Prupe.7G264400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0009923
Physical Location & Seq
Forward (+)
21866088 .. 21869863
3776 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G264400.1

Sequence Viewer

Length: 780 bp
ATGAAGAAGATGAAAGGGGTTCTTGCTATGGAGCCTTCTTCATATGCTGGTTACGAGGATCCAAGGACTAGATTCAAGCATCAGAGTCTCATGCAAGACTATGAAGAGCTGCAGAAGGATGCAGAGGCCATGAAGAAGAAATTGCAAATGATGAAACAGAAAAAGTCTACCCTCTTGGCCGAAGTAAGATTTTTGAGTAGAAGATACAAATACTTAATGGGGAACCAGTCCATGAACTCTCGACAGAAGCAAGCTGTGGTGAGAACACACAATTTTGAAACCCAGCGCACCAAAATTATGAAGGGAAGGAGTTACAGTAAGAAGGAATCTGCTTTGCGGATTAATCATGCATTAGACTTAAACCAAAAGGAACGGATTAATCATGGAATGGAAGACACCTTGCGAAAATCTGCTCCAAAATTTGACTTAAACCAGAAGGTAAGGGCTCTTAGCGGGAAGGAAGCTACTTTGCAAAAACCAACTCTAAACTTTGACTTAAACCAGAAGGAAAGGATACAGATAGTGAAGGAATCATCGACAAAGCGAAAGAGTACTCCAGTTTTTGACTTGAACCAGATTTCGAGAGAGGAGGAGGAGGAATTCCAAGCTAATTGTGAGCCATTGAGGATAGAAGAGCCGAACAAAAGTTTACTTAGAGGGGGAAATGATGAGCAGCACACTGATATGAAGTTGCTGGTTTGCAGGACGATTGGGAATGGGTCAAATCGATCAGGGAAGAGGAAGATTACTTGGCAAGATCAGGTGGCTTTAAGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

260

Amino Acids

30.27

Weight (kDa)

9.93

Isoelectric Point (pI)

