Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0006318

Physical Location & Seq

Genomic Coordinates Forward (+)

6066570 .. 6070737

Gene Structure 4168 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1070900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGCTCCTTTCTGCTCCCAATCTATTGGTTCATGCTTAGCTCTTTTGTGCTTAGTTTTTGTTCAATCCCACTCTGCCATAATATACAGCATGAAGAACCACCACCACCACCACAACTTCCACCATCACAGAACAGCTCCGATGTTCCAAACCAACCAATCCAATTGCGCATTGTTTGAAGGCACTTGGGTCCAAGACGACTCCTACCCAATGTACCAATCTTCCCAGTGCCCCTTAATCATCGACCCTGAATTCAACTGCCAAATGTACGGCCGCCCGGACTCCGATTACCTCAAGTACAGATGGAGACCCCTCAACTGTGAGCTCCCAAGGTTCAATGGGGCTGAGTTTCTGCTCAAAATGAAGGGGAAAACAGTGATGTTTGTAGGTGATTCACTTGGGAGGAATCAATGGGAGTCTTTGGTTTGCCTGATTTACTCTGCAAATCCACAAACCCAGACTCAAATGGTCAAAGGAGACCCACTCTCAACATTCAGTTTCCTGGACTACGGCTTGACACTGCAATTTTACAAAGCTCCGTACCTGGTCGACATAGAAATGTATCAAGGGAAGAGAGTTCTGAGGCTGGAGGACATTTCGGAGAACAGCAAGGTGTGGCGGAACGCCGACGTGCTGTCGTTTAACACCGGTCATTGGTGGAGCCACAAAGGAGGTCTCCAAGGGTGGGATTACATGGAATCAGGAGGGTATTATTACCAAGATATGGACCGTTTAGCTGCTTTGGAGAAAGGGATGAAAACATGGGCGAATTGGATTGACTCGAACATCGACACCACAAGGACCAGAGTTTTCTTCCTCTCTATTTCTCCCACACACTATGATTGTGTTTGCCCAAATGAATGGAATGGGGGTGCAACTCCTACAACCACCAAGAACTGCTATGGAGAAACAGCACCAATGAAAGTGAGCGGAGTAACTTATCCCGGGAGTACTTATCCAGACCAAATGAGAGTGATGGACAGTGTGATCCGGGGCATGAGAAATCCTCCGTCTTTGCTGGACATCACAATGCTTTCAGAGCTGAGAAAAGATGGGCACCCATCAATCTACAGTGGTGATTTGAGCCCTCAGCAGAGAGCCAATCCTGACCGTTCAGCAGATTGCAGCCATTGGTGCCTTCCTGGACTGCCAGACACTTGGAACCAACTCTTTTACACAACTTTGTTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0008150 GO:0008374 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

398

Amino Acids

45.62

Weight (kDa)

6.26

Isoelectric Point (pI)

