Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0009923

Physical Location & Seq

Genomic Coordinates Reverse (-)

11146923 .. 11149517

Gene Structure 2595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1151500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGAAGAAGATGAAAGGGGTTGTTTCTGATGCTATGGAGGACCAGAGGACCAGGTTCAAGCACCAGAGTCTCATGCAGGACTATGAGGAGCTGCAGAAGGATGCAGATGCTACGAAGAAAAAATTGCAGATAATGAAACAGAAAAAGTCTACGCTCGTAGCCGAAGTAAGGTTTTTGAGGAGAAGATATAAATACTTAATGGGGAACCCGTCAATGAACCCTCGACCAAAGCAAGATGTTGTGCAAACACACAACTTAGAATCCCAGCGCGTCACCTATTTGAAGGGAAAGAGTTCCAGTAAGAAGGAATCTGCTTCGCGGTACCCTCTTCCTGCATTAGACTTGAACAAAAAGGAAAAGGTTAAACATGGAATGGAAGACATCGTGCGGAAACCTCCTCCAAAATTTGGATTAAACCTTAATGCAAGGGCACTTGGCGGAAAGGAAGCTACTTTGCGAACCCCCACTCCAAACTTTGACTTAAATCAGAAGGAAAGGGTTCAGAGTGGGAAGGAATCGACAAAGCGAAAGAACACTCCAGTTTTTGACTTGAACCAGATTTCGAGAGAGGAGGAGGAGGAATTTCAAGCCAATTATGAGCCAATGAGGATAGAGGAGCCCAACAAAAGTTTACGCAGAGGGGGAAATGATGAGCAGCACAATGACATGAAGTTGCTGGCTTGCAGGACTATAGGGAGCGGGTCAAACCGATCGGGGAAGAGGAAGATTACTTGGCAAGATCAGGTGGCTTTACGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

254

Amino Acids

29.3

Weight (kDa)

9.99

Isoelectric Point (pI)

