Rw2G000890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0009923
Physical Location & Seq
Reverse (-)
738875 .. 741334
2460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G000890.1

Sequence Viewer

Length: 594 bp
ATGAAGAAGATGAAAGGGGTTGTTGCTGTGGAGCCTTCTTCTTATGCTCTGTATCAGGATTCAAAGGCCAGGTTTAAGCATCACAGTCTTATGCAAGACTATGAGGAGCTGCAGAAGGAAGCAGAGGCCATGAAGAACAGATTGGAGATGATGAAACAGAAAAAGTCTATCCTTACAGCTGAAGTCAGATTTTTGAGGAGAAGATACAAGTACTTGATTGGGAAGCAGTCCATGAACCCCAAACCGAAGCAAGACCTTGTGCAAACACACAATTTGAAAATCCAGCGAACCGATGTTTTGAAGGGAAAGAATCACAGTAAGAAGGAATCTGCTTTGAGACATCCTGCTCCTGCAATGGACTTGAACCAAAGGGTACGGATTAAAAATGCAATGGAAGTCGCCTTGCAAAAATCTACTCCAAATTCTGACTTGAACCATAAGGCAAGGACTGTCAGCCGGAAGGAAACTACTCTGCGCAACTCAAATCCAGTTATTGACTTAAATCAGAAGGAAAAGATTCAGAGTGGGAAGGAATCAACCAAGCGAAAAAACACTCCAGTTTTTGACTTGAACCAAGTTTCGGTAAACACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

22.85

Weight (kDa)

10.23

Isoelectric Point (pI)