41.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	55 - 108	1.1e-20	PMR5 N terminal Domain
PC-Esterase	PF13839	109 - 393	1.2e-88	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58600 AT5G58600
fragaria_vesca	FvH4_3g38960 FvH4_3g38960 FvH4_3g38960 FvH4_3g38960 FvH4_3g38960
malus_domestica	MD03G1066200.v1.1 MD11G1070900.v1.1
prunus_persica	Prupe.6G054900_v2.0.a1 Prupe.6G054900_v2.0.a1
pyrus_communis	pycom03g05290 pycom11g05930
rosa_chinensis	RchiOBHm_Chr5g0070191
rosa_laevigata	RLG00000036119
rosa_multiflora	Rmu_sc0002156.1_g000012
rosa_roxburghii	Rroxscaffold_1G00010920
rosa_rugosa	Rorug05G0403900 Rorug05G0403900 Rorug05G0404000 Rorug05G0404100 Rorug05G0404200
rosa_samantha	Rh5AG459700 Rh5BG478200 Rh5CG502200 Rh5DG490100
rosa_wichuraiana	Rw5G042880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	169
AccB1I	GGYRCC	2 cut(s)	1056, 1134
AccB7I	CCANNNNNTGG	1 cut(s)	724
AccBSI	CCGCTC	1 cut(s)	930
AccI	GTMKAC	1 cut(s)	549
AciI	CCGC	3 cut(s)	274, 619, 930
AclWI	GGATC	1 cut(s)	982
AcoI	YGGCCR	1 cut(s)	271
AcsI	RAATTY	1 cut(s)	251
AfaI	GTAC	5 cut(s)	215, 269, 299, 542, 952
AfiI	CCNNNNNNNGG	3 cut(s)	654, 685, 724
AgeI	ACCGGT	1 cut(s)	647
AgsI	TTSAA	4 cut(s)	65, 179, 256, 337
AhdI	GACNNNNNGTC	1 cut(s)	634
AjiI	CACGTC	1 cut(s)	631
AjnI	CCWGG	3 cut(s)	501, 543, 1141
AluBI	AGCT	6 cut(s)	41, 137, 325, 536, 737, 1042
AluI	AGCT	6 cut(s)	41, 137, 325, 536, 737, 1042
Alw21I	GWGCWC	1 cut(s)	327
Alw26I	GTCTC	3 cut(s)	301, 471, 680
AlwI	GGATC	1 cut(s)	982
Ama87I	CYCGRG	1 cut(s)	944
AoxI	GGCC	1 cut(s)	271
ApeKI	GCWGC	2 cut(s)	737, 1125
ApoI	RAATTY	1 cut(s)	251
AsiGI	ACCGGT	1 cut(s)	647
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	3 cut(s)	190, 727, 801
AsuC2I	CCSGG	4 cut(s)	278, 945, 946, 992
AsuHPI	GGTGA	2 cut(s)	401, 1088
AvaI	CYCGRG	1 cut(s)	944
AvaII	GGWCC	3 cut(s)	190, 727, 801
BaeGI	GKGCMC	2 cut(s)	233, 1059
BanI	GGYRCC	2 cut(s)	1056, 1134
BanII	GRGCYC	2 cut(s)	327, 1088
Bbv12I	GWGCWC	1 cut(s)	327
BbvCI	CCTCAGC	1 cut(s)	1089
BbvI	GCAGC	2 cut(s)	724, 1137
BccI	CCATC	5 cut(s)	132, 297, 970, 1046, 1069
BceAI	ACGGC	2 cut(s)	286, 526
BciT130I	CCWGG	3 cut(s)	503, 545, 1143
BcnI	CCSGG	4 cut(s)	278, 945, 946, 992
BcoDI	GTCTC	3 cut(s)	301, 471, 680
BfmI	CTRYAG	1 cut(s)	1069
BisI	GCNGC	3 cut(s)	274, 738, 1126
BlpI	GCTNAGC	1 cut(s)	37
BlsI	GCNGC	3 cut(s)	275, 739, 1127
BmcAI	AGTACT	1 cut(s)	952
Bme1390I	CCNGG	7 cut(s)	278, 503, 545, 945, 946, 992, 1143
Bme18I	GGWCC	3 cut(s)	190, 727, 801
BmeRI	GACNNNNNGTC	1 cut(s)	634
BmeT110I	CYCGRG	1 cut(s)	944
BmgBI	CACGTC	1 cut(s)	631
BmgT120I	GGNCC	3 cut(s)	190, 727, 801
BmiI	GGNNCC	6 cut(s)	6, 191, 662, 1058, 1136, 1163
