RchiOBHm_Chr2g0085521

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0009923
Physical Location & Seq
Reverse (-)
910265 .. 912645
2381 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46107

Sequence Viewer

Length: 780 bp
ATGAAGAAGATGAAAGGGGTTGTTGCTGTGGAGCCTTCTTCTTATGCTCTGTATCAGGATTCAAAGGCCAGGTTTAAGCATCAGAGTCTTATGCAAGACTATGAGGAGCTGCAGAAGGAAGCAGAGGCCATGAAGAACAGATTGGAGATGATGAAACAGAAAAAGTCTATCCTTACAGCTGAAGTCAGATTTTTGAGGAGAAGATACAAGTACTTGATTGGGAAGCAGTCCATGAACCCCAAACCGAAGCAAGACCTTGTGCAAACACACAATTTGAAAATCCAGCGAACCGATGTTTTGAAGGGAAAGAATTACAGTAAGAAGGAATCTGCTTTGAGACATCCTGCTCCCGCTATGGACTTGAACCAAAGGGTACGGATTAAAAATGCAATGGAAGTCGCCTTGCAAAAATCTACTCCAAATTCTGACTTGAACCATAAGGCAAGGACTGTCAGCCGGAAGGAAACTACTCTGCATAACTCAAATCCAGTTATTGACTTAAACCAGAAGGAAAAGATTCAGAGTGGGAAGGAATCAACCAAGCGAAAAAACACTCCAGTTTTTGACTTGAACCAAGTTTCGCTTGAGGAAGAGGAGGAAATTCAAGCTGATTGTGAGCCATTGAGGACAGACGAGCCAAACAAAAGTATACTTAGAGGGGGTATTGATGAGCAGCACAATGATATTAAGTTACTGGTCTGCAGGACTATCGGGAATGGGTCGAACCGATCAGGGAAGAGGAAGATTAGTTGGCAAGATCCGGTTGCCTTAAGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

259

Amino Acids

29.89

Weight (kDa)

9.82

Isoelectric Point (pI)

