Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006318

Physical Location & Seq

Genomic Coordinates Reverse (-)

23683784 .. 23685831

Gene Structure 2048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G58600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGGTTCTCTTCTTCCTCTTCTTGGCATCTCAGTAGTCTCCGCCATTTTCTTTCTGGTTCTTCAACAACCAGAACAATCTTCTTCAGCCATTATACTGAGCTTGAAGAAACGCCATGGAAGCTCCTCTGGTAGTAGTGGTAACCAGTACAGTTCAAGCAGACCATCAGCTGGTTTCCAAGGGAACAGGAGCACGTGCTCTCTCTTCCTCGGCACGTGGGTTCGTGATAACTCTTATCCTCTCTATAAACCGGCGGATTGTCCCGGCGTCGTTGAGCCTGAGTTCGATTGTCAGATGTACGGTCGTCCTGACTCTGACTACCTCAAGTATCGATGGCAACCTCAGAATTGCAATTTACCCACGTTCAATGGTGCTCAGTTTCTGTTGAAAATGAAGGGCAAAACCATAATGTTTGCGGGTGATTCATTGGGGAAGAATCAATGGGAGTCTTTGATCTGCCTTATTGTTTCATCTGCACCGTCCACTCGGACAGAAATGACCAGAGGCTTGCCTCTCTCCACCTTCAGATTCTTGGATTATGGGATAACAATGTCATTTTACAAAGCTCCGTTCTTGGTGGACATAGATGCTGTTCAAGGCAAGCGTGTGTTGAAGCTGGATGAGATCTCTGGTAATGCCAATGCTTGGCATGACGCTGATCTCCTCATCTTCAACACTGGTCACTGGTGGAGCCACACCGGATCTATGCAAGGATGGGACTTGATTCAATCAGGCAATTCTTATTACCAAGACATGGACCGTTTTGTGGCAATGGAGAAAGCACTTCGTACTTGGGCGTATTGGGTCGAAACTCACGTTGATAGATCCCGAACACAAGTCTTGTTCCTCTCCATTTCTCCAACACACGACAACCCGAGTGACTGGGCGGCATCATCGTCTTCAGGATCCAAGAACTGCTACGGAGAAACAGAACCGATCACAGGAACAGCTTATCCAGTGAGCTCCTACACAGATCAGCTAAGATCAGTGATTGTTGAAGTGCTTCACGGGATGCACAATCCGGCGTTTCTTCTCGACATAACACTCCTCTCTTCCCTAAGAAAAGACGGTCATCCGTCAGTATACAGCGGCCTCATTAGCGGTTCACAAAGGTCTAGACCAGACCAGTCTGCAGATTGTAGCCATTGGTGTTTGCCTGGTTTACCTGATACATGGAACCAGTTGTTGTATACGCTTCTCATCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0008150 GO:0008374 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

402

Amino Acids

44.83

Weight (kDa)

6.36

Isoelectric Point (pI)

