Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006318

Physical Location & Seq

Genomic Coordinates Reverse (-)

13938299 .. 13941820

Gene Structure 3522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00010920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGCAGGACTATGGTGTAACCCTGCAATACTACCGAGCTCCATATCTGGTGGACATTGATATGATGGAAGGAAAGAGAGTTCTGAGGCTTGAGGACATCTCGGAGAACAGCAATGCGTGGCGTTCCGCCGATGTGCTGTCGTTTAACACCGGTCACTGGTGGAGTCACACAGGAGGTCTCCAAGGGTGGGATTACATGGAATCAGGAGGAAAATATTACAAAGATATGGATCGTTTGGCTGCTTTGGAGAAAGGAATGAGAACCTGGGCAAATTGGGTCGACAAAAACATCGATACCACAAGGACCCGAGTTTTCTTTCTCTCCATATCTCCCACACATTACAACCCAAATGAATGGAATGGGGGAGCAACACCTACAACCACCAAGAACTGCTATGGAGAAACATCACCGATGACAGTGAGTGGGATAACTTATCCGGGGATGACATATCCAGACCAGATGAGAGTGATGGACAGTGTGATCCGAGAAATGCGCAACCCTGCATTTCTGCTAGACATTACAATGCTTTCAGAGCTCAGAAAAGATGGGCACCCTTCAATCTACAGCGGGGATTTGAGTCCTACACAGAGAGCAAATCCTCAACGTTCAGCTGATTGTAGCCATTGGTGCCTTCCTGGATTGCCAGACACTTGGAACCAACTGTTTTACACTACCTTGCTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0008150 GO:0008374 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

228

Amino Acids

26.23

Weight (kDa)

5.51

Isoelectric Point (pI)

