Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009923

Physical Location & Seq

Genomic Coordinates Reverse (-)

755038 .. 757309

Gene Structure 2272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG010600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGAAGAAGATGAAAGGGGTTGTTGCTGTGGAGCCTTCTTCTTATGCTCTGTATCAGGATTCAAAGGCCAGGTTTAAGCATCAGAGTCTTATGCAAGACTATGAGGAGCTGCAGAAGGAAGCAGAGGCCATGAAGAACAGATTGGAGATGATGAAACAGAAAAAGTCTATCCTTACAGCTGAAGTCAGATTTTTGAGGAGAAGATACAAGTACTTGATTGGGAAGCAGTCCATGAACCCCAAACCGAAGCAAGACCTTGTGCAAACACACAATTTGAAAATCCAGCGAACCGATGTTTTGAAGGGAAAGAATTACAGTAAGAAGGAATCTGCTTTGAGACATCCTGCTCCTGCAATGGACTTGAGCCAAAGGGTACGGATTAAAAATGCAATGGAGGTCGCCTTGCAAAAATCTACTCCAAATTCTGACTTGAACCATAAAGCAAGGACTGTCAGCCGGAAGGAAACTACTCTGCATAACTCAAATCCAGTTATTGACTTAAATCAGAAGGAAAAGATTCAGAGTGGGAAGGAATCAACCAAGCGAAAAAACACTCCAGTTTTTGACTTGAACCAAGTTTCGCTTGAGGAAGAGGAGGAAATTCAAGCTGATTGTGAGCCATTGAGGACAGACGAGCCAAACAAAAGTATACTTAGAGGGGGTATTGATGAGCAGCACAATGATATGAAGTTGCTGGTTTGCAGGACTATCGGTAATGGGTCGAACCGATCAGGGAAGAGGAAGATTACTTGGCAAGATCCGGTTGCCTTAAGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

259

Amino Acids

29.9

Weight (kDa)

9.82

Isoelectric Point (pI)

