Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0009923

Physical Location & Seq

Genomic Coordinates Reverse (-)

400815 .. 402904

Gene Structure 2090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g00810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGAAGAAGATGAAAGGGGTTGTGCCTGTGGAGCCTTCTTCCTATGCTCTGTATCAGGATTCCAGGGCCAAGTTTAAGCATCAGAGTCTTATGCAAGACTATGAGGAGCTCCAGAAGGACGCAGAGGCCATGAAGAACAGATTGGAGATGATGAAGCAGAAAAAGTCTATCCTTACGGCCGAAGTCAGATTTCTAAGGAGAAGATACAAGTACTTGATTGGGAAGCAGTCCATGAACCCTAAACCGAAGCAGGACCTTGTGCAAACACACAATTTGAAAGTCCAGCGTAACAATGTTTCAAAGGGAAAGAATTACAGTAAGAAGGAATCTGCTTTGAGATATCCTGCTCCTGCAATGGATTTGAACCAAAGGGTACGAATTAAAAGTGCAATCGATGTCACCTTGCAAAAATCTACTCCAAATTCTGACTTGAACCATAAGGCAAGGAATGTCAACTGGAAGGACACTACTCTGCATAACTCAAATCCAGTTATTGGTTTGAATCAGAAGGAAAGGATTCAGAGTGGGAAGGAATCAGTCAAGCGAAAAAATACTCCAGTTTTTGACTTGAACCAAGTTTCGCTAGAGGACGAGGAGGAAATTCAAGCTAATTGTGAGCCATTGAGGACTGACGAGCCAAACAAAAGTATCCTTAGAGGGGGAATTGATGAGCAGCACAATGATATGAAGTTGCTGGTTTGCAGGACTATCGGAAATGGGTCGAACCGATCAGGAAAGAGGAAGATTACTTGGCAAGATCAGGTGGCCTTGAGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

260

Amino Acids

29.94

Weight (kDa)

9.91

Isoelectric Point (pI)