43.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	65 - 118	3.3e-20	PMR5 N terminal Domain
PC-Esterase	PF13839	119 - 398	2.7e-92	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58600 AT5G58600
fragaria_vesca	FvH4_3g38960 FvH4_3g38960 FvH4_3g38960 FvH4_3g38960 FvH4_3g38960
malus_domestica	MD03G1066200.v1.1 MD11G1070900.v1.1
prunus_persica	Prupe.6G054900_v2.0.a1 Prupe.6G054900_v2.0.a1
pyrus_communis	pycom03g05290 pycom11g05930
rosa_chinensis	RchiOBHm_Chr5g0070191
rosa_laevigata	RLG00000036119
rosa_multiflora	Rmu_sc0002156.1_g000012
rosa_roxburghii	Rroxscaffold_1G00010920
rosa_rugosa	Rorug05G0403900 Rorug05G0403900 Rorug05G0404000 Rorug05G0404100 Rorug05G0404200
rosa_samantha	Rh5AG459700 Rh5BG478200 Rh5CG502200 Rh5DG490100
rosa_wichuraiana	Rw5G042880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	170, 645, 754
AccI	GTMKAC	2 cut(s)	1083, 1190
AciI	CCGC	6 cut(s)	42, 254, 416, 887, 1089, 1101
AclWI	GGATC	4 cut(s)	709, 819, 900, 913
AcuI	CTGAAG	3 cut(s)	69, 508, 885
AcvI	CACGTG	2 cut(s)	195, 216
AcyI	GRCGYC	1 cut(s)	267
AfaI	GTAC	3 cut(s)	149, 299, 790
AfiI	CCNNNNNNNGG	6 cut(s)	23, 170, 645, 754, 766, 941
AjnI	CCWGG	1 cut(s)	1156
AloI	GAACNNNNNNTCC	2 cut(s)	937, 969
AluBI	AGCT	8 cut(s)	102, 123, 170, 566, 616, 950, 963, 979
AluI	AGCT	8 cut(s)	102, 123, 170, 566, 616, 950, 963, 979
Alw21I	GWGCWC	4 cut(s)	194, 200, 376, 965
Alw26I	GTCTC	1 cut(s)	43
AlwI	GGATC	4 cut(s)	709, 819, 900, 913
AlwNI	CAGNNNCTG	1 cut(s)	382
Ama87I	CYCGRG	1 cut(s)	874
AoxI	GGCC	1 cut(s)	1090
Asp700I	GAANNNNTTC	1 cut(s)	1002
AspS9I	GGNCC	1 cut(s)	757
AsuC2I	CCSGG	1 cut(s)	264
AsuHPI	GGTGA	1 cut(s)	431
AvaI	CYCGRG	1 cut(s)	874
AvaII	GGWCC	1 cut(s)	757
BamHI	GGATCC	1 cut(s)	905
BanII	GRGCYC	1 cut(s)	965
BbrPI	CACGTG	2 cut(s)	195, 216
BbsI	GAAGAC	1 cut(s)	891
Bbv12I	GWGCWC	4 cut(s)	194, 200, 376, 965
BccI	CCATC	3 cut(s)	172, 327, 708
BciT130I	CCWGG	1 cut(s)	1158
BcnI	CCSGG	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	43
BfaI	CTAG	1 cut(s)	1116
BfmI	CTRYAG	1 cut(s)	1131
BglII	AGATCT	1 cut(s)	624
BisI	GCNGC	2 cut(s)	888, 1090
BlsI	GCNGC	2 cut(s)	889, 1091
Bme1390I	CCNGG	2 cut(s)	264, 1158
Bme18I	GGWCC	1 cut(s)	757
BmeT110I	CYCGRG	1 cut(s)	874
BmgT120I	GGNCC	1 cut(s)	757
BmiI	GGNNCC	3 cut(s)	692, 907, 1178
BmrFI	CCNGG	2 cut(s)	264, 1158
BmrI	ACTGGG	1 cut(s)	892
BmsI	GCATC	4 cut(s)	36, 577, 899, 1002
BmuI	ACTGGG	1 cut(s)	892
BpiI	GAAGAC	1 cut(s)	891
BpuEI	CTTGAG	1 cut(s)	308
BpuMI	CCSGG	1 cut(s)	264
Bsa29I	ATCGAT	1 cut(s)	331
BsaAI	YACGTR	2 cut(s)	195, 216
BsaHI	GRCGYC	1 cut(s)	267
BsaJI	CCNNGG	3 cut(s)	115, 178, 208
BsaWI	WCCGGW	1 cut(s)	698
Bsc4I	CCNNNNNNNGG	6 cut(s)	23, 170, 645, 754, 766, 941
Bse118I	RCCGGY	1 cut(s)	250