55.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57910 AT5G57910
fragaria_vesca	FvH4_1g00810
malus_domestica	MD02G1006500.v1.1 MD15G1151500.v1.1
prunus_persica	Prupe.7G264400_v2.0.a1 Prupe.7G264400_v2.0.a1
pyrus_communis	pycom02g00540 pycom15g13540
rosa_chinensis	RchiOBHm_Chr2g0085521
rosa_laevigata	RLG00000015696
rosa_multiflora	Rmu_sc0007908.1_g000005 Rmu_sc0020315.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155300
rosa_rugosa	Rorug01G0460900 Rorug01G0461000
rosa_samantha	Rh2AG009600 Rh2BG010600 Rh2CG011200 Rh2DG011900
rosa_wichuraiana	Rw2G000890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	649
AclWI	GGATC	1 cut(s)	752
AcsI	RAATTY	2 cut(s)	421, 600
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	2 cut(s)	212, 375
AflII	CTTAAG	1 cut(s)	769
AgsI	TTSAA	6 cut(s)	63, 277, 301, 433, 571, 605
AjnI	CCWGG	1 cut(s)	68
AjuI	GAANNNNNNNTTGG	2 cut(s)	125, 157
AluBI	AGCT	3 cut(s)	109, 179, 608
AluI	AGCT	3 cut(s)	109, 179, 608
Alw26I	GTCTC	1 cut(s)	331
AlwI	GGATC	1 cut(s)	752
AoxI	GGCC	2 cut(s)	66, 126
ApeKI	GCWGC	2 cut(s)	109, 673
ApoI	RAATTY	2 cut(s)	421, 600
Asp700I	GAANNNNTTC	1 cut(s)	516
BbvI	GCAGC	2 cut(s)	96, 685
BcgI	CGANNNNNNTGC	2 cut(s)	691, 725
BciT130I	CCWGG	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	331
BfmI	CTRYAG	1 cut(s)	110
BfrI	CTTAAG	1 cut(s)	769
BisI	GCNGC	2 cut(s)	110, 674
BlsI	GCNGC	2 cut(s)	111, 675
BmcAI	AGTACT	1 cut(s)	212
Bme1390I	CCNGG	1 cut(s)	70
BmiI	GGNNCC	1 cut(s)	33
BmrFI	CCNGG	1 cut(s)	70
BmsI	GCATC	1 cut(s)	88
BpmI	CTGGAG	1 cut(s)	540
BpuEI	CTTGAG	2 cut(s)	382, 605
BsaWI	WCCGGW	1 cut(s)	760
Bse1I	ACTGG	2 cut(s)	488, 557
Bse3DI	GCAATG	2 cut(s)	360, 396
BseBI	CCWGG	1 cut(s)	70
BseGI	GGATG	1 cut(s)	340
BseMI	GCAATG	2 cut(s)	360, 396
BseNI	ACTGG	2 cut(s)	488, 557
BseRI	GAGGAG	3 cut(s)	119, 211, 608
BseXI	GCAGC	2 cut(s)	96, 685
BshFI	GGCC	2 cut(s)	68, 128
BsiSI	CCGG	2 cut(s)	457, 761
BsmAI	GTCTC	1 cut(s)	331
BsnI	GGCC	2 cut(s)	68, 128
Bsp143I	GATC	2 cut(s)	728, 757
BspANI	GGCC	2 cut(s)	68, 128
BspLI	GGNNCC	1 cut(s)	33
BspMAI	CTGCAG	1 cut(s)	114
BspPI	GGATC	1 cut(s)	752
BspTI	CTTAAG	1 cut(s)	769
BsrDI	GCAATG	2 cut(s)	360, 396
BsrI	ACTGG	2 cut(s)	488, 557
BssMI	GATC	2 cut(s)	728, 757
BssNAI	GTATAC	1 cut(s)	650
Bst1107I	GTATAC	1 cut(s)	650
Bst2UI	CCWGG	1 cut(s)	70
Bst4CI	ACNGT	2 cut(s)	317, 451
Bst6I	CTCTTC	2 cut(s)	585, 731
BstAFI	CTTAAG	1 cut(s)	769
BstDEI	CTNAG	1 cut(s)	653
BstF5I	GGATG	1 cut(s)	340
BstKTI	GATC	2 cut(s)	731, 760
BstMAI	GTCTC	1 cut(s)	331
BstMBI	GATC	2 cut(s)	728, 757
BstNI	CCWGG	1 cut(s)	70
BstSCI	CCNGG	1 cut(s)	68
BstSFI	CTRYAG	1 cut(s)	110
BstV1I	GCAGC	2 cut(s)	96, 685
BstX2I	RGATCY	1 cut(s)	757
BstYI	RGATCY	1 cut(s)	757
BstZ17I	GTATAC	1 cut(s)	650
BsuRI	GGCC	2 cut(s)	68, 128
BtsCI	GGATG	1 cut(s)	340
Csp6I	GTAC	2 cut(s)	211, 374
CviAII	CATG	2 cut(s)	130, 232
CviQI	GTAC	2 cut(s)	211, 374
DdeI	CTNAG	1 cut(s)	653
