Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006318

Physical Location & Seq

Genomic Coordinates Forward (+)

55563941 .. 55564915

Gene Structure 975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0404100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGTTAATCAGAGAGGTATGAGTTTGGGGCCGTCGGAGATTATTGCCGGTGCCGAGTTTCGGCGACCAAGCAAGCTTGAGATAACCCCTGTTCAGAAAATACAAGATCACTGGAAATCTTGCTTCTTGAAGCTTCAGAACATTGATGAACTGAGGGACTGGGCTGCGACAACGGCTTCATGGTTAATTTCGGATCCTCAGGTAGAAATTTCGGATCGAGGCTGGGCTTGCTCTGCTGCGGTTGGTGTCGACGATGCTGTTAGGCGGCTTCTTGGAGCTTTGCTATTCTTAGCGTCGTTGCCGGAGTTGCAGCAGCCTTTAGAGATGCTGGGTGGGCTCCTACGTTTCCATATGCCGCCAACGGTGATTGGGTGGGTTATGTCGGAGTTGCAGATACGGTTGACATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0008150 GO:0008374 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

136

Amino Acids

15.2

Weight (kDa)

5.64

Isoelectric Point (pI)

61.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58600 AT5G58600
fragaria_vesca	FvH4_3g38960 FvH4_3g38960 FvH4_3g38960 FvH4_3g38960 FvH4_3g38960
malus_domestica	MD03G1066200.v1.1 MD11G1070900.v1.1
prunus_persica	Prupe.6G054900_v2.0.a1 Prupe.6G054900_v2.0.a1
pyrus_communis	pycom03g05290 pycom11g05930
rosa_chinensis	RchiOBHm_Chr5g0070191
rosa_laevigata	RLG00000036119
rosa_multiflora	Rmu_sc0002156.1_g000012
rosa_roxburghii	Rroxscaffold_1G00010920
rosa_rugosa	Rorug05G0403900 Rorug05G0403900 Rorug05G0404000 Rorug05G0404100 Rorug05G0404200
rosa_samantha	Rh5AG459700 Rh5BG478200 Rh5CG502200 Rh5DG490100
rosa_wichuraiana	Rw5G042880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	50
AccI	GTMKAC	1 cut(s)	249
AciI	CCGC	3 cut(s)	239, 265, 356
AclWI	GGATC	3 cut(s)	188, 201, 222
AcsI	RAATTY	1 cut(s)	207
AcuI	CTGAAG	1 cut(s)	119
AfiI	CCNNNNNNNGG	1 cut(s)	60
AgsI	TTSAA	1 cut(s)	130
AluBI	AGCT	3 cut(s)	76, 133, 278
AluI	AGCT	3 cut(s)	76, 133, 278
AlwI	GGATC	3 cut(s)	188, 201, 222
AoxI	GGCC	1 cut(s)	29
ApeKI	GCWGC	4 cut(s)	164, 236, 310, 313
ApoI	RAATTY	1 cut(s)	207
AspS9I	GGNCC	1 cut(s)	29
AsuHPI	GGTGA	1 cut(s)	376
AxyI	CCTNAGG	1 cut(s)	198
BamHI	GGATCC	1 cut(s)	193
BanI	GGYRCC	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	339
BbvI	GCAGC	4 cut(s)	151, 223, 322, 325
BceAI	ACGGC	2 cut(s)	16, 189
BisI	GCNGC	6 cut(s)	165, 237, 266, 311, 314, 356
BlsI	GCNGC	6 cut(s)	166, 238, 267, 312, 315, 357
BmgT120I	GGNCC	1 cut(s)	29