56.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57910 AT5G57910
fragaria_vesca	FvH4_1g00810
malus_domestica	MD02G1006500.v1.1 MD15G1151500.v1.1
prunus_persica	Prupe.7G264400_v2.0.a1 Prupe.7G264400_v2.0.a1
pyrus_communis	pycom02g00540 pycom15g13540
rosa_chinensis	RchiOBHm_Chr2g0085521
rosa_laevigata	RLG00000015696
rosa_multiflora	Rmu_sc0007908.1_g000005 Rmu_sc0020315.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155300
rosa_rugosa	Rorug01G0460900 Rorug01G0461000
rosa_samantha	Rh2AG009600 Rh2BG010600 Rh2CG011200 Rh2DG011900
rosa_wichuraiana	Rw2G000890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	321
AccB1I	GGYRCC	1 cut(s)	321
AccB7I	CCANNNNNTGG	1 cut(s)	407
AccBSI	CCGCTC	1 cut(s)	699
AccI	GTMKAC	1 cut(s)	149
AccII	CGCG	2 cut(s)	270, 319
AciI	CCGC	4 cut(s)	319, 388, 438, 699
AcsI	RAATTY	2 cut(s)	404, 581
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	2 cut(s)	168, 407
AgsI	TTSAA	5 cut(s)	58, 283, 346, 553, 587
AjnI	CCWGG	1 cut(s)	50
AloI	GAACNNNNNNTCC	2 cut(s)	451, 483
AluBI	AGCT	2 cut(s)	91, 449
AluI	AGCT	2 cut(s)	91, 449
Alw26I	GTCTC	1 cut(s)	74
ApeKI	GCWGC	2 cut(s)	91, 655
ApoI	RAATTY	2 cut(s)	404, 581
Asp700I	GAANNNNTTC	2 cut(s)	292, 498
Asp718I	GGTACC	1 cut(s)	321
AspLEI	GCGC	1 cut(s)	270
AspS9I	GGNCC	2 cut(s)	40, 48
AsuHPI	GGTGA	1 cut(s)	265
AvaII	GGWCC	2 cut(s)	40, 48
BaeGI	GKGCMC	1 cut(s)	433
BanI	GGYRCC	1 cut(s)	321
BanII	GRGCYC	1 cut(s)	621
BbsI	GAAGAC	1 cut(s)	384
BbvI	GCAGC	2 cut(s)	78, 667
BciT130I	CCWGG	1 cut(s)	52
BcoDI	GTCTC	1 cut(s)	74
BfmI	CTRYAG	2 cut(s)	92, 690
BisI	GCNGC	2 cut(s)	92, 656
BlsI	GCNGC	2 cut(s)	93, 657
Bme1390I	CCNGG	1 cut(s)	52
Bme18I	GGWCC	2 cut(s)	40, 48
BmgT120I	GGNCC	2 cut(s)	40, 48
BmiI	GGNNCC	3 cut(s)	206, 323, 618
BmrFI	CCNGG	1 cut(s)	52
BmsI	GCATC	3 cut(s)	19, 91, 97
BpiI	GAAGAC	1 cut(s)	384
BpmI	CTGGAG	1 cut(s)	522
BsaXI	ACNNNNNCTCC	2 cut(s)	451, 481
Bsc4I	CCNNNNNNNGG	2 cut(s)	168, 407
Bse1I	ACTGG	2 cut(s)	297, 539
BseBI	CCWGG	1 cut(s)	52
BseGI	GGATG	1 cut(s)	106
BseLI	CCNNNNNNNGG	2 cut(s)	168, 407
BseNI	ACTGG	2 cut(s)	297, 539
BseRI	GAGGAG	7 cut(s)	101, 193, 387, 584, 587, 590, 629
BseSI	GKGCMC	1 cut(s)	433
BseXI	GCAGC	2 cut(s)	78, 667
BseYI	CCCAGC	1 cut(s)	264
Bsh1236I	CGCG	2 cut(s)	270, 319
Bsh1285I	CGRYCG	1 cut(s)	713
BshNI	GGYRCC	1 cut(s)	321
BsiEI	CGRYCG	1 cut(s)	713
BslI	CCNNNNNNNGG	2 cut(s)	168, 407
BsmAI	GTCTC	1 cut(s)	74
Bsp1286I	GDGCHC	2 cut(s)	433, 621
Bsp143I	GATC	2 cut(s)	710, 739
BspACI	CCGC	4 cut(s)	319, 388, 438, 699
BspFNI	CGCG	2 cut(s)	270, 319
BspLI	GGNNCC	3 cut(s)	206, 323, 618
BspMAI	CTGCAG	1 cut(s)	96
BspT107I	GGYRCC	1 cut(s)	321
BsrBI	CCGCTC	1 cut(s)	699
BsrI	ACTGG	2 cut(s)	297, 539
BssMI	GATC	2 cut(s)	710, 739
Bst2UI	CCWGG	1 cut(s)	52
Bst6I	CTCTTC	2 cut(s)	333, 713
BstC8I	GCNNGC	2 cut(s)	678, 682
BstDEI	CTNAG	1 cut(s)	256
BstF5I	GGATG	1 cut(s)	106
BstFNI	CGCG	2 cut(s)	270, 319
BstHHI	GCGC	1 cut(s)	270
BstKTI	GATC	2 cut(s)	713, 742
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	2 cut(s)	710, 739
BstMCI	CGRYCG	1 cut(s)	713
BstNI	CCWGG	1 cut(s)	52
BstSCI	CCNGG	1 cut(s)	50
BstSFI	CTRYAG	2 cut(s)	92, 690
BstSLI	GKGCMC	1 cut(s)	433
BstUI	CGCG	2 cut(s)	270, 319
BstV1I	GCAGC	2 cut(s)	78, 667
BstV2I	GAAGAC	1 cut(s)	384
BtsCI	GGATG	1 cut(s)	106
Cac8I	GCNNGC	2 cut(s)	678, 682
CfoI	GCGC	1 cut(s)	270
Cfr13I	GGNCC	2 cut(s)	40, 48
CseI	GACGC	1 cut(s)	259
CsiI	ACCWGGT	1 cut(s)	50
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	3 cut(s)	73, 368, 667
CviJI	RGCY	8 cut(s)	91, 161, 449, 590, 601, 619, 680, 749