31.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	2 - 224	5.9e-67	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58600 AT5G58600
fragaria_vesca	FvH4_3g38960 FvH4_3g38960 FvH4_3g38960 FvH4_3g38960 FvH4_3g38960
malus_domestica	MD03G1066200.v1.1 MD11G1070900.v1.1
prunus_persica	Prupe.6G054900_v2.0.a1 Prupe.6G054900_v2.0.a1
pyrus_communis	pycom03g05290 pycom11g05930
rosa_chinensis	RchiOBHm_Chr5g0070191
rosa_laevigata	RLG00000036119
rosa_multiflora	Rmu_sc0002156.1_g000012
rosa_roxburghii	Rroxscaffold_1G00010920
rosa_rugosa	Rorug05G0403900 Rorug05G0403900 Rorug05G0404000 Rorug05G0404100 Rorug05G0404200
rosa_samantha	Rh5AG459700 Rh5BG478200 Rh5CG502200 Rh5DG490100
rosa_wichuraiana	Rw5G042880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	494
AccB1I	GGYRCC	2 cut(s)	549, 627
AccI	GTMKAC	1 cut(s)	279
AciI	CCGC	2 cut(s)	126, 567
AclI	AACGTT	1 cut(s)	604
AclWI	GGATC	2 cut(s)	237, 475
AfiI	CCNNNNNNNGG	2 cut(s)	156, 187
AgeI	ACCGGT	1 cut(s)	149
AgsI	TTSAA	1 cut(s)	558
AjnI	CCWGG	2 cut(s)	263, 634
AloI	GAACNNNNNNTCC	2 cut(s)	63, 95
AluBI	AGCT	3 cut(s)	38, 535, 611
AluI	AGCT	3 cut(s)	38, 535, 611
Alw21I	GWGCWC	2 cut(s)	40, 537
Alw26I	GTCTC	1 cut(s)	182
AlwI	GGATC	2 cut(s)	237, 475
Ama87I	CYCGRG	1 cut(s)	306
ApeKI	GCWGC	1 cut(s)	239
AsiGI	ACCGGT	1 cut(s)	149
AspLEI	GCGC	1 cut(s)	495
AspS9I	GGNCC	1 cut(s)	303
AsuC2I	CCSGG	1 cut(s)	438
AsuHPI	GGTGA	1 cut(s)	399
AvaI	CYCGRG	1 cut(s)	306
AvaII	GGWCC	1 cut(s)	303
BaeGI	GKGCMC	1 cut(s)	552
BanI	GGYRCC	2 cut(s)	549, 627
BanII	GRGCYC	2 cut(s)	40, 537
Bbv12I	GWGCWC	2 cut(s)	40, 537
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	3 cut(s)	58, 463, 539
BciT130I	CCWGG	2 cut(s)	265, 636
BcnI	CCSGG	1 cut(s)	438
BcoDI	GTCTC	1 cut(s)	182
BfaI	CTAG	1 cut(s)	512
BfmI	CTRYAG	1 cut(s)	562
BisI	GCNGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	241
Bme1390I	CCNGG	3 cut(s)	265, 438, 636
Bme18I	GGWCC	1 cut(s)	303
BmeT110I	CYCGRG	1 cut(s)	306
BmgT120I	GGNCC	1 cut(s)	303
BmiI	GGNNCC	4 cut(s)	305, 551, 629, 656
BmrFI	CCNGG	3 cut(s)	265, 438, 636
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
BpuEI	CTTGAG	1 cut(s)	110
BpuMI	CCSGG	1 cut(s)	438
Bsa29I	ATCGAT	1 cut(s)	291
BsaBI	GATNNNNATC	1 cut(s)	228
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	3 cut(s)	181, 264, 437
BsaWI	WCCGGW	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 187
Bse118I	RCCGGY	1 cut(s)	149
Bse1I	ACTGG	1 cut(s)	161
Bse3DI	GCAATG	1 cut(s)	118
Bse8I	GATNNNNATC	1 cut(s)	228
BseBI	CCWGG	2 cut(s)	265, 636
BseCI	ATCGAT	1 cut(s)	291
BseDI	CCNNGG	3 cut(s)	181, 264, 437
BseGI	GGATG	1 cut(s)	447
BseJI	GATNNNNATC	1 cut(s)	228
BseLI	CCNNNNNNNGG	2 cut(s)	156, 187
BseMI	GCAATG	1 cut(s)	118
BseMII	CTCAG	2 cut(s)	74, 550
BseNI	ACTGG	1 cut(s)	161
BseSI	GKGCMC	1 cut(s)	552
BseXI	GCAGC	1 cut(s)	226