Bse1I	ACTGG	7 cut(s)	145, 682, 689, 887, 956, 1126, 1180
Bse3DI	GCAATG	1 cut(s)	777
BseBI	CCWGG	1 cut(s)	1158
BseCI	ATCGAT	1 cut(s)	331
BseDI	CCNNGG	3 cut(s)	115, 178, 208
BseGI	GGATG	4 cut(s)	625, 719, 1017, 1072
BseLI	CCNNNNNNNGG	6 cut(s)	23, 170, 645, 754, 766, 941
BseMI	GCAATG	1 cut(s)	777
BseMII	CTCAG	5 cut(s)	45, 89, 270, 356, 389
BseNI	ACTGG	7 cut(s)	145, 682, 689, 887, 956, 1126, 1180
BseRI	GAGGAG	3 cut(s)	115, 653, 1037
BsgI	GTGCAG	1 cut(s)	459
Bsh1285I	CGRYCG	1 cut(s)	304
BshFI	GGCC	1 cut(s)	1092
BshVI	ATCGAT	1 cut(s)	331
BsiEI	CGRYCG	1 cut(s)	304
BsiHKAI	GWGCWC	4 cut(s)	194, 200, 376, 965
BsiHKCI	CYCGRG	1 cut(s)	874
BsiSI	CCGG	4 cut(s)	251, 264, 699, 1022
BslFI	GGGAC	2 cut(s)	246, 731
BslI	CCNNNNNNNGG	6 cut(s)	23, 170, 645, 754, 766, 941
BsmAI	GTCTC	1 cut(s)	43
BsmFI	GGGAC	2 cut(s)	246, 731
BsnI	GGCC	1 cut(s)	1092
BsoBI	CYCGRG	1 cut(s)	874
Bsp1286I	GDGCHC	4 cut(s)	194, 200, 376, 965
Bsp143I	GATC	9 cut(s)	453, 624, 658, 701, 824, 905, 936, 973, 983
Bsp19I	CCATGG	1 cut(s)	115
BspACI	CCGC	6 cut(s)	42, 254, 416, 887, 1089, 1101
BspANI	GGCC	1 cut(s)	1092
BspCNI	CTCAG	5 cut(s)	44, 90, 271, 355, 388
BspDI	ATCGAT	1 cut(s)	331
BspLI	GGNNCC	3 cut(s)	692, 907, 1178
BspMAI	CTGCAG	1 cut(s)	1135
BspPI	GGATC	4 cut(s)	709, 819, 900, 913
BsrDI	GCAATG	1 cut(s)	777
BsrFI	RCCGGY	1 cut(s)	250
BsrI	ACTGG	7 cut(s)	145, 682, 689, 887, 956, 1126, 1180
BssAI	RCCGGY	1 cut(s)	250
BssECI	CCNNGG	3 cut(s)	115, 178, 208
BssMI	GATC	9 cut(s)	453, 624, 658, 701, 824, 905, 936, 973, 983
BssNAI	GTATAC	2 cut(s)	1084, 1191
BssNI	GRCGYC	1 cut(s)	267
BssT1I	CCWWGG	2 cut(s)	115, 178
Bst1107I	GTATAC	2 cut(s)	1084, 1191
Bst2UI	CCWGG	1 cut(s)	1158
Bst4CI	ACNGT	5 cut(s)	152, 302, 480, 761, 1070
Bst6I	CTCTTC	4 cut(s)	15, 24, 209, 1057
BstACI	GRCGYC	1 cut(s)	267
BstBAI	YACGTR	2 cut(s)	195, 216
BstC8I	GCNNGC	2 cut(s)	509, 602
BstDEI	CTNAG	7 cut(s)	31, 98, 279, 342, 375, 980, 1058
BstDSI	CCRYGG	1 cut(s)	115
BstEII	GGTNACC	1 cut(s)	140
BstF5I	GGATG	4 cut(s)	625, 719, 1017, 1072
BstKTI	GATC	9 cut(s)	456, 627, 661, 704, 827, 908, 939, 976, 986
BstMAI	GTCTC	1 cut(s)	43
BstMBI	GATC	9 cut(s)	453, 624, 658, 701, 824, 905, 936, 973, 983
BstMCI	CGRYCG	1 cut(s)	304
BstMWI	GCNNNNNNNGC	2 cut(s)	120, 1098
BstNI	CCWGG	1 cut(s)	1158
BstPI	GGTNACC	1 cut(s)	140
BstSCI	CCNGG	2 cut(s)	262, 1156
BstSFI	CTRYAG	1 cut(s)	1131
BstV2I	GAAGAC	1 cut(s)	891
BstX2I	RGATCY	4 cut(s)	624, 701, 824, 905
BstYI	RGATCY	4 cut(s)	624, 701, 824, 905
BstZ17I	GTATAC	2 cut(s)	1084, 1191
Bsu15I	ATCGAT	1 cut(s)	331
BsuRI	GGCC	1 cut(s)	1092
BsuTUI	ATCGAT	1 cut(s)	331
BtgI	CCRYGG	1 cut(s)	115
BtsCI	GGATG	4 cut(s)	625, 719, 1017, 1072
BtsIMutI	CAGTG	4 cut(s)	675, 682, 963, 993
Cac8I	GCNNGC	2 cut(s)	509, 602
