Rmu_sc0007908.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007908.1
OG0009923
Physical Location & Seq
Forward (+)
12763 .. 14408
1646 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007908.1_g000005.1.cds

Sequence Viewer

Length: 771 bp
atgaaaggggttgttgctgtggagccttcttcttatgctctgtatcaggattcaaaggccaggtttaagcatcacagtcttatgcaagactatgaggagctgcagaaggaagcagaggccatgaagaacagattggagatgatgaaacagaaaaagtctatccttacagctgaagtcagatttttgaggagaagatacaagtacttgattgggaagcagtccatgaaccccaaaccgaagcaagaccttgtgcaaacacacaatttgaaaatccagcgaaccgatgttttgaagggaaagaatcacagtaagaaggaatctgctttgagacatcctgctcctgcaatggacttgaaccaaagggtacggattaaaaatgcaatggaagtcgccttgcaaaaatctactccaaattctgacttgaaccctaaggcaaggactgtcagccggaaggaaactactctgcgcaactcaaatccagttattgacttaaatcagaaggaaaagattcagagtgggaaggaatcaaccaagcgaaaaaacactccagtttttgacttgaaccaagtttcgcttgaggaagaggaggaaattcaagctgattgtgagccattgaggacagacgagccaaacaaaagtatactgagagggggtattgatgagcagcacaatgatatgaagttactggtttgcaggactatcgggaatgggtcgaaccgatcagggaagaggaagattagttggcaagatccagttgccttaagggtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

256

Amino Acids

29.48

Weight (kDa)

9.83

Isoelectric Point (pI)