54.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 649
AciI CCGC 1 cut(s) 351
AclWI GGATC 1 cut(s) 752
AcsI RAATTY 2 cut(s) 421, 600
AcuI CTGAAG 1 cut(s) 201
AfaI GTAC 2 cut(s) 212, 375
AflII CTTAAG 1 cut(s) 769
AgsI TTSAA 7 cut(s) 63, 277, 301, 364, 433, 571, 605
AjnI CCWGG 1 cut(s) 68
AjuI GAANNNNNNNTTGG 2 cut(s) 125, 157
AluBI AGCT 3 cut(s) 109, 179, 608
AluI AGCT 3 cut(s) 109, 179, 608
Alw26I GTCTC 1 cut(s) 331
AlwI GGATC 1 cut(s) 752
AoxI GGCC 2 cut(s) 66, 126
ApeKI GCWGC 2 cut(s) 109, 673
ApoI RAATTY 2 cut(s) 421, 600
Asp700I GAANNNNTTC 1 cut(s) 516
BbvI GCAGC 2 cut(s) 96, 685
BcgI CGANNNNNNTGC 2 cut(s) 691, 725
BciT130I CCWGG 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 331
BfmI CTRYAG 2 cut(s) 110, 700
BfrI CTTAAG 1 cut(s) 769
BisI GCNGC 2 cut(s) 110, 674
BlsI GCNGC 2 cut(s) 111, 675
BmcAI AGTACT 1 cut(s) 212
Bme1390I CCNGG 1 cut(s) 70
BmiI GGNNCC 1 cut(s) 33
BmrFI CCNGG 1 cut(s) 70
BmsI GCATC 1 cut(s) 88
BpmI CTGGAG 1 cut(s) 540
BpuEI CTTGAG 1 cut(s) 605
BsaWI WCCGGW 1 cut(s) 760
Bse1I ACTGG 3 cut(s) 488, 557, 699
Bse3DI GCAATG 1 cut(s) 396
BseBI CCWGG 1 cut(s) 70
BseGI GGATG 1 cut(s) 340
BseMI GCAATG 1 cut(s) 396
BseNI ACTGG 3 cut(s) 488, 557, 699
BseRI GAGGAG 3 cut(s) 119, 211, 608
BseXI GCAGC 2 cut(s) 96, 685
BshFI GGCC 2 cut(s) 68, 128
BsiSI CCGG 2 cut(s) 457, 761
BsmAI GTCTC 1 cut(s) 331
BsnI GGCC 2 cut(s) 68, 128
Bsp143I GATC 2 cut(s) 728, 757
BspACI CCGC 1 cut(s) 351
BspANI GGCC 2 cut(s) 68, 128
BspLI GGNNCC 1 cut(s) 33
BspMAI CTGCAG 2 cut(s) 114, 704
BspPI GGATC 1 cut(s) 752
BspTI CTTAAG 1 cut(s) 769
BsrDI GCAATG 1 cut(s) 396
BsrI ACTGG 3 cut(s) 488, 557, 699
BssMI GATC 2 cut(s) 728, 757
BssNAI GTATAC 1 cut(s) 650
Bst1107I GTATAC 1 cut(s) 650
Bst2UI CCWGG 1 cut(s) 70
Bst4CI ACNGT 2 cut(s) 317, 451
Bst6I CTCTTC 2 cut(s) 585, 731
BstAFI CTTAAG 1 cut(s) 769
BstDEI CTNAG 1 cut(s) 653
BstF5I GGATG 1 cut(s) 340
BstKTI GATC 2 cut(s) 731, 760
BstMAI GTCTC 1 cut(s) 331
BstMBI GATC 2 cut(s) 728, 757
BstNI CCWGG 1 cut(s) 70
BstSCI CCNGG 1 cut(s) 68
BstSFI CTRYAG 2 cut(s) 110, 700
BstV1I GCAGC 2 cut(s) 96, 685
BstX2I RGATCY 1 cut(s) 757
BstYI RGATCY 1 cut(s) 757
BstZ17I GTATAC 1 cut(s) 650
BsuRI GGCC 2 cut(s) 68, 128
BtsCI GGATG 1 cut(s) 340
Csp6I GTAC 2 cut(s) 211, 374
CviAII CATG 2 cut(s) 130, 232
CviJI RGCY 9 cut(s) 34, 68, 109, 128, 179, 456, 608, 619, 637
CviKI_1 RGCY 9 cut(s) 34, 68, 109, 128, 179, 456, 608, 619, 637
CviQI GTAC 2 cut(s) 211, 374
DdeI CTNAG 1 cut(s) 653
DpnI GATC 2 cut(s) 730, 759
DpnII GATC 2 cut(s) 728, 757
Eam1104I CTCTTC 2 cut(s) 585, 731
EarI CTCTTC 2 cut(s) 585, 731
Eco57I CTGAAG 1 cut(s) 201
EcoRII CCWGG 1 cut(s) 68
FaeI CATG 2 cut(s) 133, 235
FaiI YATR 9 cut(s) 45, 92, 102, 131, 233, 356, 438, 477, 650
FalI AAGNNNNNCTT 2 cut(s) 567, 599
