Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0009923

Physical Location & Seq

Genomic Coordinates Reverse (-)

316314 .. 317785

Gene Structure 1472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g00540.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGAAGAAGATGAAAGGGGTTGTTTCTGATCCTGTGGAGGACCAGAGGACCAGGTTCAAGCACCAGAGTCTCATGCAAGACTATGAGGAGCTGCAGAAGGATGCAGATGCTATGAAGAAGAAATTGCAGATGATGAAACAGAAAAAGTCTACGCTCGTAGCCGAAGTAAGGTTTTTGAGGCGAAGATACAAATACTTAATGGGGAATCAGTCGACAAACCCTCGACCAAAGCAAGATGTTGTGAAAACACACAATCCAGATACCCAACGCGTGACCTATCTGAAGGGAAAGAGCTCCAGTAAGAAGGAATCCGCATCGCGATACCCCCTTCCTTCATTGGACTTGAACAAAAAGGAAAAGGTTAAACATGGAATGGAAGACATCGTGCGGAAACCTCCTCCAAAATTTGACTTAAACCTTAATGCAAGGGCTCTTGGCGGAAAGGAAGCTACTTTGCGAACCCCCACTCCAAACTTTGACTTAAATCAGAAGGAAAGGGTTCAGAGCGGGAAGGACACGGCAAAGCGGAAGAGCACTCCAGTTTTTGACTTGAACCAGATTTCGAGGGAGGAGGAGGAGGAATTTCAAGCGAATTATGAGCCAATGAGGATGGAGGAGCCTAACAAAACTTTACACAGAGGGGGAAATGACGAGCAGCACAATGACATGAAGCTGCTGGCTTGCAGGACTATCGGGAGTGGGTCAAACCGATCCGGGAAGAGGAAGATTACTTGGCAAGATCAGGTGGCTTTACGGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

254

Amino Acids

29.36

Weight (kDa)

9.93

Isoelectric Point (pI)

