Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0009923

Physical Location & Seq

Genomic Coordinates Reverse (-)

767575 .. 770689

Gene Structure 3115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015696

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGGAAATTGGGCCATCTGGTATTGGATCTCATTAACTTCTGTGGGTGGCGCCAACATCACTAACAGAGGAAAAGGCGCATGCCATCACCAACTGTTACTGGCTGGGATGGAAACGATTGAGTGGGAGAGGGGGATTAGATCGTCCTCGGAATCAAAGAAAAACCAGGGGAGGATGGGGGAAGCAGAGGCCATGAAGAACAGATTGGAGATGATGAAACAGAAAAAGTCTATCCTTACAGCTGAAGTCAGATTTTTGAGGAGAAGATACAAGTACTTGATTGGGAAGCAGTCCATGAACCCCAAACCGAAGCAAGACCTTGTGCAAACACACAATTTGAAAATCCAGCGAACCGATGTTTTGAAGGGAAAGAATTACAGTAAGAAGGAATCTGCTTTGAGACATCCTGCTCCTGCAATGGACTTGAACCAAAGGGTACGGATTAAAAATGCAATGGAAGTCGCCTTGCAAAAATCTACTCCAAATTCTGACTTGAACCATAAGGCAAGGACTGTCAGCCGGAAGGAAACTACTCTGCATAACTCAAATCCAGTTATTGACTTGAATCAGAAGGAAAGGATTCAGAGTGGGAAGGAATCAACCAAGCGAAAAAACACTCCAGTTTTTGACTTGAACCAAGTTTCGCTAGAGGAAGAGGAGGAAACTCAAGCTGATTGTGAGCCATTGAGGACAGACGAGCCAAACAAAAGTATACTTAGAGGGGGTATTGATGAGCAGCACAATGATATGAAGTTGCTGGTTTGCAGGACTATCGGGAATGGGTCGAACCGATCAGGGAAGAGGAAGATTACTTGGCAAGATCCGGTTGCCTTAAGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

281

Amino Acids

32.02

Weight (kDa)

9.95

Isoelectric Point (pI)