BshNI	GGYRCC	2 cut(s)	549, 627
BshTI	ACCGGT	1 cut(s)	149
BshVI	ATCGAT	1 cut(s)	291
BsiHKAI	GWGCWC	2 cut(s)	40, 537
BsiHKCI	CYCGRG	1 cut(s)	306
BsiSI	CCGG	2 cut(s)	150, 437
BslI	CCNNNNNNNGG	2 cut(s)	156, 187
BsmAI	GTCTC	1 cut(s)	182
Bso31I	GGTCTC	1 cut(s)	182
BsoBI	CYCGRG	1 cut(s)	306
Bsp1286I	GDGCHC	3 cut(s)	40, 537, 552
Bsp143I	GATC	2 cut(s)	229, 480
BspACI	CCGC	2 cut(s)	126, 567
BspCNI	CTCAG	2 cut(s)	75, 549
BspDI	ATCGAT	1 cut(s)	291
BspLI	GGNNCC	4 cut(s)	305, 551, 629, 656
BspPI	GGATC	2 cut(s)	237, 475
BspT107I	GGYRCC	2 cut(s)	549, 627
BspTNI	GGTCTC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	118
BsrFI	RCCGGY	1 cut(s)	149
BsrI	ACTGG	1 cut(s)	161
BssAI	RCCGGY	1 cut(s)	149
BssECI	CCNNGG	3 cut(s)	181, 264, 437
BssMI	GATC	2 cut(s)	229, 480
BssT1I	CCWWGG	1 cut(s)	181
Bst2UI	CCWGG	2 cut(s)	265, 636
Bst4CI	ACNGT	3 cut(s)	418, 476, 663
BstDEI	CTNAG	2 cut(s)	83, 536
BstF5I	GGATG	1 cut(s)	447
BstHHI	GCGC	1 cut(s)	495
BstKTI	GATC	2 cut(s)	232, 483
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	2 cut(s)	229, 480
BstMWI	GCNNNNNNNGC	2 cut(s)	532, 627
BstNI	CCWGG	2 cut(s)	265, 636
BstSCI	CCNGG	3 cut(s)	263, 436, 634
BstSFI	CTRYAG	1 cut(s)	562
BstSLI	GKGCMC	1 cut(s)	552
BstV1I	GCAGC	1 cut(s)	226
BstXI	CCANNNNNNTGG	2 cut(s)	354, 651
Bsu15I	ATCGAT	1 cut(s)	291
BsuTUI	ATCGAT	1 cut(s)	291
BtsCI	GGATG	1 cut(s)	447
BtsIMutI	CAGTG	3 cut(s)	154, 423, 481
CfoI	GCGC	1 cut(s)	495
Cfr10I	RCCGGY	1 cut(s)	149
Cfr13I	GGNCC	1 cut(s)	303
ClaI	ATCGAT	1 cut(s)	291
CspAI	ACCGGT	1 cut(s)	149
CviAII	CATG	1 cut(s)	196
CviJI	RGCY	6 cut(s)	38, 88, 239, 535, 611, 621
CviKI_1	RGCY	6 cut(s)	38, 88, 239, 535, 611, 621
DdeI	CTNAG	2 cut(s)	83, 536
DpnI	GATC	2 cut(s)	231, 482
DpnII	GATC	2 cut(s)	229, 480
EciI	GGCGGA	1 cut(s)	115
Ecl136II	GAGCTC	2 cut(s)	38, 535
Eco130I	CCWWGG	1 cut(s)	181
Eco24I	GRGCYC	2 cut(s)	40, 537
Eco31I	GGTCTC	1 cut(s)	182
Eco47I	GGWCC	1 cut(s)	303
Eco53kI	GAGCTC	2 cut(s)	38, 535
Eco88I	CYCGRG	1 cut(s)	306
EcoICRI	GAGCTC	2 cut(s)	38, 535
EcoO109I	RGGNCCY	1 cut(s)	303
EcoRII	CCWGG	2 cut(s)	263, 634
EcoT14I	CCWWGG	1 cut(s)	181
EcoT38I	GRGCYC	2 cut(s)	40, 537
ErhI	CCWWGG	1 cut(s)	181
FaeI	CATG	1 cut(s)	199
FaiI	YATR	8 cut(s)	12, 43, 62, 197, 227, 326, 396, 448
FatI	CATG	1 cut(s)	195
FauI	CCCGC	1 cut(s)	560
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	1 cut(s)	240
FokI	GGATG	1 cut(s)	454
FriOI	GRGCYC	2 cut(s)	40, 537
Fsp4HI	GCNGC	1 cut(s)	240
FspBI	CTAG	1 cut(s)	512
FspI	TGCGCA	1 cut(s)	494
GlaI	GCGC	1 cut(s)	494
GluI	GCNGC	1 cut(s)	240
HapII	CCGG	2 cut(s)	150, 437
HhaI	GCGC	1 cut(s)	495
Hin1II	CATG	1 cut(s)	199
Hin6I	GCGC	1 cut(s)	493
HinP1I	GCGC	1 cut(s)	493
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	3 cut(s)	163, 200, 577
HpaII	CCGG	2 cut(s)	150, 437
HphI	GGTGA	1 cut(s)	399
Hpy166II	GTNNAC	2 cut(s)	52, 280