52.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57910 AT5G57910
fragaria_vesca	FvH4_1g00810
malus_domestica	MD02G1006500.v1.1 MD15G1151500.v1.1
prunus_persica	Prupe.7G264400_v2.0.a1 Prupe.7G264400_v2.0.a1
pyrus_communis	pycom02g00540 pycom15g13540
rosa_chinensis	RchiOBHm_Chr2g0085521
rosa_laevigata	RLG00000015696
rosa_multiflora	Rmu_sc0007908.1_g000005 Rmu_sc0020315.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155300
rosa_rugosa	Rorug01G0460900 Rorug01G0461000
rosa_samantha	Rh2AG009600 Rh2BG010600 Rh2CG011200 Rh2DG011900
rosa_wichuraiana	Rw2G000890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	494
AcoI	YGGCCR	1 cut(s)	177
AcsI	RAATTY	2 cut(s)	421, 600
AfaI	GTAC	2 cut(s)	212, 375
AfiI	CCNNNNNNNGG	2 cut(s)	494, 658
AgsI	TTSAA	7 cut(s)	277, 300, 364, 433, 502, 571, 605
AjnI	CCWGG	1 cut(s)	62
AjuI	GAANNNNNNNTTGG	2 cut(s)	125, 157
AluBI	AGCT	2 cut(s)	109, 608
AluI	AGCT	2 cut(s)	109, 608
Alw21I	GWGCWC	1 cut(s)	111
AoxI	GGCC	4 cut(s)	66, 126, 177, 765
ApeKI	GCWGC	1 cut(s)	673
ApoI	RAATTY	2 cut(s)	421, 600
Asp700I	GAANNNNTTC	1 cut(s)	516
AspS9I	GGNCC	2 cut(s)	66, 253
AsuHPI	GGTGA	1 cut(s)	391
AvaII	GGWCC	1 cut(s)	253
BaeI	ACNNNNGTAYC	2 cut(s)	631, 664
BanII	GRGCYC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	1 cut(s)	685
BceAI	ACGGC	1 cut(s)	192
BcgI	CGANNNNNNTGC	2 cut(s)	691, 725
BciT130I	CCWGG	1 cut(s)	64
BciVI	GTATCC	1 cut(s)	659
BfaI	CTAG	1 cut(s)	584
BfuI	GTATCC	1 cut(s)	659
BisI	GCNGC	1 cut(s)	674
BlsI	GCNGC	1 cut(s)	675
BmcAI	AGTACT	1 cut(s)	212
Bme1390I	CCNGG	1 cut(s)	64
Bme18I	GGWCC	1 cut(s)	253
BmgT120I	GGNCC	2 cut(s)	66, 253
BmiI	GGNNCC	1 cut(s)	33
BmrFI	CCNGG	1 cut(s)	64
BmsI	GCATC	1 cut(s)	88
BpmI	CTGGAG	2 cut(s)	95, 540
Bsa29I	ATCGAT	1 cut(s)	393
BsaJI	CCNNGG	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	2 cut(s)	494, 658
Bse1I	ACTGG	3 cut(s)	461, 488, 557
Bse3DI	GCAATG	1 cut(s)	360
BseBI	CCWGG	1 cut(s)	64
BseCI	ATCGAT	1 cut(s)	393
BseDI	CCNNGG	1 cut(s)	63
BseLI	CCNNNNNNNGG	2 cut(s)	494, 658
BseMI	GCAATG	1 cut(s)	360
BseNI	ACTGG	3 cut(s)	461, 488, 557
BseRI	GAGGAG	2 cut(s)	119, 608
BseX3I	CGGCCG	1 cut(s)	177
BseXI	GCAGC	1 cut(s)	685
Bsh1285I	CGRYCG	1 cut(s)	180
BshFI	GGCC	4 cut(s)	68, 128, 179, 767
BshVI	ATCGAT	1 cut(s)	393
BsiEI	CGRYCG	1 cut(s)	180
BsiHKAI	GWGCWC	1 cut(s)	111
BslI	CCNNNNNNNGG	2 cut(s)	494, 658
BsnI	GGCC	4 cut(s)	68, 128, 179, 767
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	2 cut(s)	728, 757
BspANI	GGCC	4 cut(s)	68, 128, 179, 767
BspDI	ATCGAT	1 cut(s)	393
BspLI	GGNNCC	1 cut(s)	33
BsrDI	GCAATG	1 cut(s)	360
BsrI	ACTGG	3 cut(s)	461, 488, 557
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	2 cut(s)	728, 757
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	317
BstDEI	CTNAG	2 cut(s)	194, 653
BstKTI	GATC	2 cut(s)	731, 760
BstMBI	GATC	2 cut(s)	728, 757
BstMCI	CGRYCG	1 cut(s)	180
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstNI	CCWGG	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	62
BstV1I	GCAGC	1 cut(s)	685
BstZI	CGGCCG	1 cut(s)	177
Bsu15I	ATCGAT	1 cut(s)	393
BsuI	GTATCC	1 cut(s)	659
BsuRI	GGCC	4 cut(s)	68, 128, 179, 767
BsuTUI	ATCGAT	1 cut(s)	393
Cfr13I	GGNCC	2 cut(s)	66, 253
ClaI	ATCGAT	1 cut(s)	393
CseI	GACGC	1 cut(s)	128
Csp6I	GTAC	2 cut(s)	211, 374
CviAII	CATG	2 cut(s)	130, 232
CviJI	RGCY	9 cut(s)	34, 68, 109, 128, 179, 608, 619, 637, 767
CviKI_1	RGCY	9 cut(s)	34, 68, 109, 128, 179, 608, 619, 637, 767
CviQI	GTAC	2 cut(s)	211, 374
DdeI	CTNAG	2 cut(s)	194, 653
DpnI	GATC	2 cut(s)	730, 759
DpnII	GATC	2 cut(s)	728, 757
EaeI	YGGCCR	1 cut(s)	177
EagI	CGGCCG	1 cut(s)	177
