Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006318

Physical Location & Seq

Genomic Coordinates Forward (+)

78790247 .. 78793846

Gene Structure 3600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG459700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGCCCTTTTGTGTTGCTTAGCTATTCTTTGTCTAGCTCTGGTTCAATCTTCCCACTCTGCTGTGATAATGAGCATGAGGAACCACCACAAAACCCACCACTATAGCTCAGGGTCAATGATTCACACCAACCAAACCACTTGTGCAATGTTTGCAGGCACTTGGGTCCAAGATGACTCTTACCCAATGTACCAATCTTCTGAGTGCCCTTTAATCATAGACCCTGAGTTCAATTGCCAAATGTATGGGCGCCCAGATTCTGAGTACCTCAAATATAGATGGAGACCCCTCAATTGTGAACTCCCAAGGTTCAATGGGGTTGAGTTTTTGCTCAGAATGAAAGGGAAAACAGTGATGTTTGTAGGTGATTCACTTGGGAGGAATCAATGGGAGTCTTTGGTTTGCTTGATATACTCTGCAGCTCCCCAAACCCAAACCCAAATGGTGAAAGGAGATCCACTCTCAACATTCAACTTCTTGGACTATGGTGTAACCCTGCAATACTACCGAGCTCCATATCTGGTGGACATTGATATGATGGAAGGAAAGAGAGTTCTGAGGCTTGAGGACATATCAGAGAACAGCAATGCGTGGCGTTCCGCCGATGTGCTGTCGTTTAACACCGGTCACTGGTGGAGTCACACCGGAGGTCTCCAAGGGTGGGATTACATGGAATCAGGAGGAAAATATTACAAAGATATGGATCGTTTGGCTGCTTTGGAGAAAGGAATGAGAACCTGGGCAAATTGGGTCGACAAAAACATCGATACCACAAGGACCCGAGTTTTCTTTCTCTCCATATCTCCCACACATTACGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0008150 GO:0008374 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

273

Amino Acids

31.55

Weight (kDa)

