Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0009923

Physical Location & Seq

Genomic Coordinates Reverse (-)

443745 .. 445754

Gene Structure 2010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1006500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGAAGAAGATGAAAGGGGTTGTTTCTGACGCTGTGGAGGACCAGAGGACCAGGTTCAAGCACCAGAGTCTCATGCAAGACTATGAGGAGCTGCAGAAGGATGCAGATGCTATGAAGAAGAAATTGCAGATGATGAAACAGAAAAAGTCTACGCTCGTAGCCGAAGTAAGGTTTTTGAGGAGAAGATACAATTACTTATTGGGGAATCAGTCAACACACACTCGACCAAAGCAAGACGTTGTGAAAACACACAATCTAGATACCCAACGCGTGACCTATCTGAAGGGAAAGAGTTCCAGTAAGAAGGAATCAGCATCGCGATGCCCTCTGCCTGCATTAGACTTGAACAAAAAGGAAAAGGTTAAACATGGAATGGAAGACATCGTGCGGAAACCTCCTCCAAAATTTGACTTAAACCTTAATGCAAGGGCTCTTGGCGGAAAGGAAGCTACTTTGCGAACCCCCACTCCAAACTTTGACTTGAATAAGAAGGAAAGGGTTCAGAGCGGGAAGGACACGGCAAAGCGGAAGAGCACTCCGGTTTTTGACTTGAACCAGATTTCGAGAGAGGAGGAGGAGGAGGAATTTCAAGCGAATTATGAGTCGATGAGGATGGAGGAGCCCAACAAAACTTTACACAGAGGGGGAAATGACGATCAGCACAATGACATGAAGCTCCTGGCTTGCAGGACCATCGGGAGTGGGTCAAACCGATCCGGGAAGAGGAAGATTACTTGGCAAGATCAGGTGGCTTTACGGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

255

Amino Acids

29.37

Weight (kDa)

9.87

Isoelectric Point (pI)