48.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57910 AT5G57910
fragaria_vesca	FvH4_1g00810
malus_domestica	MD02G1006500.v1.1 MD15G1151500.v1.1
prunus_persica	Prupe.7G264400_v2.0.a1 Prupe.7G264400_v2.0.a1
pyrus_communis	pycom02g00540 pycom15g13540
rosa_chinensis	RchiOBHm_Chr2g0085521
rosa_laevigata	RLG00000015696
rosa_multiflora	Rmu_sc0007908.1_g000005 Rmu_sc0020315.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155300
rosa_rugosa	Rorug01G0460900 Rorug01G0461000
rosa_samantha	Rh2AG009600 Rh2BG010600 Rh2CG011200 Rh2DG011900
rosa_wichuraiana	Rw2G000890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	507
AccI	GTMKAC	2 cut(s)	149, 212
AccII	CGCG	2 cut(s)	270, 319
AciI	CCGC	5 cut(s)	312, 388, 438, 507, 526
AclWI	GGATC	2 cut(s)	23, 705
AcsI	RAATTY	2 cut(s)	404, 581
AcuI	CTGAAG	1 cut(s)	302
AfiI	CCNNNNNNNGG	2 cut(s)	168, 720
AflIII	ACRYGT	1 cut(s)	268
AgsI	TTSAA	4 cut(s)	58, 346, 553, 587
AjnI	CCWGG	1 cut(s)	50
AloI	GAACNNNNNNTCC	2 cut(s)	451, 483
AluBI	AGCT	4 cut(s)	91, 294, 449, 673
AluI	AGCT	4 cut(s)	91, 294, 449, 673
Alw21I	GWGCWC	2 cut(s)	296, 536
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	2 cut(s)	23, 705
ApeKI	GCWGC	3 cut(s)	91, 655, 673
ApoI	RAATTY	2 cut(s)	404, 581
Asp700I	GAANNNNTTC	1 cut(s)	498
AspS9I	GGNCC	2 cut(s)	40, 48
AsuC2I	CCSGG	1 cut(s)	715
AvaII	GGWCC	2 cut(s)	40, 48
BanII	GRGCYC	2 cut(s)	296, 433
BbsI	GAAGAC	1 cut(s)	384
Bbv12I	GWGCWC	2 cut(s)	296, 536
BbvI	GCAGC	3 cut(s)	78, 660, 667
BccI	CCATC	1 cut(s)	604
BceAI	ACGGC	1 cut(s)	534
BcgI	CGANNNNNNTGC	2 cut(s)	673, 707
BciT130I	CCWGG	1 cut(s)	52
BcnI	CCSGG	1 cut(s)	715
BcoDI	GTCTC	1 cut(s)	74
BfmI	CTRYAG	1 cut(s)	92
BisI	GCNGC	3 cut(s)	92, 656, 674
BlsI	GCNGC	3 cut(s)	93, 657, 675
Bme1390I	CCNGG	2 cut(s)	52, 715
Bme18I	GGWCC	2 cut(s)	40, 48
BmgT120I	GGNCC	2 cut(s)	40, 48
BmiI	GGNNCC	1 cut(s)	618
BmrFI	CCNGG	2 cut(s)	52, 715
BmsI	GCATC	3 cut(s)	91, 97, 323
BpiI	GAAGAC	1 cut(s)	384
BpmI	CTGGAG	2 cut(s)	280, 522
BpuMI	CCSGG	1 cut(s)	715
BsaXI	ACNNNNNCTCC	2 cut(s)	451, 481
Bsc4I	CCNNNNNNNGG	2 cut(s)	168, 720
Bse1I	ACTGG	2 cut(s)	297, 539
BseBI	CCWGG	1 cut(s)	52
BseGI	GGATG	2 cut(s)	106, 615
BseLI	CCNNNNNNNGG	2 cut(s)	168, 720
BseNI	ACTGG	2 cut(s)	297, 539
BseRI	GAGGAG	6 cut(s)	101, 387, 584, 587, 590, 629
BseXI	GCAGC	3 cut(s)	78, 660, 667
Bsh1236I	CGCG	2 cut(s)	270, 319
BsiHKAI	GWGCWC	2 cut(s)	296, 536
BsiSI	CCGG	1 cut(s)	714
BslI	CCNNNNNNNGG	2 cut(s)	168, 720
BsmAI	GTCTC	1 cut(s)	74
Bsp1286I	GDGCHC	3 cut(s)	296, 433, 536
Bsp143I	GATC	3 cut(s)	28, 710, 739
Bsp68I	TCGCGA	1 cut(s)	319
BspACI	CCGC	5 cut(s)	312, 388, 438, 507, 526
BspFNI	CGCG	2 cut(s)	270, 319
BspLI	GGNNCC	1 cut(s)	618
BspMAI	CTGCAG	1 cut(s)	96
BspPI	GGATC	2 cut(s)	23, 705
BspQI	GCTCTTC	1 cut(s)	524
BsrBI	CCGCTC	1 cut(s)	507
BsrI	ACTGG	2 cut(s)	297, 539
BssMI	GATC	3 cut(s)	28, 710, 739
Bst2UI	CCWGG	1 cut(s)	52
Bst6I	CTCTTC	2 cut(s)	524, 713
BstC8I	GCNNGC	2 cut(s)	678, 682
BstF5I	GGATG	2 cut(s)	106, 615
BstFNI	CGCG	2 cut(s)	270, 319
BstKTI	GATC	3 cut(s)	31, 713, 742
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	3 cut(s)	28, 710, 739
BstNI	CCWGG	1 cut(s)	52
BstSCI	CCNGG	2 cut(s)	50, 713
BstSFI	CTRYAG	1 cut(s)	92
BstUI	CGCG	2 cut(s)	270, 319
BstV1I	GCAGC	3 cut(s)	78, 660, 667
BstV2I	GAAGAC	1 cut(s)	384
BtgZI	GCGATG	1 cut(s)	300
BtsCI	GGATG	2 cut(s)	106, 615
BtuMI	TCGCGA	1 cut(s)	319
Cac8I	GCNNGC	2 cut(s)	678, 682
Cfr13I	GGNCC	2 cut(s)	40, 48
CsiI	ACCWGGT	1 cut(s)	50
CviAII	CATG	3 cut(s)	73, 368, 667
DpnI	GATC	3 cut(s)	30, 712, 741
DpnII	GATC	3 cut(s)	28, 710, 739