FatI CATG 2 cut(s) 129, 231
FauI CCCGC 1 cut(s) 358
FblI GTMKAC 1 cut(s) 649
Fnu4HI GCNGC 2 cut(s) 110, 674
FokI GGATG 1 cut(s) 327
Fsp4HI GCNGC 2 cut(s) 110, 674
GluI GCNGC 2 cut(s) 110, 674
GsuI CTGGAG 1 cut(s) 540
HaeIII GGCC 2 cut(s) 68, 128
HapII CCGG 2 cut(s) 457, 761
Hin1II CATG 2 cut(s) 133, 235
HinfI GANTC 5 cut(s) 59, 85, 326, 517, 533
HpaII CCGG 2 cut(s) 457, 761
Hpy166II GTNNAC 1 cut(s) 650
Hpy188I TCNGA 4 cut(s) 84, 188, 427, 522
Hpy188III TCNNGA 2 cut(s) 56, 712
Hpy8I GTNNAC 1 cut(s) 650
HpyAV CCTTC 7 cut(s) 45, 109, 295, 316, 454, 502, 523
HpyCH4III ACNGT 2 cut(s) 317, 451
HpyCH4V TGCA 7 cut(s) 94, 112, 262, 389, 406, 475, 702
HpyF3I CTNAG 1 cut(s) 653
Hsp92II CATG 2 cut(s) 133, 235
Kzo9I GATC 2 cut(s) 728, 757
LmnI GCTCC 3 cut(s) 31, 106, 352
Lsp1109I GCAGC 2 cut(s) 96, 685
LweI GCATC 1 cut(s) 88
MaeIII GTNAC 1 cut(s) 690
MalI GATC 2 cut(s) 730, 759
MboI GATC 2 cut(s) 728, 757
MboII GAAGA 8 cut(s) 16, 19, 30, 145, 213, 602, 748, 754
MflI RGATCY 1 cut(s) 757
MluCI AATT 4 cut(s) 271, 310, 421, 600
MlyI GAGTC 1 cut(s) 94
MnlI CCTC 9 cut(s) 97, 118, 189, 580, 586, 589, 618, 650, 732
MroXI GAANNNNTTC 1 cut(s) 516
MseI TTAA 5 cut(s) 75, 381, 500, 687, 770
MspA1I CMGCKG 1 cut(s) 179
MspCI CTTAAG 1 cut(s) 769
MspI CCGG 2 cut(s) 457, 761
MspR9I CCNGG 1 cut(s) 70
MvaI CCWGG 1 cut(s) 70
NdeII GATC 2 cut(s) 728, 757
NlaIII CATG 2 cut(s) 133, 235
NlaIV GGNNCC 1 cut(s) 33
PdmI GAANNNNTTC 1 cut(s) 516
PfeI GAWTC 4 cut(s) 59, 326, 517, 533
PkrI GCNGC 2 cut(s) 111, 675
PleI GAGTC 1 cut(s) 93
PpsI GAGTC 1 cut(s) 93
Psp6I CCWGG 1 cut(s) 68
PspGI CCWGG 1 cut(s) 68
PspN4I GGNNCC 1 cut(s) 33
PstI CTGCAG 2 cut(s) 114, 704
PsuI RGATCY 1 cut(s) 757
PvuII CAGCTG 1 cut(s) 179
RsaI GTAC 2 cut(s) 212, 375
RsaNI GTAC 2 cut(s) 211, 374
SaqAI TTAA 5 cut(s) 75, 381, 500, 687, 770
SatI GCNGC 2 cut(s) 110, 674
Sau3AI GATC 2 cut(s) 728, 757
ScaI AGTACT 1 cut(s) 212
SchI GAGTC 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 70
SetI ASST 5 cut(s) 74, 111, 181, 258, 610
SfaNI GCATC 1 cut(s) 88
SfcI CTRYAG 2 cut(s) 110, 700
SmlI CTYRAG 2 cut(s) 584, 769
SmoI CTYRAG 2 cut(s) 584, 769
Sse9I AATT 4 cut(s) 271, 310, 421, 600
SsiI CCGC 1 cut(s) 351
StyD4I CCNGG 1 cut(s) 68
TaaI ACNGT 2 cut(s) 317, 451
TaqI TCGA 1 cut(s) 722
TasI AATT 4 cut(s) 271, 310, 421, 600
TatI WGTACW 1 cut(s) 210
TfiI GAWTC 4 cut(s) 59, 326, 517, 533
Tru1I TTAA 5 cut(s) 75, 381, 500, 687, 770
Tru9I TTAA 5 cut(s) 75, 381, 500, 687, 770
TseI GCWGC 2 cut(s) 109, 673
TspDTI ATGAA 5 cut(s) 17, 26, 146, 167, 248
TspGWI ACGGA 1 cut(s) 391
Vha464I CTTAAG 1 cut(s) 769
XapI RAATTY 2 cut(s) 421, 600
XmiI GTMKAC 1 cut(s) 649
XmnI GAANNNNTTC 1 cut(s) 516
ZrmI AGTACT 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.