46.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 167
AciI CCGC 2 cut(s) 337, 453
AclWI GGATC 2 cut(s) 53, 66
AcoI YGGCCR 1 cut(s) 177
AcsI RAATTY 2 cut(s) 419, 599
AfaI GTAC 1 cut(s) 553
AgsI TTSAA 3 cut(s) 76, 278, 571
AluBI AGCT 4 cut(s) 109, 254, 464, 608
AluI AGCT 4 cut(s) 109, 254, 464, 608
Alw26I GTCTC 1 cut(s) 92
AlwI GGATC 2 cut(s) 53, 66
AoxI GGCC 2 cut(s) 126, 177
ApeKI GCWGC 2 cut(s) 109, 673
ApoI RAATTY 2 cut(s) 419, 599
AseI ATTAAT 2 cut(s) 342, 378
AspLEI GCGC 1 cut(s) 288
AsuHPI GGTGA 1 cut(s) 271
BamHI GGATCC 1 cut(s) 58
BanII GRGCYC 1 cut(s) 448
BbsI GAAGAC 1 cut(s) 399
BbvI GCAGC 2 cut(s) 96, 685
BciVI GTATCC 1 cut(s) 507
BcoDI GTCTC 1 cut(s) 92
BfaI CTAG 1 cut(s) 69
BfmI CTRYAG 1 cut(s) 110
BfuI GTATCC 1 cut(s) 507
BisI GCNGC 2 cut(s) 110, 674
BlsI GCNGC 2 cut(s) 111, 675
BmcAI AGTACT 1 cut(s) 553
BmiI GGNNCC 3 cut(s) 33, 60, 224
BmsI GCATC 2 cut(s) 88, 109
BpiI GAAGAC 1 cut(s) 399
BpmI CTGGAG 1 cut(s) 540
Bsa29I ATCGAT 1 cut(s) 727
BsaJI CCNNGG 1 cut(s) 62
BsaXI ACNNNNNCTCC 2 cut(s) 301, 331
Bse1I ACTGG 2 cut(s) 226, 557
BseCI ATCGAT 1 cut(s) 727
BseDI CCNNGG 1 cut(s) 62
BseGI GGATG 1 cut(s) 124
BseNI ACTGG 2 cut(s) 226, 557
BseRI GAGGAG 3 cut(s) 602, 605, 608
BseXI GCAGC 2 cut(s) 96, 685
BseYI CCCAGC 1 cut(s) 282
BshFI GGCC 2 cut(s) 128, 179
BshVI ATCGAT 1 cut(s) 727
BsmAI GTCTC 1 cut(s) 92
BsnI GGCC 2 cut(s) 128, 179
Bsp1286I GDGCHC 1 cut(s) 448
Bsp143I GATC 3 cut(s) 58, 728, 757
BspACI CCGC 2 cut(s) 337, 453
BspANI GGCC 2 cut(s) 128, 179
BspDI ATCGAT 1 cut(s) 727
BspLI GGNNCC 3 cut(s) 33, 60, 224
BspMAI CTGCAG 1 cut(s) 114
BspPI GGATC 2 cut(s) 53, 66
BspQI GCTCTTC 2 cut(s) 99, 627
BsrI ACTGG 2 cut(s) 226, 557
BssECI CCNNGG 1 cut(s) 62
BssMI GATC 3 cut(s) 58, 728, 757
BssT1I CCWWGG 1 cut(s) 62
Bst4CI ACNGT 1 cut(s) 317
Bst6I CTCTTC 3 cut(s) 99, 627, 731
BstC8I GCNNGC 1 cut(s) 252
BstDEI CTNAG 2 cut(s) 449, 653
BstF5I GGATG 1 cut(s) 124
BstHHI GCGC 1 cut(s) 288
BstKTI GATC 3 cut(s) 61, 731, 760
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 3 cut(s) 58, 728, 757
BstSFI CTRYAG 1 cut(s) 110
BstV1I GCAGC 2 cut(s) 96, 685
BstV2I GAAGAC 1 cut(s) 399
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
Bsu15I ATCGAT 1 cut(s) 727
BsuI GTATCC 1 cut(s) 507
BsuRI GGCC 2 cut(s) 128, 179
BsuTUI ATCGAT 1 cut(s) 727
BtsCI GGATG 1 cut(s) 124
BtsIMutI CAGTG 1 cut(s) 678
Cac8I GCNNGC 1 cut(s) 252
CfoI GCGC 1 cut(s) 288
ClaI ATCGAT 1 cut(s) 727
Csp6I GTAC 1 cut(s) 552
CviAII CATG 5 cut(s) 91, 130, 232, 347, 383
CviQI GTAC 1 cut(s) 552
DdeI CTNAG 2 cut(s) 449, 653
DpnI GATC 3 cut(s) 60, 730, 759
DpnII GATC 3 cut(s) 58, 728, 757
EaeI YGGCCR 1 cut(s) 177
Eam1104I CTCTTC 3 cut(s) 99, 627, 731
EarI CTCTTC 3 cut(s) 99, 627, 731
Eco130I CCWWGG 1 cut(s) 62
Eco24I GRGCYC 1 cut(s) 448
EcoRI GAATTC 1 cut(s) 599
EcoT14I CCWWGG 1 cut(s) 62
EcoT22I ATGCAT 1 cut(s) 352
EcoT38I GRGCYC 1 cut(s) 448
ErhI CCWWGG 1 cut(s) 62
FaeI CATG 5 cut(s) 94, 133, 235, 350, 386
FalI AAGNNNNNCTT 1 cut(s) 38
FatI CATG 5 cut(s) 90, 129, 231, 346, 382
FauI CCCGC 1 cut(s) 446