BmiI	GGNNCC	4 cut(s)	30, 52, 195, 338
BmrI	ACTGGG	1 cut(s)	169
BmsI	GCATC	2 cut(s)	244, 315
BmuI	ACTGGG	1 cut(s)	169
BpuEI	CTTGAG	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
Bse118I	RCCGGY	1 cut(s)	47
Bse1I	ACTGG	2 cut(s)	116, 164
Bse21I	CCTNAGG	1 cut(s)	198
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseMII	CTCAG	2 cut(s)	143, 212
BseNI	ACTGG	2 cut(s)	116, 164
BseXI	GCAGC	4 cut(s)	151, 223, 322, 325
BseYI	CCCAGC	2 cut(s)	222, 328
BshFI	GGCC	1 cut(s)	31
BshNI	GGYRCC	1 cut(s)	50
BsiSI	CCGG	2 cut(s)	48, 302
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	60
BsmFI	GGGAC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	31
Bsp1286I	GDGCHC	1 cut(s)	339
Bsp143I	GATC	3 cut(s)	106, 193, 214
BspACI	CCGC	3 cut(s)	239, 265, 356
BspANI	GGCC	1 cut(s)	31
BspCNI	CTCAG	2 cut(s)	144, 211
BspLI	GGNNCC	4 cut(s)	30, 52, 195, 338
BspPI	GGATC	3 cut(s)	188, 201, 222
BspT107I	GGYRCC	1 cut(s)	50
BsrFI	RCCGGY	1 cut(s)	47
BsrI	ACTGG	2 cut(s)	116, 164
BssAI	RCCGGY	1 cut(s)	47
BssMI	GATC	3 cut(s)	106, 193, 214
Bst4CI	ACNGT	2 cut(s)	364, 399
BstC8I	GCNNGC	2 cut(s)	74, 229
BstDEI	CTNAG	3 cut(s)	152, 198, 289
BstKTI	GATC	3 cut(s)	109, 196, 217
BstMBI	GATC	3 cut(s)	106, 193, 214
BstMWI	GCNNNNNNNGC	5 cut(s)	173, 228, 233, 307, 334
BstNSI	RCATGY	1 cut(s)	408
BstV1I	GCAGC	4 cut(s)	151, 223, 322, 325
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
Bsu36I	CCTNAGG	1 cut(s)	198
BsuRI	GGCC	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	109
Cac8I	GCNNGC	2 cut(s)	74, 229
Cfr10I	RCCGGY	1 cut(s)	47
Cfr13I	GGNCC	1 cut(s)	29
CseI	GACGC	1 cut(s)	282
CviAII	CATG	2 cut(s)	180, 405
DdeI	CTNAG	3 cut(s)	152, 198, 289
DpnI	GATC	3 cut(s)	108, 195, 216
DpnII	GATC	3 cut(s)	106, 193, 214
Eco24I	GRGCYC	1 cut(s)	339
Eco57I	CTGAAG	1 cut(s)	119
Eco81I	CCTNAGG	1 cut(s)	198
EcoT38I	GRGCYC	1 cut(s)	339
FaeI	CATG	2 cut(s)	183, 408
FaiI	YATR	6 cut(s)	20, 181, 351, 353, 380, 406
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	2 cut(s)	179, 404
FauNDI	CATATG	1 cut(s)	351
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	6 cut(s)	165, 237, 266, 311, 314, 356
FriOI	GRGCYC	1 cut(s)	339
Fsp4HI	GCNGC	6 cut(s)	165, 237, 266, 311, 314, 356
GluI	GCNGC	6 cut(s)	165, 237, 266, 311, 314, 356
GsaI	CCCAGC	2 cut(s)	226, 332
HaeIII	GGCC	1 cut(s)	31
HapII	CCGG	2 cut(s)	48, 302
HgaI	GACGC	1 cut(s)	282