CaiI	CAGNNNCTG	1 cut(s)	382
Cfr10I	RCCGGY	1 cut(s)	250
Cfr13I	GGNCC	1 cut(s)	757
ClaI	ATCGAT	1 cut(s)	331
CseI	GACGC	2 cut(s)	256, 662
Csp6I	GTAC	3 cut(s)	148, 298, 789
CviAII	CATG	4 cut(s)	116, 650, 754, 1173
CviQI	GTAC	3 cut(s)	148, 298, 789
DdeI	CTNAG	7 cut(s)	31, 98, 279, 342, 375, 980, 1058
DpnI	GATC	9 cut(s)	455, 626, 660, 703, 826, 907, 938, 975, 985
DpnII	GATC	9 cut(s)	453, 624, 658, 701, 824, 905, 936, 973, 983
Eam1104I	CTCTTC	4 cut(s)	15, 24, 209, 1057
EarI	CTCTTC	4 cut(s)	15, 24, 209, 1057
EciI	GGCGGA	2 cut(s)	31, 269
Ecl136II	GAGCTC	1 cut(s)	963
Eco130I	CCWWGG	2 cut(s)	115, 178
Eco24I	GRGCYC	1 cut(s)	965
Eco47I	GGWCC	1 cut(s)	757
Eco53kI	GAGCTC	1 cut(s)	963
Eco57I	CTGAAG	3 cut(s)	69, 508, 885
Eco72I	CACGTG	2 cut(s)	195, 216
Eco88I	CYCGRG	1 cut(s)	874
Eco91I	GGTNACC	1 cut(s)	140
EcoICRI	GAGCTC	1 cut(s)	963
EcoO65I	GGTNACC	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	1156
EcoT14I	CCWWGG	2 cut(s)	115, 178
EcoT38I	GRGCYC	1 cut(s)	965
ErhI	CCWWGG	2 cut(s)	115, 178
FaeI	CATG	4 cut(s)	119, 653, 757, 1176
FaqI	GGGAC	2 cut(s)	246, 731
FatI	CATG	4 cut(s)	115, 649, 753, 1172
FauI	CCCGC	1 cut(s)	409
FblI	GTMKAC	2 cut(s)	1083, 1190
Fnu4HI	GCNGC	2 cut(s)	888, 1090
FokI	GGATG	4 cut(s)	632, 726, 1024, 1059
FriOI	GRGCYC	1 cut(s)	965
Fsp4HI	GCNGC	2 cut(s)	888, 1090
FspBI	CTAG	1 cut(s)	1116
GluI	GCNGC	2 cut(s)	888, 1090
HaeIII	GGCC	1 cut(s)	1092
HapII	CCGG	4 cut(s)	251, 264, 699, 1022
HgaI	GACGC	2 cut(s)	256, 662
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	4 cut(s)	119, 653, 757, 1176
HinfI	GANTC	6 cut(s)	311, 422, 436, 446, 528, 724
HpaII	CCGG	4 cut(s)	251, 264, 699, 1022
HphI	GGTGA	1 cut(s)	431
Hpy166II	GTNNAC	6 cut(s)	483, 580, 1084, 1106, 1163, 1191
Hpy188I	TCNGA	5 cut(s)	294, 316, 345, 489, 527
Hpy188III	TCNNGA	6 cut(s)	224, 308, 828, 903, 1034, 1116
Hpy8I	GTNNAC	6 cut(s)	483, 580, 1084, 1106, 1163, 1191
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	2 cut(s)	388, 532
HpyCH4III	ACNGT	5 cut(s)	152, 302, 480, 761, 1070
HpyCH4IV	ACGT	4 cut(s)	194, 215, 362, 816
HpyCH4V	TGCA	5 cut(s)	351, 476, 709, 1015, 1133
HpyF10VI	GCNNNNNNNGC	2 cut(s)	120, 1098
HpyF3I	CTNAG	7 cut(s)	31, 98, 279, 342, 375, 980, 1058
HpySE526I	ACGT	4 cut(s)	194, 215, 362, 816
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	4 cut(s)	119, 653, 757, 1176
Kzo9I	GATC	9 cut(s)	453, 624, 658, 701, 824, 905, 936, 973, 983
LmnI	GCTCC	5 cut(s)	128, 189, 571, 690, 968
LweI	GCATC	4 cut(s)	36, 577, 899, 1002
MaeI	CTAG	1 cut(s)	1116
MaeII	ACGT	4 cut(s)	194, 215, 362, 816
MaeIII	GTNAC	3 cut(s)	140, 680, 878
MalI	GATC	9 cut(s)	455, 626, 660, 703, 826, 907, 938, 975, 985
MboI	GATC	9 cut(s)	453, 624, 658, 701, 824, 905, 936, 973, 983
