(s)	559
BspOI	GCTAGC	1 cut(s)	504
BspPI	GGATC	1 cut(s)	204
BspT107I	GGYRCC	1 cut(s)	148
BspTNI	GGTCTC	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	136
BssECI	CCNNGG	5 cut(s)	89, 192, 213, 227, 578
BssMI	GATC	2 cut(s)	209, 460
BssNI	GRCGYC	3 cut(s)	101, 116, 149
BssT1I	CCWWGG	3 cut(s)	192, 213, 578
Bst2UI	CCWGG	2 cut(s)	90, 394
Bst4CI	ACNGT	2 cut(s)	280, 619
BstACI	GRCGYC	3 cut(s)	101, 116, 149
BstC8I	GCNNGC	5 cut(s)	34, 51, 74, 502, 547
BstDEI	CTNAG	3 cut(s)	15, 294, 602
BstDSI	CCRYGG	1 cut(s)	578
BstF5I	GGATG	2 cut(s)	99, 292
BstFNI	CGCG	1 cut(s)	206
BstH2I	RGCGCY	1 cut(s)	152
BstHHI	GCGC	2 cut(s)	151, 206
BstKTI	GATC	2 cut(s)	212, 463
BstMAI	GTCTC	2 cut(s)	127, 182
BstMBI	GATC	2 cut(s)	209, 460
BstMWI	GCNNNNNNNGC	7 cut(s)	82, 103, 109, 157, 203, 289, 363
BstNI	CCWGG	2 cut(s)	90, 394
BstNSI	RCATGY	2 cut(s)	265, 541
BstPAI	GACNNNNGTC	1 cut(s)	119
BstSCI	CCNGG	3 cut(s)	88, 151, 392
BstUI	CGCG	1 cut(s)	206
BstV1I	GCAGC	2 cut(s)	96, 207
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
Bsu36I	CCTNAGG	1 cut(s)	294
BsuRI	GGCC	5 cut(s)	197, 292, 303, 392, 545
BtgI	CCRYGG	1 cut(s)	578
BtsCI	GGATG	2 cut(s)	99, 292
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	2 cut(s)	27, 143
BveI	ACCTGC	1 cut(s)	559
Cac8I	GCNNGC	5 cut(s)	34, 51, 74, 502, 547
CfoI	GCGC	2 cut(s)	151, 206
Cfr13I	GGNCC	4 cut(s)	290, 301, 390, 543
CseI	GACGC	1 cut(s)	109
CviAII	CATG	3 cut(s)	262, 538, 579
DdeI	CTNAG	3 cut(s)	15, 294, 602
DinI	GGCGCC	1 cut(s)	150
DpnI	GATC	2 cut(s)	211, 462
DpnII	GATC	2 cut(s)	209, 460
EciI	GGCGGA	2 cut(s)	192, 381
Eco130I	CCWWGG	3 cut(s)	192, 213, 578
Eco24I	GRGCYC	1 cut(s)	338
Eco31I	GGTCTC	1 cut(s)	182
Eco81I	CCTNAGG	1 cut(s)	294
Eco88I	CYCGRG	1 cut(s)	337
EcoRII	CCWGG	2 cut(s)	88, 392
EcoT14I	CCWWGG	3 cut(s)	192, 213, 578
EcoT22I	ATGCAT	1 cut(s)	328
EcoT38I	GRGCYC	1 cut(s)	338
EgeI	GGCGCC	1 cut(s)	150
EheI	GGCGCC	1 cut(s)	150
ErhI	CCWWGG	3 cut(s)	192, 213, 578
FaeI	CATG	3 cut(s)	265, 541, 582
FaiI	YATR	8 cut(s)	41, 263, 324, 383, 539, 555, 580, 627
FalI	AAGNNNNNCTT	2 cut(s)	488, 520
FatI	CATG	3 cut(s)	261, 537, 578
Fnu4HI	GCNGC	9 cut(s)	104, 107, 110, 175, 221, 358, 361, 364, 454
FokI	GGATG	2 cut(s)	106, 299
FriOI	GRGCYC	1 cut(s)	338
Fsp4HI	GCNGC	9 cut(s)	104, 107, 110, 175, 221, 358, 361, 364, 454
FspBI	CTAG	1 cut(s)	501
GlaI	GCGC	2 cut(s)	150, 205
GluI	GCNGC	9 cut(s)	104, 107, 110, 175, 221, 358, 361, 364, 454
GsuI	CTGGAG	1 cut(s)	72
HaeII	RGCGCY	1 cut(s)	152
HaeIII	GGCC	5 cut(s)	197, 292, 303, 392, 545
HapII	CCGG	2 cut(s)	152, 304
HgaI	GACGC	1 cut(s)	109
HhaI	GCGC	2 cut(s)	151, 206
Hin1I	GRCGYC	3 cut(s)	101, 116, 149
Hin1II	CATG	3 cut(s)	265, 541, 582
Hin6I	GCGC	2 cut(s)	149, 204
HinP1I	GCGC	2 cut(s)	149, 204
HindIII	AAGCTT	1 cut(s)	559
HinfI	GANTC	2 cut(s)	11, 307
HpaII	CCGG	2 cut(s)	152, 304
HphI	GGTGA	4 cut(s)	250, 431, 470, 484
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	5 cut(s)	16, 69, 228, 402, 465
Hpy8I	GTNNAC	1 cut(s)	25
Hpy99I	CGWCG	1 cut(s)	277
HpyAV	CCTTC	1 cut(s)	276
HpyCH4III	ACNGT	2 cut(s)	280, 619