46.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57910 AT5G57910
fragaria_vesca	FvH4_1g00810
malus_domestica	MD02G1006500.v1.1 MD15G1151500.v1.1
prunus_persica	Prupe.7G264400_v2.0.a1 Prupe.7G264400_v2.0.a1
pyrus_communis	pycom02g00540 pycom15g13540
rosa_chinensis	RchiOBHm_Chr2g0085521
rosa_laevigata	RLG00000015696
rosa_multiflora	Rmu_sc0007908.1_g000005 Rmu_sc0020315.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155300
rosa_rugosa	Rorug01G0460900 Rorug01G0461000
rosa_samantha	Rh2AG009600 Rh2BG010600 Rh2CG011200 Rh2DG011900
rosa_wichuraiana	Rw2G000890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	50
AccI	GTMKAC	1 cut(s)	712
AclWI	GGATC	2 cut(s)	35, 815
AcsI	RAATTY	1 cut(s)	484
AcuI	CTGAAG	1 cut(s)	264
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	2 cut(s)	275, 438
AflII	CTTAAG	1 cut(s)	832
AgsI	TTSAA	6 cut(s)	340, 364, 427, 496, 565, 634
AjnI	CCWGG	1 cut(s)	165
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
AluBI	AGCT	2 cut(s)	242, 671
AluI	AGCT	2 cut(s)	242, 671
Alw26I	GTCTC	1 cut(s)	394
AlwI	GGATC	2 cut(s)	35, 815
AoxI	GGCC	2 cut(s)	12, 189
ApeKI	GCWGC	1 cut(s)	736
ApoI	RAATTY	1 cut(s)	484
Asp700I	GAANNNNTTC	1 cut(s)	579
AspLEI	GCGC	2 cut(s)	53, 80
AspS9I	GGNCC	1 cut(s)	12
AsuHPI	GGTGA	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	50
BbvI	GCAGC	1 cut(s)	748
BccI	CCATC	4 cut(s)	23, 93, 103, 169
BcgI	CGANNNNNNTGC	2 cut(s)	754, 788
BciT130I	CCWGG	1 cut(s)	167
BcoDI	GTCTC	1 cut(s)	394
BfaI	CTAG	1 cut(s)	647
BfoI	RGCGCY	1 cut(s)	54
BfrI	CTTAAG	1 cut(s)	832
BisI	GCNGC	1 cut(s)	737
BlsI	GCNGC	1 cut(s)	738
BmcAI	AGTACT	1 cut(s)	275
Bme1390I	CCNGG	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	12
BmiI	GGNNCC	1 cut(s)	52
BmrFI	CCNGG	1 cut(s)	167
BpmI	CTGGAG	1 cut(s)	603
BpuEI	CTTGAG	1 cut(s)	651
BsaHI	GRCGYC	1 cut(s)	51
BsaJI	CCNNGG	2 cut(s)	147, 166
BsaWI	WCCGGW	1 cut(s)	823
Bse1I	ACTGG	3 cut(s)	105, 551, 620
Bse3DI	GCAATG	2 cut(s)	423, 459
BseBI	CCWGG	1 cut(s)	167
BseDI	CCNNGG	2 cut(s)	147, 166
BseGI	GGATG	3 cut(s)	114, 180, 403
BseMI	GCAATG	2 cut(s)	423, 459
BseNI	ACTGG	3 cut(s)	105, 551, 620
BseRI	GAGGAG	2 cut(s)	274, 671
BseXI	GCAGC	1 cut(s)	748
BseYI	CCCAGC	1 cut(s)	104
BshFI	GGCC	2 cut(s)	14, 191
BshNI	GGYRCC	1 cut(s)	50
BsiSI	CCGG	2 cut(s)	520, 824
BsmAI	GTCTC	1 cut(s)	394
BsnI	GGCC	2 cut(s)	14, 191
Bsp143I	GATC	4 cut(s)	27, 140, 791, 820
BspANI	GGCC	2 cut(s)	14, 191
BspLI	GGNNCC	1 cut(s)	52
BspPI	GGATC	2 cut(s)	35, 815
BspT107I	GGYRCC	1 cut(s)	50
BspTI	CTTAAG	1 cut(s)	832
BsrDI	GCAATG	2 cut(s)	423, 459
BsrI	ACTGG	3 cut(s)	105, 551, 620
BssECI	CCNNGG	2 cut(s)	147, 166
BssMI	GATC	4 cut(s)	27, 140, 791, 820
BssNAI	GTATAC	1 cut(s)	713
BssNI	GRCGYC	1 cut(s)	51
Bst1107I	GTATAC	1 cut(s)	713
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	3 cut(s)	96, 380, 514
Bst6I	CTCTTC	2 cut(s)	648, 794
BstACI	GRCGYC	1 cut(s)	51
BstAFI	CTTAAG	1 cut(s)	832
BstC8I	GCNNGC	1 cut(s)	82
BstDEI	CTNAG	1 cut(s)	716
BstF5I	GGATG	3 cut(s)	114, 180, 403
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	2 cut(s)	53, 80
BstKTI	GATC	4 cut(s)	30, 143, 794, 823
BstMAI	GTCTC	1 cut(s)	394
BstMBI	GATC	4 cut(s)	27, 140, 791, 820
BstNI	CCWGG	1 cut(s)	167
BstNSI	RCATGY	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	165
BstV1I	GCAGC	1 cut(s)	748
BstX2I	RGATCY	2 cut(s)	27, 820
BstYI	RGATCY	2 cut(s)	27, 820
BstZ17I	GTATAC	1 cut(s)	713
BsuRI	GGCC	2 cut(s)	14, 191
BtsCI	GGATG	3 cut(s)	114, 180, 403
Cac8I	GCNNGC	1 cut(s)	82
CfoI	GCGC	2 cut(s)	53, 80
Cfr13I	GGNCC	1 cut(s)	12
Csp6I	GTAC	2 cut(s)	274, 437
CviAII	CATG	3 cut(s)	81, 193, 295
CviJI	RGCY	8 cut(s)	14, 104, 191, 242, 519, 671, 682, 700