51.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 467
AccI GTMKAC 1 cut(s) 640
AclWI GGATC 1 cut(s) 743
AcsI RAATTY 2 cut(s) 412, 591
AcuI CTGAAG 1 cut(s) 192
AfaI GTAC 2 cut(s) 203, 366
AflII CTTAAG 1 cut(s) 760
AgsI TTSAA 7 cut(s) 54, 268, 292, 355, 424, 562, 596
AjnI CCWGG 1 cut(s) 59
AjuI GAANNNNNNNTTGG 2 cut(s) 116, 148
AluBI AGCT 3 cut(s) 100, 170, 599
AluI AGCT 3 cut(s) 100, 170, 599
Alw26I GTCTC 1 cut(s) 322
AlwI GGATC 1 cut(s) 743
AoxI GGCC 2 cut(s) 57, 117
ApeKI GCWGC 2 cut(s) 100, 664
ApoI RAATTY 2 cut(s) 412, 591
Asp700I GAANNNNTTC 1 cut(s) 507
AspLEI GCGC 1 cut(s) 468
AxyI CCTNAGG 1 cut(s) 429
BbvI GCAGC 2 cut(s) 87, 676
BcgI CGANNNNNNTGC 2 cut(s) 682, 716
BciT130I CCWGG 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 322
BfmI CTRYAG 1 cut(s) 101
BfrI CTTAAG 1 cut(s) 760
BisI GCNGC 2 cut(s) 101, 665
BlsI GCNGC 2 cut(s) 102, 666
BmcAI AGTACT 1 cut(s) 203
Bme1390I CCNGG 1 cut(s) 61
BmiI GGNNCC 1 cut(s) 24
BmrFI CCNGG 1 cut(s) 61
BmsI GCATC 1 cut(s) 79
BpmI CTGGAG 1 cut(s) 531
BpuEI CTTGAG 1 cut(s) 596
Bse1I ACTGG 4 cut(s) 479, 548, 690, 752
Bse21I CCTNAGG 1 cut(s) 429
Bse3DI GCAATG 2 cut(s) 351, 387
BseBI CCWGG 1 cut(s) 61
BseGI GGATG 1 cut(s) 331
BseMI GCAATG 2 cut(s) 351, 387
BseMII CTCAG 1 cut(s) 635
BseNI ACTGG 4 cut(s) 479, 548, 690, 752
BseRI GAGGAG 3 cut(s) 110, 202, 599
BseXI GCAGC 2 cut(s) 87, 676
BshFI GGCC 2 cut(s) 59, 119
BsiSI CCGG 1 cut(s) 448
BsmAI GTCTC 1 cut(s) 322
BsnI GGCC 2 cut(s) 59, 119
Bsp143I GATC 2 cut(s) 719, 748
BspANI GGCC 2 cut(s) 59, 119
BspCNI CTCAG 1 cut(s) 636
BspLI GGNNCC 1 cut(s) 24
BspMAI CTGCAG 1 cut(s) 105
BspPI GGATC 1 cut(s) 743
BspTI CTTAAG 1 cut(s) 760
BsrDI GCAATG 2 cut(s) 351, 387
BsrI ACTGG 4 cut(s) 479, 548, 690, 752
BssMI GATC 2 cut(s) 719, 748
BssNAI GTATAC 1 cut(s) 641
Bst1107I GTATAC 1 cut(s) 641
Bst2UI CCWGG 1 cut(s) 61
Bst4CI ACNGT 3 cut(s) 77, 308, 442
Bst6I CTCTTC 2 cut(s) 576, 722
BstAFI CTTAAG 1 cut(s) 760
BstDEI CTNAG 2 cut(s) 429, 644
BstF5I GGATG 1 cut(s) 331
BstHHI GCGC 1 cut(s) 468
BstKTI GATC 2 cut(s) 722, 751
BstMAI GTCTC 1 cut(s) 322
BstMBI GATC 2 cut(s) 719, 748
BstNI CCWGG 1 cut(s) 61
BstSCI CCNGG 1 cut(s) 59
BstSFI CTRYAG 1 cut(s) 101
BstV1I GCAGC 2 cut(s) 87, 676
BstX2I RGATCY 1 cut(s) 748
BstYI RGATCY 1 cut(s) 748
BstZ17I GTATAC 1 cut(s) 641
Bsu36I CCTNAGG 1 cut(s) 429
BsuRI GGCC 2 cut(s) 59, 119
BtsCI GGATG 1 cut(s) 331
CfoI GCGC 1 cut(s) 468
Csp6I GTAC 2 cut(s) 202, 365
CviAII CATG 2 cut(s) 121, 223
CviJI RGCY 9 cut(s) 25, 59, 100, 119, 170, 447, 599, 610, 628
CviKI_1 RGCY 9 cut(s) 25, 59, 100, 119, 170, 447, 599, 610, 628
CviQI GTAC 2 cut(s) 202, 365
DdeI CTNAG 2 cut(s) 429, 644
DpnI GATC 2 cut(s) 721, 750
DpnII GATC 2 cut(s) 719, 748
Eam1104I CTCTTC 2 cut(s) 576, 722
EarI CTCTTC 2 cut(s) 576, 722
Eco57I CTGAAG 1 cut(s) 192
Eco81I CCTNAGG 1 cut(s) 429
EcoRII CCWGG 1 cut(s) 59