BmrFI	CCNGG	7 cut(s)	278, 503, 545, 945, 946, 992, 1143
BmrI	ACTGGG	1 cut(s)	220
BmuI	ACTGGG	1 cut(s)	220
BplI	GAGNNNNNCTC	4 cut(s)	468, 500, 991, 1023
BpmI	CTGGAG	1 cut(s)	608
Bpu10I	CCTNAGC	1 cut(s)	1089
Bpu1102I	GCTNAGC	1 cut(s)	37
BpuEI	CTTGAG	1 cut(s)	278
BpuMI	CCSGG	4 cut(s)	278, 945, 946, 992
BsaI	GGTCTC	3 cut(s)	301, 471, 680
BsaJI	CCNNGG	4 cut(s)	329, 679, 944, 991
BsaWI	WCCGGW	1 cut(s)	647
Bsc4I	CCNNNNNNNGG	3 cut(s)	654, 685, 724
Bse118I	RCCGGY	1 cut(s)	647
Bse1I	ACTGG	1 cut(s)	226
BseBI	CCWGG	3 cut(s)	503, 545, 1143
BseDI	CCNNGG	4 cut(s)	329, 679, 944, 991
BseGI	GGATG	1 cut(s)	759
BseLI	CCNNNNNNNGG	3 cut(s)	654, 685, 724
BseMII	CTCAG	4 cut(s)	336, 572, 1034, 1103
BseNI	ACTGG	1 cut(s)	226
BseSI	GKGCMC	2 cut(s)	233, 1059
BseX3I	CGGCCG	1 cut(s)	271
BseXI	GCAGC	2 cut(s)	724, 1137
Bsh1285I	CGRYCG	1 cut(s)	274
BshFI	GGCC	1 cut(s)	273
BshNI	GGYRCC	2 cut(s)	1056, 1134
BshTI	ACCGGT	1 cut(s)	647
BsiEI	CGRYCG	1 cut(s)	274
BsiHKAI	GWGCWC	1 cut(s)	327
BsiHKCI	CYCGRG	1 cut(s)	944
BsiSI	CCGG	4 cut(s)	278, 648, 945, 991
BslI	CCNNNNNNNGG	3 cut(s)	654, 685, 724
BsmAI	GTCTC	3 cut(s)	301, 471, 680
BsnI	GGCC	1 cut(s)	273
Bso31I	GGTCTC	3 cut(s)	301, 471, 680
BsoBI	CYCGRG	1 cut(s)	944
Bsp1286I	GDGCHC	4 cut(s)	233, 327, 1059, 1088
Bsp143I	GATC	1 cut(s)	987
Bsp1720I	GCTNAGC	1 cut(s)	37
BspACI	CCGC	3 cut(s)	274, 619, 930
BspANI	GGCC	1 cut(s)	273
BspCNI	CTCAG	4 cut(s)	337, 573, 1035, 1102
BspLI	GGNNCC	6 cut(s)	6, 191, 662, 1058, 1136, 1163
BspPI	GGATC	1 cut(s)	982
BspT107I	GGYRCC	2 cut(s)	1056, 1134
BspTNI	GGTCTC	3 cut(s)	301, 471, 680
BsrBI	CCGCTC	1 cut(s)	930
BsrFI	RCCGGY	1 cut(s)	647
BsrI	ACTGG	1 cut(s)	226
BssAI	RCCGGY	1 cut(s)	647
BssECI	CCNNGG	4 cut(s)	329, 679, 944, 991
BssMI	GATC	1 cut(s)	987
BssT1I	CCWWGG	2 cut(s)	329, 679
Bst2UI	CCWGG	3 cut(s)	503, 545, 1143
Bst4CI	ACNGT	6 cut(s)	320, 376, 731, 983, 1073, 1112
Bst6I	CTCTTC	1 cut(s)	566
BstDEI	CTNAG	6 cut(s)	37, 52, 345, 581, 1043, 1089
BstF5I	GGATG	1 cut(s)	759
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	1 cut(s)	990
BstMAI	GTCTC	3 cut(s)	301, 471, 680
BstMBI	GATC	1 cut(s)	987
BstMCI	CGRYCG	1 cut(s)	274
BstMWI	GCNNNNNNNGC	2 cut(s)	1039, 1134
BstNI	CCWGG	3 cut(s)	503, 545, 1143
BstSCI	CCNGG	7 cut(s)	276, 501, 543, 943, 944, 990, 1141
BstSFI	CTRYAG	1 cut(s)	1069
BstSLI	GKGCMC	2 cut(s)	233, 1059
BstV1I	GCAGC	2 cut(s)	724, 1137
BstXI	CCANNNNNNTGG	3 cut(s)	26, 861, 1158
BstZI	CGGCCG	1 cut(s)	271
BsuRI	GGCC	1 cut(s)	273
BtrI	CACGTC	1 cut(s)	631
BtsCI	GGATG	1 cut(s)	759
BtsI	GCAGTG	1 cut(s)	518
BtsIMutI	CAGTG	5 cut(s)	233, 381, 518, 988, 1078
CfoI	GCGC	1 cut(s)	170