46.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 476
AcsI RAATTY 1 cut(s) 421
AcuI CTGAAG 1 cut(s) 201
AfaI GTAC 2 cut(s) 212, 375
AfiI CCNNNNNNNGG 1 cut(s) 580
AgsI TTSAA 6 cut(s) 63, 277, 301, 364, 433, 571
AjnI CCWGG 1 cut(s) 68
AjuI GAANNNNNNNTTGG 2 cut(s) 125, 157
AluBI AGCT 2 cut(s) 109, 179
AluI AGCT 2 cut(s) 109, 179
Alw26I GTCTC 1 cut(s) 331
AoxI GGCC 2 cut(s) 66, 126
ApeKI GCWGC 1 cut(s) 109
ApoI RAATTY 1 cut(s) 421
Asp700I GAANNNNTTC 1 cut(s) 516
AspLEI GCGC 1 cut(s) 477
BbvI GCAGC 1 cut(s) 96
BciT130I CCWGG 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 331
BfmI CTRYAG 1 cut(s) 110
BisI GCNGC 1 cut(s) 110
BlsI GCNGC 1 cut(s) 111
BmcAI AGTACT 1 cut(s) 212
Bme1390I CCNGG 1 cut(s) 70
BmiI GGNNCC 1 cut(s) 33
BmrFI CCNGG 1 cut(s) 70
BmsI GCATC 1 cut(s) 88
BpmI CTGGAG 1 cut(s) 540
Bsc4I CCNNNNNNNGG 1 cut(s) 580
Bse1I ACTGG 2 cut(s) 488, 557
Bse3DI GCAATG 2 cut(s) 360, 396
BseBI CCWGG 1 cut(s) 70
BseGI GGATG 1 cut(s) 340
BseLI CCNNNNNNNGG 1 cut(s) 580
BseMI GCAATG 2 cut(s) 360, 396
BseNI ACTGG 2 cut(s) 488, 557
BseRI GAGGAG 2 cut(s) 119, 211
BseXI GCAGC 1 cut(s) 96
BshFI GGCC 2 cut(s) 68, 128
BsiSI CCGG 1 cut(s) 457
BslI CCNNNNNNNGG 1 cut(s) 580
BsmAI GTCTC 1 cut(s) 331
BsnI GGCC 2 cut(s) 68, 128
BspANI GGCC 2 cut(s) 68, 128
BspLI GGNNCC 1 cut(s) 33
BspMAI CTGCAG 1 cut(s) 114
BsrDI GCAATG 2 cut(s) 360, 396
BsrI ACTGG 2 cut(s) 488, 557
Bst2UI CCWGG 1 cut(s) 70
Bst4CI ACNGT 3 cut(s) 86, 317, 451
BstF5I GGATG 1 cut(s) 340
BstHHI GCGC 1 cut(s) 477
BstMAI GTCTC 1 cut(s) 331
BstNI CCWGG 1 cut(s) 70
BstSCI CCNGG 1 cut(s) 68
BstSFI CTRYAG 1 cut(s) 110
BstV1I GCAGC 1 cut(s) 96
BsuRI GGCC 2 cut(s) 68, 128
BtsCI GGATG 1 cut(s) 340
CfoI GCGC 1 cut(s) 477
Csp6I GTAC 2 cut(s) 211, 374
CviAII CATG 2 cut(s) 130, 232
CviJI RGCY 6 cut(s) 34, 68, 109, 128, 179, 456
CviKI_1 RGCY 6 cut(s) 34, 68, 109, 128, 179, 456
CviQI GTAC 2 cut(s) 211, 374
Eco57I CTGAAG 1 cut(s) 201
EcoRII CCWGG 1 cut(s) 68
FaeI CATG 2 cut(s) 133, 235
FaiI YATR 7 cut(s) 45, 92, 102, 131, 233, 438, 592
FatI CATG 2 cut(s) 129, 231
Fnu4HI GCNGC 1 cut(s) 110
FokI GGATG 1 cut(s) 327
Fsp4HI GCNGC 1 cut(s) 110
FspI TGCGCA 1 cut(s) 476
GlaI GCGC 1 cut(s) 476
GluI GCNGC 1 cut(s) 110
GsuI CTGGAG 1 cut(s) 540
HaeIII GGCC 2 cut(s) 68, 128
HapII CCGG 1 cut(s) 457
HhaI GCGC 1 cut(s) 477
Hin1II CATG 2 cut(s) 133, 235
Hin6I GCGC 1 cut(s) 475
HinP1I GCGC 1 cut(s) 475
HinfI GANTC 5 cut(s) 59, 310, 326, 517, 533
HpaII CCGG 1 cut(s) 457
Hpy166II GTNNAC 1 cut(s) 586
Hpy188I TCNGA 4 cut(s) 188, 427, 507, 522
Hpy188III TCNNGA 1 cut(s) 56
Hpy8I GTNNAC 1 cut(s) 586
HpyAV CCTTC 7 cut(s) 45, 109, 295, 316, 454, 502, 523
HpyCH4III ACNGT 3 cut(s) 86, 317, 451
HpyCH4V TGCA 6 cut(s) 94, 112, 262, 353, 389, 406
Hsp92II CATG 2 cut(s) 133, 235
HspAI GCGC 1 cut(s) 475
LmnI GCTCC 3 cut(s) 31, 106, 352
LpnPI CCDG 9 cut(s) 41, 55, 82, 296, 357, 363, 470, 501, 570
Lsp1109I GCAGC 1 cut(s) 96
LweI GCATC 1 cut(s) 88
MboII GAAGA 5 cut(s) 16, 19, 30, 145, 213
MluCI AATT 2 cut(s) 271, 421
MnlI CCTC 3 cut(s) 97, 118, 189
MroXI GAANNNNTTC 1 cut(s) 516
MseI TTAA 3 cut(s) 75, 381, 500
MspA1I CMGCKG 1 cut(s) 179
MspI CCGG 1 cut(s) 457
MspR9I CCNGG 1 cut(s) 70
MvaI CCWGG 1 cut(s) 70
NlaIII CATG 2 cut(s) 133, 235
NlaIV GGNNCC 1 cut(s) 33
NsbI TGCGCA 1 cut(s) 476
PdmI GAANNNNTTC 1 cut(s) 516
PfeI GAWTC 5 cut(s) 59, 310, 326, 517, 533
PkrI GCNGC 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 68
PspGI CCWGG 1 cut(s) 68
PspN4I GGNNCC 1 cut(s) 33
PstI CTGCAG 1 cut(s) 114
PvuII CAGCTG 1 cut(s) 179
RsaI GTAC 2 cut(s) 212, 375
RsaNI GTAC 2 cut(s) 211, 374
SaqAI TTAA 3 cut(s) 75, 381, 500
SatI GCNGC 1 cut(s) 110
ScaI AGTACT 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 70
SetI ASST 4 cut(s) 74, 111, 181, 258
SfaNI GCATC 1 cut(s) 88
SfcI CTRYAG 1 cut(s) 110
Sse9I AATT 2 cut(s) 271, 421
StyD4I CCNGG 1 cut(s) 68
TaaI ACNGT 3 cut(s) 86, 317, 451
TasI AATT 2 cut(s) 271, 421
TatI WGTACW 1 cut(s) 210
TfiI GAWTC 5 cut(s) 59, 310, 326, 517, 533
Tru1I TTAA 3 cut(s) 75, 381, 500
Tru9I TTAA 3 cut(s) 75, 381, 500
TseI GCWGC 1 cut(s) 109
TspDTI ATGAA 5 cut(s) 17, 26, 146, 167, 248
TspGWI ACGGA 1 cut(s) 391
XapI RAATTY 1 cut(s) 421
XmnI GAANNNNTTC 1 cut(s) 516
ZrmI AGTACT 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.