Ecl136II	GAGCTC	1 cut(s)	109
EclXI	CGGCCG	1 cut(s)	177
Eco24I	GRGCYC	1 cut(s)	111
Eco32I	GATATC	1 cut(s)	341
Eco47I	GGWCC	1 cut(s)	253
Eco52I	CGGCCG	1 cut(s)	177
Eco53kI	GAGCTC	1 cut(s)	109
EcoICRI	GAGCTC	1 cut(s)	109
EcoO109I	RGGNCCY	1 cut(s)	253
EcoRII	CCWGG	1 cut(s)	62
EcoRV	GATATC	1 cut(s)	341
EcoT38I	GRGCYC	1 cut(s)	111
FaeI	CATG	2 cut(s)	133, 235
FaiI	YATR	8 cut(s)	45, 92, 102, 131, 233, 438, 477, 686
FatI	CATG	2 cut(s)	129, 231
Fnu4HI	GCNGC	1 cut(s)	674
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	1 cut(s)	674
FspBI	CTAG	1 cut(s)	584
GluI	GCNGC	1 cut(s)	674
GsuI	CTGGAG	2 cut(s)	95, 540
HaeIII	GGCC	4 cut(s)	68, 128, 179, 767
HgaI	GACGC	1 cut(s)	128
Hin1II	CATG	2 cut(s)	133, 235
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HinfI	GANTC	6 cut(s)	59, 85, 326, 502, 517, 533
HphI	GGTGA	1 cut(s)	391
Hpy166II	GTNNAC	1 cut(s)	454
Hpy188I	TCNGA	6 cut(s)	84, 188, 427, 507, 522, 713
Hpy188III	TCNNGA	3 cut(s)	56, 112, 732
Hpy8I	GTNNAC	1 cut(s)	454
HpyAV	CCTTC	6 cut(s)	45, 109, 316, 454, 502, 523
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4V	TGCA	7 cut(s)	94, 262, 353, 389, 406, 475, 702
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpyF3I	CTNAG	2 cut(s)	194, 653
Hsp92II	CATG	2 cut(s)	133, 235
Kzo9I	GATC	2 cut(s)	728, 757
LmnI	GCTCC	4 cut(s)	31, 106, 114, 352
Lsp1109I	GCAGC	1 cut(s)	685
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	1 cut(s)	584
MaeIII	GTNAC	2 cut(s)	287, 397
MalI	GATC	2 cut(s)	730, 759
MboI	GATC	2 cut(s)	728, 757
MboII	GAAGA	6 cut(s)	16, 19, 30, 145, 213, 754
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	7 cut(s)	271, 310, 378, 421, 600, 610, 663
MlyI	GAGTC	1 cut(s)	94
MnlI	CCTC	9 cut(s)	97, 118, 580, 586, 589, 618, 650, 732, 765
MroXI	GAANNNNTTC	1 cut(s)	516
MseI	TTAA	2 cut(s)	75, 381
MspR9I	CCNGG	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	1 cut(s)	31
NdeII	GATC	2 cut(s)	728, 757
NlaIII	CATG	2 cut(s)	133, 235
NlaIV	GGNNCC	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	397
PdmI	GAANNNNTTC	1 cut(s)	516
PfeI	GAWTC	5 cut(s)	59, 326, 502, 517, 533
PflMI	CCANNNNNTGG	1 cut(s)	494
PkrI	GCNGC	1 cut(s)	675
PleI	GAGTC	1 cut(s)	93
PpsI	GAGTC	1 cut(s)	93
PpuMI	RGGWCCY	1 cut(s)	253
Psp124BI	GAGCTC	1 cut(s)	111
Psp5II	RGGWCCY	1 cut(s)	253
Psp6I	CCWGG	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	1 cut(s)	33
PspPI	GGNCC	2 cut(s)	66, 253
PspPPI	RGGWCCY	1 cut(s)	253
RsaI	GTAC	2 cut(s)	212, 375
RsaNI	GTAC	2 cut(s)	211, 374
SacI	GAGCTC	1 cut(s)	111
SaqAI	TTAA	2 cut(s)	75, 381
SatI	GCNGC	1 cut(s)	674
Sau3AI	GATC	2 cut(s)	728, 757
Sau96I	GGNCC	2 cut(s)	66, 253
ScaI	AGTACT	1 cut(s)	212
SchI	GAGTC	1 cut(s)	94
ScrFI	CCNGG	1 cut(s)	64
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	5 cut(s)	111, 258, 404, 610, 765
SfaNI	GCATC	1 cut(s)	88
SinI	GGWCC	1 cut(s)	253
SmlI	CTYRAG	1 cut(s)	769
SmoI	CTYRAG	1 cut(s)	769
Sse9I	AATT	7 cut(s)	271, 310, 378, 421, 600, 610, 663
SspMI	CTAG	1 cut(s)	584
SstI	GAGCTC	1 cut(s)	111
StyD4I	CCNGG	1 cut(s)	62
TaaI	ACNGT	1 cut(s)	317
TaqI	TCGA	2 cut(s)	393, 722
TasI	AATT	7 cut(s)	271, 310, 378, 421, 600, 610, 663
TatI	WGTACW	1 cut(s)	210
TfiI	GAWTC	5 cut(s)	59, 326, 502, 517, 533
Tru1I	TTAA	2 cut(s)	75, 381
Tru9I	TTAA	2 cut(s)	75, 381
TseFI	GTSAC	1 cut(s)	397
TseI	GCWGC	1 cut(s)	673
Tsp45I	GTSAC	1 cut(s)	397
TspDTI	ATGAA	6 cut(s)	17, 26, 146, 167, 248, 701
Van91I	CCANNNNNTGG	1 cut(s)	494
VpaK11BI	GGWCC	1 cut(s)	253
XapI	RAATTY	2 cut(s)	421, 600
XmnI	GAANNNNTTC	1 cut(s)	516
XspI	CTAG	1 cut(s)	584
ZrmI	AGTACT	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.