CviKI_1	RGCY	8 cut(s)	14, 104, 191, 242, 519, 671, 682, 700
CviQI	GTAC	2 cut(s)	274, 437
DdeI	CTNAG	1 cut(s)	716
DinI	GGCGCC	1 cut(s)	52
DpnI	GATC	4 cut(s)	29, 142, 793, 822
DpnII	GATC	4 cut(s)	27, 140, 791, 820
Eam1104I	CTCTTC	2 cut(s)	648, 794
EarI	CTCTTC	2 cut(s)	648, 794
Eco57I	CTGAAG	1 cut(s)	264
EcoRII	CCWGG	1 cut(s)	165
EgeI	GGCGCC	1 cut(s)	52
EheI	GGCGCC	1 cut(s)	52
FaeI	CATG	3 cut(s)	84, 196, 298
FaiI	YATR	7 cut(s)	82, 194, 296, 501, 540, 713, 749
FatI	CATG	3 cut(s)	80, 192, 294
FblI	GTMKAC	1 cut(s)	712
Fnu4HI	GCNGC	1 cut(s)	737
FokI	GGATG	3 cut(s)	121, 187, 390
Fsp4HI	GCNGC	1 cut(s)	737
FspBI	CTAG	1 cut(s)	647
GlaI	GCGC	2 cut(s)	52, 79
GluI	GCNGC	1 cut(s)	737
GsaI	CCCAGC	1 cut(s)	108
GsuI	CTGGAG	1 cut(s)	603
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	2 cut(s)	14, 191
HapII	CCGG	2 cut(s)	520, 824
HhaI	GCGC	2 cut(s)	53, 80
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	3 cut(s)	84, 196, 298
Hin6I	GCGC	2 cut(s)	51, 78
HinP1I	GCGC	2 cut(s)	51, 78
HinfI	GANTC	5 cut(s)	152, 389, 565, 580, 596
HpaII	CCGG	2 cut(s)	520, 824
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	1 cut(s)	713
Hpy188I	TCNGA	5 cut(s)	151, 251, 490, 570, 585
Hpy188III	TCNNGA	1 cut(s)	775
Hpy8I	GTNNAC	1 cut(s)	713
HpyAV	CCTTC	5 cut(s)	358, 379, 517, 565, 586
HpyCH4III	ACNGT	3 cut(s)	96, 380, 514
HpyCH4V	TGCA	6 cut(s)	325, 416, 452, 469, 538, 765
HpyF3I	CTNAG	1 cut(s)	716
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	3 cut(s)	84, 196, 298
HspAI	GCGC	2 cut(s)	51, 78
KasI	GGCGCC	1 cut(s)	50
Kzo9I	GATC	4 cut(s)	27, 140, 791, 820
LmnI	GCTCC	1 cut(s)	415
Lsp1109I	GCAGC	1 cut(s)	748
MaeI	CTAG	1 cut(s)	647
MaeIII	GTNAC	1 cut(s)	96
MalI	GATC	4 cut(s)	29, 142, 793, 822
MboI	GATC	4 cut(s)	27, 140, 791, 820
MboII	GAAGA	5 cut(s)	208, 276, 665, 811, 817
MflI	RGATCY	2 cut(s)	27, 820
MluCI	AATT	4 cut(s)	7, 334, 373, 484
Mly113I	GGCGCC	1 cut(s)	51
MroXI	GAANNNNTTC	1 cut(s)	579
MseI	TTAA	3 cut(s)	35, 444, 833
MspA1I	CMGCKG	1 cut(s)	242
MspCI	CTTAAG	1 cut(s)	832
MspI	CCGG	2 cut(s)	520, 824
MspR9I	CCNGG	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	167
NarI	GGCGCC	1 cut(s)	51
NdeII	GATC	4 cut(s)	27, 140, 791, 820
NlaIII	CATG	3 cut(s)	84, 196, 298
NlaIV	GGNNCC	1 cut(s)	52
NspI	RCATGY	1 cut(s)	84
PaeI	GCATGC	1 cut(s)	84
PdmI	GAANNNNTTC	1 cut(s)	579
PfeI	GAWTC	5 cut(s)	152, 389, 565, 580, 596
PkrI	GCNGC	1 cut(s)	738
PluTI	GGCGCC	1 cut(s)	54
Psp6I	CCWGG	1 cut(s)	165
PspFI	CCCAGC	1 cut(s)	104
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	52
PspPI	GGNCC	1 cut(s)	12
PsuI	RGATCY	2 cut(s)	27, 820
PvuII	CAGCTG	1 cut(s)	242
RsaI	GTAC	2 cut(s)	275, 438
RsaNI	GTAC	2 cut(s)	274, 437
SaqAI	TTAA	3 cut(s)	35, 444, 833
SatI	GCNGC	1 cut(s)	737
Sau3AI	GATC	4 cut(s)	27, 140, 791, 820
Sau96I	GGNCC	1 cut(s)	12
ScaI	AGTACT	1 cut(s)	275
ScrFI	CCNGG	1 cut(s)	167
SetI	ASST	3 cut(s)	244, 321, 673
SfoI	GGCGCC	1 cut(s)	52
SmlI	CTYRAG	2 cut(s)	666, 832
SmoI	CTYRAG	2 cut(s)	666, 832
SphI	GCATGC	1 cut(s)	84
Sse9I	AATT	4 cut(s)	7, 334, 373, 484
SspDI	GGCGCC	1 cut(s)	50
SspMI	CTAG	1 cut(s)	647
StyD4I	CCNGG	1 cut(s)	165
TaaI	ACNGT	3 cut(s)	96, 380, 514
TaqI	TCGA	1 cut(s)	785
TasI	AATT	4 cut(s)	7, 334, 373, 484
TatI	WGTACW	1 cut(s)	273
TfiI	GAWTC	5 cut(s)	152, 389, 565, 580, 596
Tru1I	TTAA	3 cut(s)	35, 444, 833
Tru9I	TTAA	3 cut(s)	35, 444, 833
TseI	GCWGC	1 cut(s)	736
TspDTI	ATGAA	4 cut(s)	209, 230, 311, 764
TspGWI	ACGGA	1 cut(s)	454
Vha464I	CTTAAG	1 cut(s)	832
XapI	RAATTY	1 cut(s)	484
XceI	RCATGY	1 cut(s)	84
XmiI	GTMKAC	1 cut(s)	712
XmnI	GAANNNNTTC	1 cut(s)	579
XspI	CTAG	1 cut(s)	647
ZrmI	AGTACT	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.