6.3

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	47 - 100	8.1e-21	PMR5 N terminal Domain
PC-Esterase	PF13839	101 - 273	3.6e-57	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58600 AT5G58600
fragaria_vesca	FvH4_3g38960 FvH4_3g38960 FvH4_3g38960 FvH4_3g38960 FvH4_3g38960
malus_domestica	MD03G1066200.v1.1 MD11G1070900.v1.1
prunus_persica	Prupe.6G054900_v2.0.a1 Prupe.6G054900_v2.0.a1
pyrus_communis	pycom03g05290 pycom11g05930
rosa_chinensis	RchiOBHm_Chr5g0070191
rosa_laevigata	RLG00000036119
rosa_multiflora	Rmu_sc0002156.1_g000012
rosa_roxburghii	Rroxscaffold_1G00010920
rosa_rugosa	Rorug05G0403900 Rorug05G0403900 Rorug05G0404000 Rorug05G0404100 Rorug05G0404200
rosa_samantha	Rh5AG459700 Rh5BG478200 Rh5CG502200 Rh5DG490100
rosa_wichuraiana	Rw5G042880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	249
AccI	GTMKAC	1 cut(s)	753
AciI	CCGC	1 cut(s)	600
AclWI	GGATC	2 cut(s)	449, 711
AcyI	GRCGYC	1 cut(s)	250
AfaI	GTAC	2 cut(s)	191, 266
AfiI	CCNNNNNNNGG	2 cut(s)	630, 661
AgeI	ACCGGT	1 cut(s)	623
AgsI	TTSAA	4 cut(s)	47, 232, 313, 472
AjnI	CCWGG	1 cut(s)	737
AloI	GAACNNNNNNTCC	2 cut(s)	537, 569
AluBI	AGCT	5 cut(s)	23, 38, 108, 422, 512
AluI	AGCT	5 cut(s)	23, 38, 108, 422, 512
Alw21I	GWGCWC	1 cut(s)	514
Alw26I	GTCTC	2 cut(s)	277, 656
AlwI	GGATC	2 cut(s)	449, 711
AlwNI	CAGNNNCTG	1 cut(s)	260
Ama87I	CYCGRG	1 cut(s)	780
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	419, 713
AsiGI	ACCGGT	1 cut(s)	623
AspLEI	GCGC	1 cut(s)	252
AspS9I	GGNCC	3 cut(s)	4, 166, 777
AsuHPI	GGTGA	2 cut(s)	377, 457
AvaI	CYCGRG	1 cut(s)	780
AvaII	GGWCC	2 cut(s)	166, 777
BaeGI	GKGCMC	1 cut(s)	209
BanI	GGYRCC	1 cut(s)	249
BanII	GRGCYC	1 cut(s)	514
Bbv12I	GWGCWC	1 cut(s)	514
BbvI	GCAGC	2 cut(s)	431, 700
BccI	CCATC	2 cut(s)	273, 532
BciT130I	CCWGG	1 cut(s)	739
BcoDI	GTCTC	2 cut(s)	277, 656
BfaI	CTAG	1 cut(s)	35
BfmI	CTRYAG	2 cut(s)	103, 417
BfoI	RGCGCY	1 cut(s)	253
BisI	GCNGC	2 cut(s)	420, 714
BlpI	GCTNAGC	1 cut(s)	19
BlsI	GCNGC	2 cut(s)	421, 715
Bme1390I	CCNGG	1 cut(s)	739
Bme18I	GGWCC	2 cut(s)	166, 777
BmeT110I	CYCGRG	1 cut(s)	780
BmgT120I	GGNCC	3 cut(s)	4, 166, 777
BmiI	GGNNCC	4 cut(s)	83, 167, 251, 779
BmrFI	CCNGG	1 cut(s)	739
BplI	GAGNNNNNCTC	2 cut(s)	444, 476
Bpu10I	CCTNAGC	1 cut(s)	109
Bpu1102I	GCTNAGC	1 cut(s)	19
BpuEI	CTTGAG	1 cut(s)	584
Bsa29I	ATCGAT	1 cut(s)	765
BsaBI	GATNNNNATC	1 cut(s)	702
BsaHI	GRCGYC	1 cut(s)	250
BsaI	GGTCTC	2 cut(s)	277, 656
BsaJI	CCNNGG	3 cut(s)	305, 655, 738
BsaWI	WCCGGW	2 cut(s)	623, 644
Bsc4I	CCNNNNNNNGG	2 cut(s)	630, 661
Bse118I	RCCGGY	1 cut(s)	623
Bse1I	ACTGG	1 cut(s)	635
Bse3DI	GCAATG	2 cut(s)	153, 592
Bse8I	GATNNNNATC	1 cut(s)	702
BseBI	CCWGG	1 cut(s)	739
BseCI	ATCGAT	1 cut(s)	765
BseDI	CCNNGG	3 cut(s)	305, 655, 738
BseJI	GATNNNNATC	1 cut(s)	702