HpyCH4IV	ACGT	1 cut(s)	116
HpyCH4V	TGCA	1 cut(s)	326
HpyF10VI	GCNNNNNNNGC	7 cut(s)	82, 103, 109, 157, 203, 289, 363
HpyF3I	CTNAG	3 cut(s)	15, 294, 602
HpySE526I	ACGT	1 cut(s)	116
Hsp92I	GRCGYC	3 cut(s)	101, 116, 149
Hsp92II	CATG	3 cut(s)	265, 541, 582
HspAI	GCGC	2 cut(s)	149, 204
KasI	GGCGCC	1 cut(s)	148
Kzo9I	GATC	2 cut(s)	209, 460
LmnI	GCTCC	2 cut(s)	217, 333
Lsp1109I	GCAGC	2 cut(s)	96, 207
LweI	GCATC	2 cut(s)	84, 558
MaeI	CTAG	1 cut(s)	501
MaeII	ACGT	1 cut(s)	116
MaeIII	GTNAC	2 cut(s)	253, 531
MalI	GATC	2 cut(s)	211, 462
MboI	GATC	2 cut(s)	209, 460
MboII	GAAGA	3 cut(s)	415, 487, 499
MflI	RGATCY	1 cut(s)	209
MhlI	GDGCHC	2 cut(s)	338, 520
MluCI	AATT	2 cut(s)	427, 642
Mly113I	GGCGCC	1 cut(s)	149
MlyI	GAGTC	2 cut(s)	20, 301
MmeI	TCCRAC	1 cut(s)	601
Mph1103I	ATGCAT	1 cut(s)	328
MseI	TTAA	2 cut(s)	351, 563
MslI	CAYNNNNRTG	1 cut(s)	538
MspA1I	CMGCKG	2 cut(s)	109, 453
MspI	CCGG	2 cut(s)	152, 304
MspR9I	CCNGG	3 cut(s)	90, 153, 394
MvaI	CCWGG	2 cut(s)	90, 394
MvnI	CGCG	1 cut(s)	206
MwoI	GCNNNNNNNGC	7 cut(s)	82, 103, 109, 157, 203, 289, 363
NarI	GGCGCC	1 cut(s)	149
NciI	CCSGG	1 cut(s)	153
NcoI	CCATGG	1 cut(s)	578
NdeII	GATC	2 cut(s)	209, 460
NheI	GCTAGC	1 cut(s)	500
NlaIII	CATG	3 cut(s)	265, 541, 582
NlaIV	GGNNCC	4 cut(s)	129, 150, 335, 576
NmuCI	GTSAC	1 cut(s)	531
NsiI	ATGCAT	1 cut(s)	328
NspI	RCATGY	2 cut(s)	265, 541
OliI	CACNNNNGTG	1 cut(s)	538
PaqCI	CACCTGC	1 cut(s)	559
PciI	ACATGT	1 cut(s)	537
PflFI	GACNNNGTC	1 cut(s)	310
PkrI	GCNGC	9 cut(s)	105, 108, 111, 176, 222, 359, 362, 365, 455
PleI	GAGTC	2 cut(s)	19, 301
PluTI	GGCGCC	1 cut(s)	152
PpsI	GAGTC	2 cut(s)	19, 301
PscI	ACATGT	1 cut(s)	537
PshAI	GACNNNNGTC	1 cut(s)	119
Psp6I	CCWGG	2 cut(s)	88, 392
PspGI	CCWGG	2 cut(s)	88, 392
PspN4I	GGNNCC	4 cut(s)	129, 150, 335, 576
PspPI	GGNCC	4 cut(s)	290, 301, 390, 543
PsuI	RGATCY	1 cut(s)	209
PsyI	GACNNNGTC	1 cut(s)	310
RseI	CAYNNNNRTG	1 cut(s)	538
SaqAI	TTAA	2 cut(s)	351, 563
SatI	GCNGC	9 cut(s)	104, 107, 110, 175, 221, 358, 361, 364, 454
Sau3AI	GATC	2 cut(s)	209, 460
Sau96I	GGNCC	4 cut(s)	290, 301, 390, 543
SchI	GAGTC	2 cut(s)	20, 301
ScrFI	CCNGG	3 cut(s)	90, 153, 394
SduI	GDGCHC	2 cut(s)	338, 520
SfaNI	GCATC	2 cut(s)	84, 558
SfoI	GGCGCC	1 cut(s)	150
SmiMI	CAYNNNNRTG	1 cut(s)	538
SmlI	CTYRAG	1 cut(s)	526
SmoI	CTYRAG	1 cut(s)	526
Sse9I	AATT	2 cut(s)	427, 642
SspDI	GGCGCC	1 cut(s)	148
SspMI	CTAG	1 cut(s)	501
StyD4I	CCNGG	3 cut(s)	88, 151, 392
StyI	CCWWGG	3 cut(s)	192, 213, 578
TaaI	ACNGT	2 cut(s)	280, 619
TaiI	ACGT	1 cut(s)	119
TaqI	TCGA	1 cut(s)	432
TasI	AATT	2 cut(s)	427, 642
TauI	GCSGC	7 cut(s)	106, 109, 177, 360, 363, 366, 456
Tru1I	TTAA	2 cut(s)	351, 563
Tru9I	TTAA	2 cut(s)	351, 563
TscAI	CASTG	2 cut(s)	27, 143
TseFI	GTSAC	1 cut(s)	531
TseI	GCWGC	2 cut(s)	109, 220
Tsp45I	GTSAC	1 cut(s)	531
TspDTI	ATGAA	2 cut(s)	570, 642
TspRI	CASTG	2 cut(s)	27, 143
Tth111I	GACNNNGTC	1 cut(s)	310
XceI	RCATGY	2 cut(s)	265, 541
XcmI	CCANNNNNNNNNTGG	1 cut(s)	46
XspI	CTAG	1 cut(s)	501
ZraI	GACGTC	1 cut(s)	117
Zsp2I	ATGCAT	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.