FauNDI CATATG 1 cut(s) 43
FblI GTMKAC 1 cut(s) 167
Fnu4HI GCNGC 2 cut(s) 110, 674
FokI GGATG 1 cut(s) 131
FriOI GRGCYC 1 cut(s) 448
Fsp4HI GCNGC 2 cut(s) 110, 674
FspBI CTAG 1 cut(s) 69
GlaI GCGC 1 cut(s) 287
GluI GCNGC 2 cut(s) 110, 674
GsaI CCCAGC 1 cut(s) 286
GsuI CTGGAG 1 cut(s) 540
HaeIII GGCC 2 cut(s) 128, 179
HhaI GCGC 1 cut(s) 288
Hin1II CATG 5 cut(s) 94, 133, 235, 350, 386
Hin6I GCGC 1 cut(s) 286
HinP1I GCGC 1 cut(s) 286
HinfI GANTC 4 cut(s) 72, 85, 326, 530
HphI GGTGA 1 cut(s) 271
Hpy166II GTNNAC 2 cut(s) 168, 650
Hpy188I TCNGA 1 cut(s) 84
Hpy188III TCNNGA 2 cut(s) 240, 582
Hpy8I GTNNAC 2 cut(s) 168, 650
HpyAV CCTTC 9 cut(s) 45, 109, 295, 300, 316, 430, 451, 499, 520
HpyCH4III ACNGT 1 cut(s) 317
HpyCH4V TGCA 7 cut(s) 94, 112, 122, 145, 350, 472, 702
HpyF3I CTNAG 2 cut(s) 449, 653
Hsp92II CATG 5 cut(s) 94, 133, 235, 350, 386
HspAI GCGC 1 cut(s) 286
Kzo9I GATC 3 cut(s) 58, 728, 757
LguI GCTCTTC 2 cut(s) 99, 627
LmnI GCTCC 2 cut(s) 31, 418
Lsp1109I GCAGC 2 cut(s) 96, 685
LweI GCATC 2 cut(s) 88, 109
MaeI CTAG 1 cut(s) 69
MaeIII GTNAC 2 cut(s) 50, 311
MalI GATC 3 cut(s) 60, 730, 759
MboI GATC 3 cut(s) 58, 728, 757
MflI RGATCY 1 cut(s) 58
MhlI GDGCHC 1 cut(s) 448
MluCI AATT 6 cut(s) 140, 271, 294, 419, 599, 610
MlyI GAGTC 1 cut(s) 94
Mph1103I ATGCAT 1 cut(s) 352
MseI TTAA 7 cut(s) 215, 342, 359, 378, 428, 497, 770
MslI CAYNNNNRTG 1 cut(s) 683
NdeI CATATG 1 cut(s) 43
NdeII GATC 3 cut(s) 58, 728, 757
NlaIII CATG 5 cut(s) 94, 133, 235, 350, 386
NlaIV GGNNCC 3 cut(s) 33, 60, 224
NsiI ATGCAT 1 cut(s) 352
PciSI GCTCTTC 2 cut(s) 99, 627
PfeI GAWTC 3 cut(s) 72, 326, 530
PkrI GCNGC 2 cut(s) 111, 675
PleI GAGTC 1 cut(s) 93
PpsI GAGTC 1 cut(s) 93
PshBI ATTAAT 2 cut(s) 342, 378
PspFI CCCAGC 1 cut(s) 282
PspN4I GGNNCC 3 cut(s) 33, 60, 224
PstI CTGCAG 1 cut(s) 114
PsuI RGATCY 1 cut(s) 58
RsaI GTAC 1 cut(s) 553
RsaNI GTAC 1 cut(s) 552
RseI CAYNNNNRTG 1 cut(s) 683
SapI GCTCTTC 2 cut(s) 99, 627
SaqAI TTAA 7 cut(s) 215, 342, 359, 378, 428, 497, 770
SatI GCNGC 2 cut(s) 110, 674
Sau3AI GATC 3 cut(s) 58, 728, 757
ScaI AGTACT 1 cut(s) 553
SchI GAGTC 1 cut(s) 94
SduI GDGCHC 1 cut(s) 448
SetI ASST 7 cut(s) 111, 256, 401, 441, 466, 610, 765
SfaNI GCATC 2 cut(s) 88, 109
SfcI CTRYAG 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 683
Sse9I AATT 6 cut(s) 140, 271, 294, 419, 599, 610
SsiI CCGC 2 cut(s) 337, 453
SspMI CTAG 1 cut(s) 69
StyI CCWWGG 1 cut(s) 62
TaaI ACNGT 1 cut(s) 317
TaqI TCGA 4 cut(s) 241, 536, 581, 727
TasI AATT 6 cut(s) 140, 271, 294, 419, 599, 610
TatI WGTACW 1 cut(s) 551
TfiI GAWTC 3 cut(s) 72, 326, 530
Tru1I TTAA 7 cut(s) 215, 342, 359, 378, 428, 497, 770
Tru9I TTAA 7 cut(s) 215, 342, 359, 378, 428, 497, 770
TscAI CASTG 1 cut(s) 685
TseI GCWGC 2 cut(s) 109, 673
TspDTI ATGAA 9 cut(s) 17, 26, 30, 117, 146, 167, 248, 314, 701
TspGWI ACGGA 1 cut(s) 388
TspRI CASTG 1 cut(s) 685
VspI ATTAAT 2 cut(s) 342, 378
XapI RAATTY 2 cut(s) 419, 599
XmiI GTMKAC 1 cut(s) 167
XspI CTAG 1 cut(s) 69
ZrmI AGTACT 1 cut(s) 553
Zsp2I ATGCAT 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.