51.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57910 AT5G57910
fragaria_vesca	FvH4_1g00810
malus_domestica	MD02G1006500.v1.1 MD15G1151500.v1.1
prunus_persica	Prupe.7G264400_v2.0.a1 Prupe.7G264400_v2.0.a1
pyrus_communis	pycom02g00540 pycom15g13540
rosa_chinensis	RchiOBHm_Chr2g0085521
rosa_laevigata	RLG00000015696
rosa_multiflora	Rmu_sc0007908.1_g000005 Rmu_sc0020315.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155300
rosa_rugosa	Rorug01G0460900 Rorug01G0461000
rosa_samantha	Rh2AG009600 Rh2BG010600 Rh2CG011200 Rh2DG011900
rosa_wichuraiana	Rw2G000890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	507
AccI	GTMKAC	1 cut(s)	149
AccII	CGCG	2 cut(s)	270, 319
AciI	CCGC	4 cut(s)	388, 438, 507, 526
AclWI	GGATC	1 cut(s)	708
AcsI	RAATTY	2 cut(s)	404, 584
AcuI	CTGAAG	1 cut(s)	302
AfiI	CCNNNNNNNGG	2 cut(s)	168, 723
AflIII	ACRYGT	1 cut(s)	268
AgsI	TTSAA	5 cut(s)	58, 346, 484, 553, 590
AjnI	CCWGG	2 cut(s)	50, 678
AloI	GAACNNNNNNTCC	2 cut(s)	451, 483
AluBI	AGCT	3 cut(s)	91, 449, 676
AluI	AGCT	3 cut(s)	91, 449, 676
Alw21I	GWGCWC	1 cut(s)	536
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	1 cut(s)	708
ApeKI	GCWGC	1 cut(s)	91
ApoI	RAATTY	2 cut(s)	404, 584
ArsI	GACNNNNNNTTYG	2 cut(s)	587, 619
Asp700I	GAANNNNTTC	2 cut(s)	292, 498
AspS9I	GGNCC	3 cut(s)	40, 48, 690
AsuC2I	CCSGG	1 cut(s)	718
AvaII	GGWCC	3 cut(s)	40, 48, 690
BanII	GRGCYC	2 cut(s)	433, 624
BbsI	GAAGAC	1 cut(s)	384
Bbv12I	GWGCWC	1 cut(s)	536
BbvI	GCAGC	1 cut(s)	78
BccI	CCATC	2 cut(s)	607, 701
BceAI	ACGGC	1 cut(s)	534
BcgI	CGANNNNNNTGC	2 cut(s)	676, 710
BciT130I	CCWGG	2 cut(s)	52, 680
BcnI	CCSGG	1 cut(s)	718
BcoDI	GTCTC	1 cut(s)	74
BfaI	CTAG	1 cut(s)	257
BfmI	CTRYAG	1 cut(s)	92
BisI	GCNGC	1 cut(s)	92
BlsI	GCNGC	1 cut(s)	93
Bme1390I	CCNGG	3 cut(s)	52, 680, 718
Bme18I	GGWCC	3 cut(s)	40, 48, 690
BmgT120I	GGNCC	3 cut(s)	40, 48, 690
BmiI	GGNNCC	1 cut(s)	621
BmrFI	CCNGG	3 cut(s)	52, 680, 718
BmsI	GCATC	4 cut(s)	91, 97, 311, 323
BpiI	GAAGAC	1 cut(s)	384
BpuMI	CCSGG	1 cut(s)	718
BsaWI	WCCGGW	1 cut(s)	538
BsaXI	ACNNNNNCTCC	2 cut(s)	451, 481
Bsc4I	CCNNNNNNNGG	2 cut(s)	168, 723
Bse1I	ACTGG	1 cut(s)	297
BseBI	CCWGG	2 cut(s)	52, 680
BseGI	GGATG	2 cut(s)	106, 618
BseLI	CCNNNNNNNGG	2 cut(s)	168, 723
BseNI	ACTGG	1 cut(s)	297
BseRI	GAGGAG	8 cut(s)	101, 193, 387, 584, 587, 590, 593, 632
BseXI	GCAGC	1 cut(s)	78
Bsh1236I	CGCG	2 cut(s)	270, 319
BsiHKAI	GWGCWC	1 cut(s)	536
BsiSI	CCGG	2 cut(s)	539, 717
BslI	CCNNNNNNNGG	2 cut(s)	168, 723
BsmAI	GTCTC	1 cut(s)	74
Bsp1286I	GDGCHC	3 cut(s)	433, 536, 624
Bsp143I	GATC	3 cut(s)	655, 713, 742
Bsp68I	TCGCGA	1 cut(s)	319
BspACI	CCGC	4 cut(s)	388, 438, 507, 526
BspFNI	CGCG	2 cut(s)	270, 319
BspLI	GGNNCC	1 cut(s)	621
BspMAI	CTGCAG	1 cut(s)	96
BspPI	GGATC	1 cut(s)	708
BspQI	GCTCTTC	1 cut(s)	524
BsrBI	CCGCTC	1 cut(s)	507
BsrI	ACTGG	1 cut(s)	297
BssMI	GATC	3 cut(s)	655, 713, 742
Bst2UI	CCWGG	2 cut(s)	52, 680
Bst6I	CTCTTC	2 cut(s)	524, 716
BstC8I	GCNNGC	2 cut(s)	333, 685
BstF5I	GGATG	2 cut(s)	106, 618
BstFNI	CGCG	2 cut(s)	270, 319
BstKTI	GATC	3 cut(s)	658, 716, 745
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	3 cut(s)	655, 713, 742
BstNI	CCWGG	2 cut(s)	52, 680
BstSCI	CCNGG	3 cut(s)	50, 678, 716
BstSFI	CTRYAG	1 cut(s)	92
BstUI	CGCG	2 cut(s)	270, 319
BstV1I	GCAGC	1 cut(s)	78
BstV2I	GAAGAC	1 cut(s)	384
BtgZI	GCGATG	2 cut(s)	300, 334
BtsCI	GGATG	2 cut(s)	106, 618
BtuMI	TCGCGA	1 cut(s)	319
Cac8I	GCNNGC	2 cut(s)	333, 685
Cfr13I	GGNCC	3 cut(s)	40, 48, 690
CseI	GACGC	1 cut(s)	38
CsiI	ACCWGGT	1 cut(s)	50
CviAII	CATG	3 cut(s)	73, 368, 670
CviJI	RGCY	8 cut(s)	91, 161, 431, 449, 622, 676, 683, 752
CviKI_1	RGCY	8 cut(s)	91, 161, 431, 449, 622, 676, 683, 752
DpnI	GATC	3 cut(s)	657, 715, 744