Hin1II	CATG	2 cut(s)	183, 408
HincII	GTYRAC	2 cut(s)	250, 402
HindII	GTYRAC	2 cut(s)	250, 402
HindIII	AAGCTT	2 cut(s)	74, 131
HpaII	CCGG	2 cut(s)	48, 302
HphI	GGTGA	1 cut(s)	376
Hpy166II	GTNNAC	2 cut(s)	250, 402
Hpy188I	TCNGA	7 cut(s)	12, 37, 96, 138, 193, 214, 385
Hpy188III	TCNNGA	1 cut(s)	127
Hpy8I	GTNNAC	2 cut(s)	250, 402
Hpy99I	CGWCG	3 cut(s)	37, 254, 298
HpyCH4III	ACNGT	2 cut(s)	364, 399
HpyCH4IV	ACGT	1 cut(s)	343
HpyCH4V	TGCA	2 cut(s)	310, 391
HpyF10VI	GCNNNNNNNGC	5 cut(s)	173, 228, 233, 307, 334
HpyF3I	CTNAG	3 cut(s)	152, 198, 289
HpySE526I	ACGT	1 cut(s)	343
Hsp92II	CATG	2 cut(s)	183, 408
Kzo9I	GATC	3 cut(s)	106, 193, 214
LmnI	GCTCC	2 cut(s)	275, 342
LpnPI	CCDG	8 cut(s)	61, 97, 102, 145, 185, 208, 314, 315
Lsp1109I	GCAGC	4 cut(s)	151, 223, 322, 325
LweI	GCATC	2 cut(s)	244, 315
MaeII	ACGT	1 cut(s)	343
MalI	GATC	3 cut(s)	108, 195, 216
MboI	GATC	3 cut(s)	106, 193, 214
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	1 cut(s)	339
MluCI	AATT	2 cut(s)	186, 207
MmeI	TCCRAC	2 cut(s)	15, 363
MnlI	CCTC	4 cut(s)	8, 147, 207, 212
MseI	TTAA	2 cut(s)	6, 185
MspI	CCGG	2 cut(s)	48, 302
MwoI	GCNNNNNNNGC	5 cut(s)	173, 228, 233, 307, 334
NdeI	CATATG	1 cut(s)	351
NdeII	GATC	3 cut(s)	106, 193, 214
NlaIII	CATG	2 cut(s)	183, 408
NlaIV	GGNNCC	4 cut(s)	30, 52, 195, 338
NmeAIII	GCCGAG	1 cut(s)	79
NspI	RCATGY	1 cut(s)	408
PkrI	GCNGC	6 cut(s)	166, 238, 267, 312, 315, 357
PspFI	CCCAGC	2 cut(s)	222, 328
PspN4I	GGNNCC	4 cut(s)	30, 52, 195, 338
PspPI	GGNCC	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	193
SalI	GTCGAC	1 cut(s)	248
SaqAI	TTAA	2 cut(s)	6, 185
SatI	GCNGC	6 cut(s)	165, 237, 266, 311, 314, 356
Sau3AI	GATC	3 cut(s)	106, 193, 214
Sau96I	GGNCC	1 cut(s)	29
SduI	GDGCHC	1 cut(s)	339
SetI	ASST	6 cut(s)	19, 78, 135, 204, 280, 346
SfaNI	GCATC	2 cut(s)	244, 315
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	2 cut(s)	186, 207
SsiI	CCGC	3 cut(s)	239, 265, 356
TaaI	ACNGT	2 cut(s)	364, 399
TaiI	ACGT	1 cut(s)	346
TaqI	TCGA	2 cut(s)	217, 249
TasI	AATT	2 cut(s)	186, 207
TauI	GCSGC	2 cut(s)	268, 358
Tru1I	TTAA	2 cut(s)	6, 185
Tru9I	TTAA	2 cut(s)	6, 185
TscAI	CASTG	1 cut(s)	116
TseI	GCWGC	4 cut(s)	164, 236, 310, 313
TspDTI	ATGAA	2 cut(s)	162, 168
TspRI	CASTG	1 cut(s)	116
XapI	RAATTY	1 cut(s)	207
XceI	RCATGY	1 cut(s)	408
XmiI	GTMKAC	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.