FaeI CATG 2 cut(s) 124, 226
FaiI YATR 7 cut(s) 36, 83, 93, 122, 224, 641, 677
FalI AAGNNNNNCTT 2 cut(s) 558, 590
FatI CATG 2 cut(s) 120, 222
FblI GTMKAC 1 cut(s) 640
Fnu4HI GCNGC 2 cut(s) 101, 665
FokI GGATG 1 cut(s) 318
Fsp4HI GCNGC 2 cut(s) 101, 665
FspI TGCGCA 1 cut(s) 467
GlaI GCGC 1 cut(s) 467
GluI GCNGC 2 cut(s) 101, 665
GsuI CTGGAG 1 cut(s) 531
HaeIII GGCC 2 cut(s) 59, 119
HapII CCGG 1 cut(s) 448
HhaI GCGC 1 cut(s) 468
Hin1II CATG 2 cut(s) 124, 226
Hin6I GCGC 1 cut(s) 466
HinP1I GCGC 1 cut(s) 466
HinfI GANTC 5 cut(s) 50, 301, 317, 508, 524
HpaII CCGG 1 cut(s) 448
Hpy166II GTNNAC 1 cut(s) 641
Hpy188I TCNGA 4 cut(s) 179, 418, 498, 513
Hpy188III TCNNGA 2 cut(s) 47, 703
Hpy8I GTNNAC 1 cut(s) 641
HpyAV CCTTC 7 cut(s) 36, 100, 286, 307, 445, 493, 514
HpyCH4III ACNGT 3 cut(s) 77, 308, 442
HpyCH4V TGCA 7 cut(s) 85, 103, 253, 344, 380, 397, 693
HpyF3I CTNAG 2 cut(s) 429, 644
Hsp92II CATG 2 cut(s) 124, 226
HspAI GCGC 1 cut(s) 466
Kzo9I GATC 2 cut(s) 719, 748
LmnI GCTCC 3 cut(s) 22, 97, 343
Lsp1109I GCAGC 2 cut(s) 87, 676
LweI GCATC 1 cut(s) 79
MaeIII GTNAC 1 cut(s) 681
MalI GATC 2 cut(s) 721, 750
MboI GATC 2 cut(s) 719, 748
MboII GAAGA 6 cut(s) 21, 136, 204, 593, 739, 745
MflI RGATCY 1 cut(s) 748
MluCI AATT 3 cut(s) 262, 412, 591
MnlI CCTC 9 cut(s) 88, 109, 180, 571, 577, 580, 609, 641, 723
MroXI GAANNNNTTC 1 cut(s) 507
MseI TTAA 4 cut(s) 66, 372, 491, 761
MspA1I CMGCKG 1 cut(s) 170
MspCI CTTAAG 1 cut(s) 760
MspI CCGG 1 cut(s) 448
MspR9I CCNGG 1 cut(s) 61
MvaI CCWGG 1 cut(s) 61
NdeII GATC 2 cut(s) 719, 748
NlaIII CATG 2 cut(s) 124, 226
NlaIV GGNNCC 1 cut(s) 24
NsbI TGCGCA 1 cut(s) 467
PdmI GAANNNNTTC 1 cut(s) 507
PfeI GAWTC 5 cut(s) 50, 301, 317, 508, 524
PkrI GCNGC 2 cut(s) 102, 666
Psp6I CCWGG 1 cut(s) 59
PspGI CCWGG 1 cut(s) 59
PspN4I GGNNCC 1 cut(s) 24
PstI CTGCAG 1 cut(s) 105
PsuI RGATCY 1 cut(s) 748
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 2 cut(s) 203, 366
RsaNI GTAC 2 cut(s) 202, 365
SaqAI TTAA 4 cut(s) 66, 372, 491, 761
SatI GCNGC 2 cut(s) 101, 665
Sau3AI GATC 2 cut(s) 719, 748
ScaI AGTACT 1 cut(s) 203
ScrFI CCNGG 1 cut(s) 61
SetI ASST 5 cut(s) 65, 102, 172, 249, 601
SfaNI GCATC 1 cut(s) 79
SfcI CTRYAG 1 cut(s) 101
SmlI CTYRAG 2 cut(s) 575, 760
SmoI CTYRAG 2 cut(s) 575, 760
Sse9I AATT 3 cut(s) 262, 412, 591
StyD4I CCNGG 1 cut(s) 59
TaaI ACNGT 3 cut(s) 77, 308, 442
TaqI TCGA 1 cut(s) 713
TasI AATT 3 cut(s) 262, 412, 591
TatI WGTACW 1 cut(s) 201
TfiI GAWTC 5 cut(s) 50, 301, 317, 508, 524
Tru1I TTAA 4 cut(s) 66, 372, 491, 761
Tru9I TTAA 4 cut(s) 66, 372, 491, 761
TseI GCWGC 2 cut(s) 100, 664
TspDTI ATGAA 5 cut(s) 17, 137, 158, 239, 692
TspGWI ACGGA 1 cut(s) 382
Vha464I CTTAAG 1 cut(s) 760
XapI RAATTY 2 cut(s) 412, 591
XmiI GTMKAC 1 cut(s) 640
XmnI GAANNNNTTC 1 cut(s) 507
ZrmI AGTACT 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.