Hpy188I	TCNGA	5 cut(s)	84, 103, 485, 532, 539
Hpy188III	TCNNGA	2 cut(s)	204, 452
Hpy8I	GTNNAC	2 cut(s)	52, 280
HpyAV	CCTTC	3 cut(s)	62, 564, 641
HpyCH4III	ACNGT	3 cut(s)	418, 476, 663
HpyCH4IV	ACGT	1 cut(s)	604
HpyCH4V	TGCA	3 cut(s)	4, 25, 503
HpyF10VI	GCNNNNNNNGC	2 cut(s)	532, 627
HpyF3I	CTNAG	2 cut(s)	83, 536
HpySE526I	ACGT	1 cut(s)	604
Hsp92II	CATG	1 cut(s)	199
HspAI	GCGC	1 cut(s)	493
Kzo9I	GATC	2 cut(s)	229, 480
LmnI	GCTCC	2 cut(s)	43, 365
Lsp1109I	GCAGC	1 cut(s)	226
MaeI	CTAG	1 cut(s)	512
MaeII	ACGT	1 cut(s)	604
MaeIII	GTNAC	3 cut(s)	16, 152, 164
MalI	GATC	2 cut(s)	231, 482
MboI	GATC	2 cut(s)	229, 480
MboII	GAAGA	1 cut(s)	673
MhlI	GDGCHC	3 cut(s)	40, 537, 552
MluCI	AATT	1 cut(s)	271
MlyI	GAGTC	2 cut(s)	172, 586
MnlI	CCTC	5 cut(s)	78, 85, 167, 200, 609
MseI	TTAA	1 cut(s)	144
MslI	CAYNNNNRTG	2 cut(s)	59, 521
MspA1I	CMGCKG	2 cut(s)	567, 611
MspI	CCGG	2 cut(s)	150, 437
MspR9I	CCNGG	3 cut(s)	265, 438, 636
MvaI	CCWGG	2 cut(s)	265, 636
MwoI	GCNNNNNNNGC	2 cut(s)	532, 627
NciI	CCSGG	1 cut(s)	438
NdeII	GATC	2 cut(s)	229, 480
NlaIII	CATG	1 cut(s)	199
NlaIV	GGNNCC	4 cut(s)	305, 551, 629, 656
NmuCI	GTSAC	2 cut(s)	152, 164
NsbI	TGCGCA	1 cut(s)	494
PfeI	GAWTC	1 cut(s)	200
PfoI	TCCNGGA	1 cut(s)	634
PinAI	ACCGGT	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	241
PleI	GAGTC	2 cut(s)	171, 585
PpsI	GAGTC	2 cut(s)	171, 585
PpuMI	RGGWCCY	1 cut(s)	303
Psp124BI	GAGCTC	2 cut(s)	40, 537
Psp1406I	AACGTT	1 cut(s)	604
Psp5II	RGGWCCY	1 cut(s)	303
Psp6I	CCWGG	2 cut(s)	263, 634
PspGI	CCWGG	2 cut(s)	263, 634
PspN4I	GGNNCC	4 cut(s)	305, 551, 629, 656
PspPI	GGNCC	1 cut(s)	303
PspPPI	RGGWCCY	1 cut(s)	303
PvuII	CAGCTG	1 cut(s)	611
RseI	CAYNNNNRTG	2 cut(s)	59, 521
SacI	GAGCTC	2 cut(s)	40, 537
SalI	GTCGAC	1 cut(s)	278
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	2 cut(s)	229, 480
Sau96I	GGNCC	1 cut(s)	303
SchI	GAGTC	2 cut(s)	172, 586
ScrFI	CCNGG	3 cut(s)	265, 438, 636
SduI	GDGCHC	3 cut(s)	40, 537, 552
SetI	ASST	8 cut(s)	40, 178, 266, 376, 537, 607, 613, 677
SfcI	CTRYAG	1 cut(s)	562
SinI	GGWCC	1 cut(s)	303
SmiMI	CAYNNNNRTG	2 cut(s)	59, 521
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	1 cut(s)	271
SsiI	CCGC	2 cut(s)	126, 567
SspI	AATATT	1 cut(s)	215
SspMI	CTAG	1 cut(s)	512
SstI	GAGCTC	2 cut(s)	40, 537
StyD4I	CCNGG	3 cut(s)	263, 436, 634
StyI	CCWWGG	1 cut(s)	181
TaaI	ACNGT	3 cut(s)	418, 476, 663
TaiI	ACGT	1 cut(s)	607
TaqI	TCGA	2 cut(s)	279, 291
TasI	AATT	1 cut(s)	271
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TscAI	CASTG	3 cut(s)	161, 423, 481
TseFI	GTSAC	2 cut(s)	152, 164
TseI	GCWGC	1 cut(s)	239
Tsp45I	GTSAC	2 cut(s)	152, 164
TspDTI	ATGAA	1 cut(s)	366
TspRI	CASTG	3 cut(s)	161, 423, 481
VpaK11BI	GGWCC	1 cut(s)	303
XmiI	GTMKAC	1 cut(s)	279
XspI	CTAG	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.