Cfr10I	RCCGGY	1 cut(s)	647
Cfr13I	GGNCC	3 cut(s)	190, 727, 801
Cfr9I	CCCGGG	1 cut(s)	944
CsiI	ACCWGGT	1 cut(s)	543
Csp6I	GTAC	5 cut(s)	214, 268, 298, 541, 951
CspAI	ACCGGT	1 cut(s)	647
CviAII	CATG	5 cut(s)	33, 91, 694, 762, 997
CviQI	GTAC	5 cut(s)	214, 268, 298, 541, 951
DdeI	CTNAG	6 cut(s)	37, 52, 345, 581, 1043, 1089
DpnI	GATC	1 cut(s)	989
DpnII	GATC	1 cut(s)	987
DriI	GACNNNNNGTC	1 cut(s)	634
EaeI	YGGCCR	1 cut(s)	271
EagI	CGGCCG	1 cut(s)	271
Eam1104I	CTCTTC	1 cut(s)	566
Eam1105I	GACNNNNNGTC	1 cut(s)	634
EarI	CTCTTC	1 cut(s)	566
EciI	GGCGGA	1 cut(s)	634
Ecl136II	GAGCTC	1 cut(s)	325
EclXI	CGGCCG	1 cut(s)	271
Eco130I	CCWWGG	2 cut(s)	329, 679
Eco24I	GRGCYC	2 cut(s)	327, 1088
Eco31I	GGTCTC	3 cut(s)	301, 471, 680
Eco47I	GGWCC	3 cut(s)	190, 727, 801
Eco52I	CGGCCG	1 cut(s)	271
Eco53kI	GAGCTC	1 cut(s)	325
Eco88I	CYCGRG	1 cut(s)	944
EcoICRI	GAGCTC	1 cut(s)	325
EcoRI	GAATTC	1 cut(s)	251
EcoRII	CCWGG	3 cut(s)	501, 543, 1141
EcoT14I	CCWWGG	2 cut(s)	329, 679
EcoT38I	GRGCYC	2 cut(s)	327, 1088
ErhI	CCWWGG	2 cut(s)	329, 679
FaeI	CATG	5 cut(s)	36, 94, 697, 765, 1000
FatI	CATG	5 cut(s)	32, 90, 693, 761, 996
FblI	GTMKAC	1 cut(s)	549
Fnu4HI	GCNGC	3 cut(s)	274, 738, 1126
FokI	GGATG	1 cut(s)	766
FriOI	GRGCYC	2 cut(s)	327, 1088
Fsp4HI	GCNGC	3 cut(s)	274, 738, 1126
FspI	TGCGCA	1 cut(s)	169
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	3 cut(s)	274, 738, 1126
GsuI	CTGGAG	1 cut(s)	608
HaeIII	GGCC	1 cut(s)	273
HapII	CCGG	4 cut(s)	278, 648, 945, 991
HhaI	GCGC	1 cut(s)	170
Hin1II	CATG	5 cut(s)	36, 94, 697, 765, 1000
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HinfI	GANTC	8 cut(s)	200, 281, 392, 406, 416, 460, 698, 779
HpaII	CCGG	4 cut(s)	278, 648, 945, 991
HphI	GGTGA	2 cut(s)	401, 1088
Hpy166II	GTNNAC	1 cut(s)	550
Hpy188I	TCNGA	5 cut(s)	141, 286, 582, 601, 1039
Hpy188III	TCNNGA	3 cut(s)	702, 959, 1106
Hpy8I	GTNNAC	1 cut(s)	550
Hpy99I	CGWCG	1 cut(s)	632
HpyAV	CCTTC	3 cut(s)	173, 358, 1148
HpyCH4III	ACNGT	6 cut(s)	320, 376, 731, 983, 1073, 1112
HpyCH4IV	ACGT	1 cut(s)	630
HpyCH4V	TGCA	4 cut(s)	443, 523, 875, 1125
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1039, 1134
HpyF3I	CTNAG	6 cut(s)	37, 52, 345, 581, 1043, 1089
HpySE526I	ACGT	1 cut(s)	630
Hsp92II	CATG	5 cut(s)	36, 94, 697, 765, 1000
HspAI	GCGC	1 cut(s)	168
Kzo9I	GATC	1 cut(s)	987
LmnI	GCTCC	6 cut(s)	10, 20, 142, 330, 541, 660
Lsp1109I	GCAGC	2 cut(s)	724, 1137
MabI	ACCWGGT	1 cut(s)	543
MaeII	ACGT	1 cut(s)	630
MaeIII	GTNAC	1 cut(s)	934
MalI	GATC	1 cut(s)	989
MbiI	CCGCTC	1 cut(s)	930
MboI	GATC	1 cut(s)	987
MboII	GAAGA	5 cut(s)	106, 213, 583, 805, 1180
MfeI	CAATTG	1 cut(s)	163