Eam1104I	CTCTTC	2 cut(s)	524, 713
EarI	CTCTTC	2 cut(s)	524, 713
EciI	GGCGGA	1 cut(s)	453
Ecl136II	GAGCTC	1 cut(s)	294
Eco24I	GRGCYC	2 cut(s)	296, 433
Eco47I	GGWCC	2 cut(s)	40, 48
Eco53kI	GAGCTC	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	302
EcoICRI	GAGCTC	1 cut(s)	294
EcoRII	CCWGG	1 cut(s)	50
EcoT38I	GRGCYC	2 cut(s)	296, 433
FaeI	CATG	3 cut(s)	76, 371, 670
FaiI	YATR	6 cut(s)	74, 84, 113, 369, 597, 668
FatI	CATG	3 cut(s)	72, 367, 666
FauI	CCCGC	1 cut(s)	500
FblI	GTMKAC	2 cut(s)	149, 212
Fnu4HI	GCNGC	3 cut(s)	92, 656, 674
FokI	GGATG	2 cut(s)	113, 622
FriOI	GRGCYC	2 cut(s)	296, 433
Fsp4HI	GCNGC	3 cut(s)	92, 656, 674
GluI	GCNGC	3 cut(s)	92, 656, 674
GsuI	CTGGAG	2 cut(s)	280, 522
HapII	CCGG	1 cut(s)	714
Hin1II	CATG	3 cut(s)	76, 371, 670
HincII	GTYRAC	1 cut(s)	213
HindII	GTYRAC	1 cut(s)	213
HinfI	GANTC	3 cut(s)	67, 205, 308
HpaII	CCGG	1 cut(s)	714
Hpy166II	GTNNAC	2 cut(s)	150, 213
Hpy188I	TCNGA	4 cut(s)	28, 282, 489, 504
Hpy188III	TCNNGA	3 cut(s)	257, 318, 694
Hpy8I	GTNNAC	2 cut(s)	150, 213
HpyAV	CCTTC	7 cut(s)	91, 277, 298, 338, 342, 484, 505
HpyCH4V	TGCA	6 cut(s)	76, 94, 104, 127, 425, 684
Hsp92II	CATG	3 cut(s)	76, 371, 670
Kzo9I	GATC	3 cut(s)	28, 710, 739
LguI	GCTCTTC	1 cut(s)	524
LmnI	GCTCC	3 cut(s)	88, 299, 616
Lsp1109I	GCAGC	3 cut(s)	78, 660, 667
LweI	GCATC	3 cut(s)	91, 97, 323
MabI	ACCWGGT	1 cut(s)	50
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	3 cut(s)	30, 712, 741
MbiI	CCGCTC	1 cut(s)	507
MboI	GATC	3 cut(s)	28, 710, 739
MboII	GAAGA	9 cut(s)	16, 19, 127, 130, 195, 389, 541, 730, 736
MhlI	GDGCHC	3 cut(s)	296, 433, 536
MluCI	AATT	4 cut(s)	122, 404, 581, 592
MluI	ACGCGT	1 cut(s)	268
MlyI	GAGTC	1 cut(s)	76
MroXI	GAANNNNTTC	1 cut(s)	498
MseI	TTAA	5 cut(s)	197, 363, 413, 420, 482
MspI	CCGG	1 cut(s)	714
MspR9I	CCNGG	2 cut(s)	52, 715
MvaI	CCWGG	1 cut(s)	52
MvnI	CGCG	2 cut(s)	270, 319
NciI	CCSGG	1 cut(s)	715
NdeII	GATC	3 cut(s)	28, 710, 739
NlaIII	CATG	3 cut(s)	76, 371, 670
NlaIV	GGNNCC	1 cut(s)	618
NmuCI	GTSAC	1 cut(s)	271
NruI	TCGCGA	1 cut(s)	319
PciSI	GCTCTTC	1 cut(s)	524
PdmI	GAANNNNTTC	1 cut(s)	498
PfeI	GAWTC	2 cut(s)	205, 308
PfoI	TCCNGGA	1 cut(s)	713
PkrI	GCNGC	3 cut(s)	93, 657, 675
PleI	GAGTC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	75
Psp124BI	GAGCTC	1 cut(s)	296
Psp6I	CCWGG	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	50
PspN4I	GGNNCC	1 cut(s)	618
PspPI	GGNCC	2 cut(s)	40, 48
PstI	CTGCAG	1 cut(s)	96
RruI	TCGCGA	1 cut(s)	319
SacI	GAGCTC	1 cut(s)	296
SalI	GTCGAC	1 cut(s)	211
SapI	GCTCTTC	1 cut(s)	524
SaqAI	TTAA	5 cut(s)	197, 363, 413, 420, 482
SatI	GCNGC	3 cut(s)	92, 656, 674
Sau3AI	GATC	3 cut(s)	28, 710, 739
Sau96I	GGNCC	2 cut(s)	40, 48
SchI	GAGTC	1 cut(s)	76
ScrFI	CCNGG	2 cut(s)	52, 715
SduI	GDGCHC	3 cut(s)	296, 433, 536
SexAI	ACCWGGT	1 cut(s)	50
SfaNI	GCATC	3 cut(s)	91, 97, 323
SfcI	CTRYAG	1 cut(s)	92
SinI	GGWCC	2 cut(s)	40, 48
Sse9I	AATT	4 cut(s)	122, 404, 581, 592
SsiI	CCGC	5 cut(s)	312, 388, 438, 507, 526
SstI	GAGCTC	1 cut(s)	296
StyD4I	CCNGG	2 cut(s)	50, 713
TaqI	TCGA	3 cut(s)	212, 223, 563
TasI	AATT	4 cut(s)	122, 404, 581, 592
TfiI	GAWTC	2 cut(s)	205, 308
Tru1I	TTAA	5 cut(s)	197, 363, 413, 420, 482
Tru9I	TTAA	5 cut(s)	197, 363, 413, 420, 482
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	3 cut(s)	91, 655, 673
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	6 cut(s)	17, 26, 128, 149, 324, 683
VpaK11BI	GGWCC	2 cut(s)	40, 48
XapI	RAATTY	2 cut(s)	404, 581
XmiI	GTMKAC	2 cut(s)	149, 212
XmnI	GAANNNNTTC	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.