MflI	RGATCY	4 cut(s)	624, 701, 824, 905
MhlI	GDGCHC	4 cut(s)	194, 200, 376, 965
MluCI	AATT	3 cut(s)	346, 352, 736
MlyI	GAGTC	2 cut(s)	305, 455
MmeI	TCCRAC	1 cut(s)	884
MroXI	GAANNNNTTC	1 cut(s)	1002
MspA1I	CMGCKG	2 cut(s)	170, 1089
MspI	CCGG	4 cut(s)	251, 264, 699, 1022
MspR9I	CCNGG	2 cut(s)	264, 1158
MvaI	CCWGG	1 cut(s)	1158
MwoI	GCNNNNNNNGC	2 cut(s)	120, 1098
NciI	CCSGG	1 cut(s)	264
NcoI	CCATGG	1 cut(s)	115
NdeII	GATC	9 cut(s)	453, 624, 658, 701, 824, 905, 936, 973, 983
NlaIII	CATG	4 cut(s)	119, 653, 757, 1176
NlaIV	GGNNCC	3 cut(s)	692, 907, 1178
NmeAIII	GCCGAG	1 cut(s)	189
NmuCI	GTSAC	2 cut(s)	680, 878
PcsI	WCGNNNNNNNCGW	1 cut(s)	813
PdmI	GAANNNNTTC	1 cut(s)	1002
PfeI	GAWTC	4 cut(s)	422, 436, 528, 724
PflMI	CCANNNNNTGG	3 cut(s)	170, 645, 754
PkrI	GCNGC	2 cut(s)	889, 1091
PleI	GAGTC	2 cut(s)	305, 454
PmaCI	CACGTG	2 cut(s)	195, 216
PmlI	CACGTG	2 cut(s)	195, 216
PpsI	GAGTC	2 cut(s)	305, 454
Ppu21I	YACGTR	2 cut(s)	195, 216
Psp124BI	GAGCTC	1 cut(s)	965
Psp6I	CCWGG	1 cut(s)	1156
PspCI	CACGTG	2 cut(s)	195, 216
PspEI	GGTNACC	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	1156
PspN4I	GGNNCC	3 cut(s)	692, 907, 1178
PspPI	GGNCC	1 cut(s)	757
PstI	CTGCAG	1 cut(s)	1135
PstNI	CAGNNNCTG	1 cut(s)	382
PsuI	RGATCY	4 cut(s)	624, 701, 824, 905
PvuII	CAGCTG	1 cut(s)	170
RsaI	GTAC	3 cut(s)	149, 299, 790
RsaNI	GTAC	3 cut(s)	148, 298, 789
SacI	GAGCTC	1 cut(s)	965
SatI	GCNGC	2 cut(s)	888, 1090
Sau3AI	GATC	9 cut(s)	453, 624, 658, 701, 824, 905, 936, 973, 983
Sau96I	GGNCC	1 cut(s)	757
SchI	GAGTC	2 cut(s)	305, 455
ScrFI	CCNGG	2 cut(s)	264, 1158
SduI	GDGCHC	4 cut(s)	194, 200, 376, 965
SfaNI	GCATC	4 cut(s)	36, 577, 899, 1002
SfcI	CTRYAG	1 cut(s)	1131
SinI	GGWCC	1 cut(s)	757
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	3 cut(s)	346, 352, 736
SsiI	CCGC	6 cut(s)	42, 254, 416, 887, 1089, 1101
SspMI	CTAG	1 cut(s)	1116
SstI	GAGCTC	1 cut(s)	965
StyD4I	CCNGG	2 cut(s)	262, 1156
StyI	CCWWGG	2 cut(s)	115, 178
TaaI	ACNGT	5 cut(s)	152, 302, 480, 761, 1070
TaiI	ACGT	4 cut(s)	197, 218, 365, 819
TaqI	TCGA	4 cut(s)	285, 331, 807, 1035
TasI	AATT	3 cut(s)	346, 352, 736
TatI	WGTACW	1 cut(s)	147
TauI	GCSGC	2 cut(s)	890, 1092
TfiI	GAWTC	4 cut(s)	422, 436, 528, 724
TscAI	CASTG	4 cut(s)	682, 689, 963, 993
TseFI	GTSAC	2 cut(s)	680, 878
Tsp45I	GTSAC	2 cut(s)	680, 878
TspDTI	ATGAA	3 cut(s)	407, 414, 459
TspGWI	ACGGA	3 cut(s)	558, 936, 1065
TspRI	CASTG	4 cut(s)	682, 689, 963, 993
Van91I	CCANNNNNTGG	3 cut(s)	170, 645, 754
VpaK11BI	GGWCC	1 cut(s)	757
XbaI	TCTAGA	1 cut(s)	1115
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XmiI	GTMKAC	2 cut(s)	1083, 1190
XmnI	GAANNNNTTC	1 cut(s)	1002
XspI	CTAG	1 cut(s)	1116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.