MhlI	GDGCHC	4 cut(s)	233, 327, 1059, 1088
MluCI	AATT	4 cut(s)	163, 251, 524, 769
MlyI	GAGTC	5 cut(s)	194, 275, 425, 454, 773
MseI	TTAA	2 cut(s)	236, 642
MslI	CAYNNNNRTG	2 cut(s)	557, 1028
MspI	CCGG	4 cut(s)	278, 648, 945, 991
MspR9I	CCNGG	7 cut(s)	278, 503, 545, 945, 946, 992, 1143
MunI	CAATTG	1 cut(s)	163
MvaI	CCWGG	3 cut(s)	503, 545, 1143
MwoI	GCNNNNNNNGC	2 cut(s)	1039, 1134
NciI	CCSGG	4 cut(s)	278, 945, 946, 992
NdeII	GATC	1 cut(s)	987
NlaIII	CATG	5 cut(s)	36, 94, 697, 765, 1000
NlaIV	GGNNCC	6 cut(s)	6, 191, 662, 1058, 1136, 1163
NsbI	TGCGCA	1 cut(s)	169
PfeI	GAWTC	3 cut(s)	392, 406, 698
PflMI	CCANNNNNTGG	1 cut(s)	724
PfoI	TCCNGGA	2 cut(s)	501, 1141
PinAI	ACCGGT	1 cut(s)	647
PkrI	GCNGC	3 cut(s)	275, 739, 1127
PleI	GAGTC	5 cut(s)	194, 275, 424, 454, 773
PpsI	GAGTC	5 cut(s)	194, 275, 424, 454, 773
Psp124BI	GAGCTC	1 cut(s)	327
Psp6I	CCWGG	3 cut(s)	501, 543, 1141
PspGI	CCWGG	3 cut(s)	501, 543, 1141
PspN4I	GGNNCC	6 cut(s)	6, 191, 662, 1058, 1136, 1163
PspPI	GGNCC	3 cut(s)	190, 727, 801
RsaI	GTAC	5 cut(s)	215, 269, 299, 542, 952
RsaNI	GTAC	5 cut(s)	214, 268, 298, 541, 951
RseI	CAYNNNNRTG	2 cut(s)	557, 1028
SacI	GAGCTC	1 cut(s)	327
SalI	GTCGAC	1 cut(s)	548
SaqAI	TTAA	2 cut(s)	236, 642
SatI	GCNGC	3 cut(s)	274, 738, 1126
Sau3AI	GATC	1 cut(s)	987
Sau96I	GGNCC	3 cut(s)	190, 727, 801
ScaI	AGTACT	1 cut(s)	952
SchI	GAGTC	5 cut(s)	194, 275, 425, 454, 773
ScrFI	CCNGG	7 cut(s)	278, 503, 545, 945, 946, 992, 1143
SduI	GDGCHC	4 cut(s)	233, 327, 1059, 1088
SexAI	ACCWGGT	1 cut(s)	543
SfcI	CTRYAG	1 cut(s)	1069
SinI	GGWCC	3 cut(s)	190, 727, 801
SmaI	CCCGGG	1 cut(s)	946
SmiMI	CAYNNNNRTG	2 cut(s)	557, 1028
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	4 cut(s)	163, 251, 524, 769
SsiI	CCGC	3 cut(s)	274, 619, 930
SstI	GAGCTC	1 cut(s)	327
StyD4I	CCNGG	7 cut(s)	276, 501, 543, 943, 944, 990, 1141
StyI	CCWWGG	2 cut(s)	329, 679
TaaI	ACNGT	6 cut(s)	320, 376, 731, 983, 1073, 1112
TaiI	ACGT	1 cut(s)	633
TaqI	TCGA	4 cut(s)	243, 549, 782, 789
TasI	AATT	4 cut(s)	163, 251, 524, 769
TatI	WGTACW	2 cut(s)	297, 950
TauI	GCSGC	1 cut(s)	276
TfiI	GAWTC	3 cut(s)	392, 406, 698
Tru1I	TTAA	2 cut(s)	236, 642
Tru9I	TTAA	2 cut(s)	236, 642
TscAI	CASTG	5 cut(s)	233, 381, 525, 988, 1078
TseI	GCWGC	2 cut(s)	737, 1125
TspDTI	ATGAA	6 cut(s)	21, 107, 377, 770, 873, 935
TspGWI	ACGGA	2 cut(s)	528, 999
TspMI	CCCGGG	1 cut(s)	944
TspRI	CASTG	5 cut(s)	233, 381, 525, 988, 1078
Van91I	CCANNNNNTGG	1 cut(s)	724
VpaK11BI	GGWCC	3 cut(s)	190, 727, 801
XapI	RAATTY	1 cut(s)	251
XmaI	CCCGGG	1 cut(s)	944
XmiI	GTMKAC	1 cut(s)	549
ZrmI	AGTACT	1 cut(s)	952

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.