CviKI_1	RGCY	8 cut(s)	91, 161, 449, 590, 601, 619, 680, 749
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	1 cut(s)	256
DpnI	GATC	2 cut(s)	712, 741
DpnII	GATC	2 cut(s)	710, 739
Eam1104I	CTCTTC	2 cut(s)	333, 713
EarI	CTCTTC	2 cut(s)	333, 713
EciI	GGCGGA	1 cut(s)	453
Eco24I	GRGCYC	1 cut(s)	621
Eco47I	GGWCC	2 cut(s)	40, 48
EcoRII	CCWGG	1 cut(s)	50
EcoT38I	GRGCYC	1 cut(s)	621
FaeI	CATG	3 cut(s)	76, 371, 670
FaiI	YATR	8 cut(s)	35, 74, 84, 189, 369, 597, 668, 692
FatI	CATG	3 cut(s)	72, 367, 666
FauI	CCCGC	1 cut(s)	692
FblI	GTMKAC	1 cut(s)	149
Fnu4HI	GCNGC	2 cut(s)	92, 656
FokI	GGATG	1 cut(s)	113
FriOI	GRGCYC	1 cut(s)	621
Fsp4HI	GCNGC	2 cut(s)	92, 656
GlaI	GCGC	1 cut(s)	269
GluI	GCNGC	2 cut(s)	92, 656
GsaI	CCCAGC	1 cut(s)	268
GsuI	CTGGAG	1 cut(s)	522
HgaI	GACGC	1 cut(s)	259
HhaI	GCGC	1 cut(s)	270
Hin1II	CATG	3 cut(s)	76, 371, 670
Hin6I	GCGC	1 cut(s)	268
HinP1I	GCGC	1 cut(s)	268
HinfI	GANTC	4 cut(s)	67, 260, 308, 515
HphI	GGTGA	1 cut(s)	265
Hpy166II	GTNNAC	2 cut(s)	150, 632
Hpy188I	TCNGA	3 cut(s)	28, 489, 504
Hpy188III	TCNNGA	1 cut(s)	564
Hpy8I	GTNNAC	2 cut(s)	150, 632
HpyAV	CCTTC	5 cut(s)	91, 277, 298, 484, 505
HpyCH4V	TGCA	8 cut(s)	76, 94, 104, 127, 244, 335, 425, 684
HpyF3I	CTNAG	1 cut(s)	256
Hsp92II	CATG	3 cut(s)	76, 371, 670
HspAI	GCGC	1 cut(s)	268
KpnI	GGTACC	1 cut(s)	325
Kzo9I	GATC	2 cut(s)	710, 739
LmnI	GCTCC	3 cut(s)	88, 616, 696
Lsp1109I	GCAGC	2 cut(s)	78, 667
LweI	GCATC	3 cut(s)	19, 91, 97
MabI	ACCWGGT	1 cut(s)	50
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	2 cut(s)	712, 741
MbiI	CCGCTC	1 cut(s)	699
MboI	GATC	2 cut(s)	710, 739
MboII	GAAGA	8 cut(s)	16, 19, 127, 195, 320, 389, 730, 736
MhlI	GDGCHC	2 cut(s)	433, 621
MluCI	AATT	4 cut(s)	122, 404, 581, 592
MlyI	GAGTC	1 cut(s)	76
MroXI	GAANNNNTTC	2 cut(s)	292, 498
MseI	TTAA	5 cut(s)	197, 363, 413, 420, 482
MspR9I	CCNGG	1 cut(s)	52
MvaI	CCWGG	1 cut(s)	52
MvnI	CGCG	2 cut(s)	270, 319
NdeII	GATC	2 cut(s)	710, 739
NlaIII	CATG	3 cut(s)	76, 371, 670
NlaIV	GGNNCC	3 cut(s)	206, 323, 618
NmuCI	GTSAC	1 cut(s)	271
PdmI	GAANNNNTTC	2 cut(s)	292, 498
PfeI	GAWTC	3 cut(s)	260, 308, 515
PflMI	CCANNNNNTGG	1 cut(s)	407
PkrI	GCNGC	2 cut(s)	93, 657
Ple19I	CGATCG	1 cut(s)	713
PleI	GAGTC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	75
Psp6I	CCWGG	1 cut(s)	50
PspFI	CCCAGC	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	50
PspN4I	GGNNCC	3 cut(s)	206, 323, 618
PspPI	GGNCC	2 cut(s)	40, 48
PstI	CTGCAG	1 cut(s)	96
PvuI	CGATCG	1 cut(s)	713
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
SaqAI	TTAA	5 cut(s)	197, 363, 413, 420, 482
SatI	GCNGC	2 cut(s)	92, 656
Sau3AI	GATC	2 cut(s)	710, 739
Sau96I	GGNCC	2 cut(s)	40, 48
SchI	GAGTC	1 cut(s)	76
ScrFI	CCNGG	1 cut(s)	52
SduI	GDGCHC	2 cut(s)	433, 621
SetI	ASST	9 cut(s)	56, 93, 173, 278, 363, 397, 420, 451, 747
SexAI	ACCWGGT	1 cut(s)	50
SfaNI	GCATC	3 cut(s)	19, 91, 97
SfcI	CTRYAG	2 cut(s)	92, 690
SinI	GGWCC	2 cut(s)	40, 48
Sse9I	AATT	4 cut(s)	122, 404, 581, 592
SsiI	CCGC	4 cut(s)	319, 388, 438, 699
StyD4I	CCNGG	1 cut(s)	50
TaqI	TCGA	3 cut(s)	223, 518, 563
TasI	AATT	4 cut(s)	122, 404, 581, 592
TfiI	GAWTC	3 cut(s)	260, 308, 515
Tru1I	TTAA	5 cut(s)	197, 363, 413, 420, 482
Tru9I	TTAA	5 cut(s)	197, 363, 413, 420, 482
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	2 cut(s)	91, 655
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	5 cut(s)	17, 26, 149, 230, 683
Van91I	CCANNNNNTGG	1 cut(s)	407
VpaK11BI	GGWCC	2 cut(s)	40, 48
XapI	RAATTY	2 cut(s)	404, 581
XmiI	GTMKAC	1 cut(s)	149
XmnI	GAANNNNTTC	2 cut(s)	292, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.