DpnI	GATC	2 cut(s)	730, 759
DpnII	GATC	2 cut(s)	728, 757
Eam1104I	CTCTTC	2 cut(s)	585, 731
EarI	CTCTTC	2 cut(s)	585, 731
Eco57I	CTGAAG	1 cut(s)	201
EcoRII	CCWGG	1 cut(s)	68
FaeI	CATG	2 cut(s)	133, 235
FaiI	YATR	9 cut(s)	45, 92, 102, 131, 233, 438, 477, 650, 686
FalI	AAGNNNNNCTT	2 cut(s)	567, 599
FatI	CATG	2 cut(s)	129, 231
FblI	GTMKAC	1 cut(s)	649
Fnu4HI	GCNGC	2 cut(s)	110, 674
FokI	GGATG	1 cut(s)	327
Fsp4HI	GCNGC	2 cut(s)	110, 674
GluI	GCNGC	2 cut(s)	110, 674
GsuI	CTGGAG	1 cut(s)	540
HaeIII	GGCC	2 cut(s)	68, 128
HapII	CCGG	2 cut(s)	457, 761
Hin1II	CATG	2 cut(s)	133, 235
HinfI	GANTC	5 cut(s)	59, 85, 326, 517, 533
HpaII	CCGG	2 cut(s)	457, 761
Hpy166II	GTNNAC	1 cut(s)	650
Hpy188I	TCNGA	5 cut(s)	84, 188, 427, 507, 522
Hpy188III	TCNNGA	1 cut(s)	56
Hpy8I	GTNNAC	1 cut(s)	650
HpyAV	CCTTC	7 cut(s)	45, 109, 295, 316, 454, 502, 523
HpyCH4III	ACNGT	2 cut(s)	317, 451
HpyCH4V	TGCA	8 cut(s)	94, 112, 262, 353, 389, 406, 475, 702
HpyF3I	CTNAG	1 cut(s)	653
Hsp92II	CATG	2 cut(s)	133, 235
Kzo9I	GATC	2 cut(s)	728, 757
LmnI	GCTCC	3 cut(s)	31, 106, 352
Lsp1109I	GCAGC	2 cut(s)	96, 685
LweI	GCATC	1 cut(s)	88
MalI	GATC	2 cut(s)	730, 759
MboI	GATC	2 cut(s)	728, 757
MboII	GAAGA	8 cut(s)	16, 19, 30, 145, 213, 602, 748, 754
MflI	RGATCY	1 cut(s)	757
MluCI	AATT	4 cut(s)	271, 310, 421, 600
MlyI	GAGTC	1 cut(s)	94
MroXI	GAANNNNTTC	1 cut(s)	516
MseI	TTAA	4 cut(s)	75, 381, 500, 770
MspA1I	CMGCKG	1 cut(s)	179
MspCI	CTTAAG	1 cut(s)	769
MspI	CCGG	2 cut(s)	457, 761
MspR9I	CCNGG	1 cut(s)	70
MvaI	CCWGG	1 cut(s)	70
NdeII	GATC	2 cut(s)	728, 757
NlaIII	CATG	2 cut(s)	133, 235
NlaIV	GGNNCC	1 cut(s)	33
PdmI	GAANNNNTTC	1 cut(s)	516
PfeI	GAWTC	4 cut(s)	59, 326, 517, 533
PkrI	GCNGC	2 cut(s)	111, 675
PleI	GAGTC	1 cut(s)	93
PpsI	GAGTC	1 cut(s)	93
Psp6I	CCWGG	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	68
PspN4I	GGNNCC	1 cut(s)	33
PstI	CTGCAG	1 cut(s)	114
PsuI	RGATCY	1 cut(s)	757
PvuII	CAGCTG	1 cut(s)	179
RsaI	GTAC	2 cut(s)	212, 375
RsaNI	GTAC	2 cut(s)	211, 374
SaqAI	TTAA	4 cut(s)	75, 381, 500, 770
SatI	GCNGC	2 cut(s)	110, 674
Sau3AI	GATC	2 cut(s)	728, 757
ScaI	AGTACT	1 cut(s)	212
SchI	GAGTC	1 cut(s)	94
ScrFI	CCNGG	1 cut(s)	70
SetI	ASST	6 cut(s)	74, 111, 181, 258, 399, 610
SfaNI	GCATC	1 cut(s)	88
SfcI	CTRYAG	1 cut(s)	110
SmlI	CTYRAG	3 cut(s)	361, 584, 769
SmoI	CTYRAG	3 cut(s)	361, 584, 769
Sse9I	AATT	4 cut(s)	271, 310, 421, 600
StyD4I	CCNGG	1 cut(s)	68
TaaI	ACNGT	2 cut(s)	317, 451
TaqI	TCGA	1 cut(s)	722
TasI	AATT	4 cut(s)	271, 310, 421, 600
TatI	WGTACW	1 cut(s)	210
TfiI	GAWTC	4 cut(s)	59, 326, 517, 533
Tru1I	TTAA	4 cut(s)	75, 381, 500, 770
Tru9I	TTAA	4 cut(s)	75, 381, 500, 770
TseI	GCWGC	2 cut(s)	109, 673
TspDTI	ATGAA	6 cut(s)	17, 26, 146, 167, 248, 701
TspGWI	ACGGA	1 cut(s)	391
Vha464I	CTTAAG	1 cut(s)	769
XapI	RAATTY	2 cut(s)	421, 600
XmiI	GTMKAC	1 cut(s)	649
XmnI	GAANNNNTTC	1 cut(s)	516
ZrmI	AGTACT	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.