DpnII	GATC	3 cut(s)	655, 713, 742
Eam1104I	CTCTTC	2 cut(s)	524, 716
EarI	CTCTTC	2 cut(s)	524, 716
EciI	GGCGGA	1 cut(s)	453
Eco24I	GRGCYC	2 cut(s)	433, 624
Eco47I	GGWCC	3 cut(s)	40, 48, 690
Eco57I	CTGAAG	1 cut(s)	302
EcoRII	CCWGG	2 cut(s)	50, 678
EcoT38I	GRGCYC	2 cut(s)	433, 624
FaeI	CATG	3 cut(s)	76, 371, 673
FaiI	YATR	6 cut(s)	74, 84, 113, 369, 600, 671
FatI	CATG	3 cut(s)	72, 367, 669
FauI	CCCGC	1 cut(s)	500
FblI	GTMKAC	1 cut(s)	149
Fnu4HI	GCNGC	1 cut(s)	92
FokI	GGATG	2 cut(s)	113, 625
FriOI	GRGCYC	2 cut(s)	433, 624
Fsp4HI	GCNGC	1 cut(s)	92
FspBI	CTAG	1 cut(s)	257
GluI	GCNGC	1 cut(s)	92
HapII	CCGG	2 cut(s)	539, 717
HgaI	GACGC	1 cut(s)	38
Hin1II	CATG	3 cut(s)	76, 371, 673
HincII	GTYRAC	1 cut(s)	213
HindII	GTYRAC	1 cut(s)	213
HinfI	GANTC	4 cut(s)	67, 205, 308, 602
HpaII	CCGG	2 cut(s)	539, 717
Hpy166II	GTNNAC	2 cut(s)	150, 213
Hpy188I	TCNGA	4 cut(s)	28, 282, 504, 764
Hpy188III	TCNNGA	4 cut(s)	257, 318, 564, 697
Hpy8I	GTNNAC	2 cut(s)	150, 213
HpyAV	CCTTC	5 cut(s)	91, 277, 298, 484, 505
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	7 cut(s)	76, 94, 104, 127, 335, 425, 687
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	3 cut(s)	76, 371, 673
Kzo9I	GATC	3 cut(s)	655, 713, 742
LguI	GCTCTTC	1 cut(s)	524
LmnI	GCTCC	3 cut(s)	88, 619, 681
Lsp1109I	GCAGC	1 cut(s)	78
LweI	GCATC	4 cut(s)	91, 97, 311, 323
MabI	ACCWGGT	1 cut(s)	50
MaeI	CTAG	1 cut(s)	257
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	3 cut(s)	657, 715, 744
MbiI	CCGCTC	1 cut(s)	507
MboI	GATC	3 cut(s)	655, 713, 742
MboII	GAAGA	9 cut(s)	16, 19, 127, 130, 195, 389, 541, 733, 739
MhlI	GDGCHC	3 cut(s)	433, 536, 624
MluCI	AATT	5 cut(s)	122, 190, 404, 584, 595
MluI	ACGCGT	1 cut(s)	268
MlyI	GAGTC	2 cut(s)	76, 611
MroXI	GAANNNNTTC	2 cut(s)	292, 498
MseI	TTAA	3 cut(s)	363, 413, 420
MslI	CAYNNNNRTG	1 cut(s)	319
MspI	CCGG	2 cut(s)	539, 717
MspR9I	CCNGG	3 cut(s)	52, 680, 718
MvaI	CCWGG	2 cut(s)	52, 680
MvnI	CGCG	2 cut(s)	270, 319
NciI	CCSGG	1 cut(s)	718
NdeII	GATC	3 cut(s)	655, 713, 742
NlaIII	CATG	3 cut(s)	76, 371, 673
NlaIV	GGNNCC	1 cut(s)	621
NmuCI	GTSAC	1 cut(s)	271
NruI	TCGCGA	1 cut(s)	319
PciSI	GCTCTTC	1 cut(s)	524
PdmI	GAANNNNTTC	2 cut(s)	292, 498
PfeI	GAWTC	2 cut(s)	205, 308
PfoI	TCCNGGA	1 cut(s)	716
PkrI	GCNGC	1 cut(s)	93
PleI	GAGTC	2 cut(s)	75, 610
PpsI	GAGTC	2 cut(s)	75, 610
Psp6I	CCWGG	2 cut(s)	50, 678
PspGI	CCWGG	2 cut(s)	50, 678
PspN4I	GGNNCC	1 cut(s)	621
PspPI	GGNCC	3 cut(s)	40, 48, 690
PstI	CTGCAG	1 cut(s)	96
RruI	TCGCGA	1 cut(s)	319
RseI	CAYNNNNRTG	1 cut(s)	319
SapI	GCTCTTC	1 cut(s)	524
SaqAI	TTAA	3 cut(s)	363, 413, 420
SatI	GCNGC	1 cut(s)	92
Sau3AI	GATC	3 cut(s)	655, 713, 742
Sau96I	GGNCC	3 cut(s)	40, 48, 690
SchI	GAGTC	2 cut(s)	76, 611
ScrFI	CCNGG	3 cut(s)	52, 680, 718
SduI	GDGCHC	3 cut(s)	433, 536, 624
SexAI	ACCWGGT	1 cut(s)	50
SfaNI	GCATC	4 cut(s)	91, 97, 311, 323
SfcI	CTRYAG	1 cut(s)	92
SinI	GGWCC	3 cut(s)	40, 48, 690
SmiMI	CAYNNNNRTG	1 cut(s)	319
Sse9I	AATT	5 cut(s)	122, 190, 404, 584, 595
SsiI	CCGC	4 cut(s)	388, 438, 507, 526
SspMI	CTAG	1 cut(s)	257
StyD4I	CCNGG	3 cut(s)	50, 678, 716
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	3 cut(s)	223, 563, 605
TasI	AATT	5 cut(s)	122, 190, 404, 584, 595
TfiI	GAWTC	2 cut(s)	205, 308
Tru1I	TTAA	3 cut(s)	363, 413, 420
Tru9I	TTAA	3 cut(s)	363, 413, 420
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	1 cut(s)	91
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	5 cut(s)	17, 26, 128, 149, 686
VpaK11BI	GGWCC	3 cut(s)	40, 48, 690
XapI	RAATTY	2 cut(s)	404, 584
XbaI	TCTAGA	1 cut(s)	256
XmiI	GTMKAC	1 cut(s)	149
XmnI	GAANNNNTTC	2 cut(s)	292, 498
XspI	CTAG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.