BseLI	CCNNNNNNNGG	2 cut(s)	630, 661
BseMI	GCAATG	2 cut(s)	153, 592
BseMII	CTCAG	6 cut(s)	123, 192, 216, 252, 346, 548
BseNI	ACTGG	1 cut(s)	635
BseSI	GKGCMC	1 cut(s)	209
BseXI	GCAGC	2 cut(s)	431, 700
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	249
BshTI	ACCGGT	1 cut(s)	623
BshVI	ATCGAT	1 cut(s)	765
BsiHKAI	GWGCWC	1 cut(s)	514
BsiHKCI	CYCGRG	1 cut(s)	780
BsiSI	CCGG	2 cut(s)	624, 645
BslI	CCNNNNNNNGG	2 cut(s)	630, 661
BsmAI	GTCTC	2 cut(s)	277, 656
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	2 cut(s)	277, 656
BsoBI	CYCGRG	1 cut(s)	780
Bsp1286I	GDGCHC	2 cut(s)	209, 514
Bsp143I	GATC	2 cut(s)	454, 703
Bsp1720I	GCTNAGC	1 cut(s)	19
BspACI	CCGC	1 cut(s)	600
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	6 cut(s)	122, 193, 217, 253, 345, 549
BspDI	ATCGAT	1 cut(s)	765
BspLI	GGNNCC	4 cut(s)	83, 167, 251, 779
BspMAI	CTGCAG	1 cut(s)	421
BspPI	GGATC	2 cut(s)	449, 711
BspT107I	GGYRCC	1 cut(s)	249
BspTNI	GGTCTC	2 cut(s)	277, 656
BsrDI	GCAATG	2 cut(s)	153, 592
BsrFI	RCCGGY	1 cut(s)	623
BsrI	ACTGG	1 cut(s)	635
BssAI	RCCGGY	1 cut(s)	623
BssECI	CCNNGG	3 cut(s)	305, 655, 738
BssMI	GATC	2 cut(s)	454, 703
BssNI	GRCGYC	1 cut(s)	250
BssT1I	CCWWGG	2 cut(s)	305, 655
Bst2UI	CCWGG	1 cut(s)	739
Bst4CI	ACNGT	1 cut(s)	352
BstACI	GRCGYC	1 cut(s)	250
BstAPI	GCANNNNNTGC	1 cut(s)	152
BstC8I	GCNNGC	1 cut(s)	157
BstDEI	CTNAG	7 cut(s)	19, 109, 201, 225, 261, 332, 557
BstH2I	RGCGCY	1 cut(s)	253
BstHHI	GCGC	1 cut(s)	252
BstKTI	GATC	2 cut(s)	457, 706
BstMAI	GTCTC	2 cut(s)	277, 656
BstMBI	GATC	2 cut(s)	454, 703
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstNI	CCWGG	1 cut(s)	739
BstSCI	CCNGG	1 cut(s)	737
BstSFI	CTRYAG	2 cut(s)	103, 417
BstSLI	GKGCMC	1 cut(s)	209
BstV1I	GCAGC	2 cut(s)	431, 700
BstX2I	RGATCY	1 cut(s)	454
BstXI	CCANNNNNNTGG	1 cut(s)	245
BstYI	RGATCY	1 cut(s)	454
Bsu15I	ATCGAT	1 cut(s)	765
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	765
BtsIMutI	CAGTG	2 cut(s)	357, 628
Cac8I	GCNNGC	1 cut(s)	157
CaiI	CAGNNNCTG	1 cut(s)	260
CfoI	GCGC	1 cut(s)	252
Cfr10I	RCCGGY	1 cut(s)	623
Cfr13I	GGNCC	3 cut(s)	4, 166, 777
ClaI	ATCGAT	1 cut(s)	765
Csp6I	GTAC	2 cut(s)	190, 265
CspAI	ACCGGT	1 cut(s)	623
CviAII	CATG	2 cut(s)	76, 670
CviJI	RGCY	8 cut(s)	5, 23, 38, 108, 422, 512, 562, 713
CviKI_1	RGCY	8 cut(s)	5, 23, 38, 108, 422, 512, 562, 713
CviQI	GTAC	2 cut(s)	190, 265
DdeI	CTNAG	7 cut(s)	19, 109, 201, 225, 261, 332, 557
DinI	GGCGCC	1 cut(s)	251
DpnI	GATC	2 cut(s)	456, 705
DpnII	GATC	2 cut(s)	454, 703
EciI	GGCGGA	1 cut(s)	589
Ecl136II	GAGCTC	1 cut(s)	512
Eco130I	CCWWGG	2 cut(s)	305, 655
Eco24I	GRGCYC	1 cut(s)	514
Eco31I	GGTCTC	2 cut(s)	277, 656
Eco47I	GGWCC	2 cut(s)	166, 777
Eco53kI	GAGCTC	1 cut(s)	512
Eco88I	CYCGRG	1 cut(s)	780
EcoICRI	GAGCTC	1 cut(s)	512
EcoO109I	RGGNCCY	1 cut(s)	777
EcoRII	CCWGG	1 cut(s)	737
EcoT14I	CCWWGG	2 cut(s)	305, 655
EcoT38I	GRGCYC	1 cut(s)	514
EgeI	GGCGCC	1 cut(s)	251
EheI	GGCGCC	1 cut(s)	251
ErhI	CCWWGG	2 cut(s)	305, 655
FaeI	CATG	2 cut(s)	79, 673
FatI	CATG	2 cut(s)	75, 669
FblI	GTMKAC	1 cut(s)	753
Fnu4HI	GCNGC	2 cut(s)	420, 714
FriOI	GRGCYC	1 cut(s)	514
Fsp4HI	GCNGC	2 cut(s)	420, 714
FspBI	CTAG	1 cut(s)	35
GlaI	GCGC	1 cut(s)	251
GluI	GCNGC	2 cut(s)	420, 714
HaeII	RGCGCY	1 cut(s)	253
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	624, 645
HhaI	GCGC	1 cut(s)	252
Hin1I	GRCGYC	1 cut(s)	250
Hin1II	CATG	2 cut(s)	79, 673
Hin6I	GCGC	1 cut(s)	250
HinP1I	GCGC	1 cut(s)	250
HincII	GTYRAC	1 cut(s)	754
HindII	GTYRAC	1 cut(s)	754
HinfI	GANTC	8 cut(s)	121, 176, 257, 368, 382, 392, 637, 674
HpaII	CCGG	2 cut(s)	624, 645
HphI	GGTGA	2 cut(s)	377, 457
Hpy166II	GTNNAC	3 cut(s)	299, 526, 754
Hpy188I	TCNGA	5 cut(s)	202, 262, 335, 558, 577
Hpy188III	TCNNGA	1 cut(s)	678
Hpy8I	GTNNAC	3 cut(s)	299, 526, 754
HpyAV	CCTTC	1 cut(s)	536
HpyCH4III	ACNGT	1 cut(s)	352
HpyCH4V	TGCA	4 cut(s)	146, 155, 419, 499
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	7 cut(s)	19, 109, 201, 225, 261, 332, 557
Hsp92I	GRCGYC	1 cut(s)	250
Hsp92II	CATG	2 cut(s)	79, 673
HspAI	GCGC	1 cut(s)	250
KasI	GGCGCC	1 cut(s)	249
Kzo9I	GATC	2 cut(s)	454, 703
LmnI	GCTCC	2 cut(s)	427, 517
Lsp1109I	GCAGC	2 cut(s)	431, 700
MaeI	CTAG	1 cut(s)	35
MaeIII	GTNAC	3 cut(s)	490, 626, 638
MalI	GATC	2 cut(s)	456, 705
MboI	GATC	2 cut(s)	454, 703
MboII	GAAGA	2 cut(s)	42, 189
MfeI	CAATTG	2 cut(s)	232, 292
MflI	RGATCY	1 cut(s)	454
MhlI	GDGCHC	2 cut(s)	209, 514
MluCI	AATT	3 cut(s)	232, 292, 745
Mly113I	GGCGCC	1 cut(s)	250
MlyI	GAGTC	3 cut(s)	170, 401, 646
MnlI	CCTC	8 cut(s)	72, 278, 299, 372, 552, 559, 641, 674
MseI	TTAA	2 cut(s)	212, 618
MslI	CAYNNNNRTG	1 cut(s)	533
MspI	CCGG	2 cut(s)	624, 645
MspR9I	CCNGG	1 cut(s)	739
MunI	CAATTG	2 cut(s)	232, 292
MvaI	CCWGG	1 cut(s)	739
MwoI	GCNNNNNNNGC	1 cut(s)	152
NarI	GGCGCC	1 cut(s)	250
NdeII	GATC	2 cut(s)	454, 703
NlaIII	CATG	2 cut(s)	79, 673
NlaIV	GGNNCC	4 cut(s)	83, 167, 251, 779
NmuCI	GTSAC	2 cut(s)	626, 638
PfeI	GAWTC	5 cut(s)	121, 257, 368, 382, 674
PinAI	ACCGGT	1 cut(s)	623
PkrI	GCNGC	2 cut(s)	421, 715
PleI	GAGTC	3 cut(s)	170, 400, 645
PluTI	GGCGCC	1 cut(s)	253
PpsI	GAGTC	3 cut(s)	170, 400, 645
PpuMI	RGGWCCY	1 cut(s)	777
Psp124BI	GAGCTC	1 cut(s)	514
Psp5II	RGGWCCY	1 cut(s)	777
Psp6I	CCWGG	1 cut(s)	737
PspGI	CCWGG	1 cut(s)	737
PspN4I	GGNNCC	4 cut(s)	83, 167, 251, 779
PspPI	GGNCC	3 cut(s)	4, 166, 777
PspPPI	RGGWCCY	1 cut(s)	777
PstI	CTGCAG	1 cut(s)	421
PstNI	CAGNNNCTG	1 cut(s)	260
PsuI	RGATCY	1 cut(s)	454
RsaI	GTAC	2 cut(s)	191, 266
RsaNI	GTAC	2 cut(s)	190, 265
RseI	CAYNNNNRTG	1 cut(s)	533
SacI	GAGCTC	1 cut(s)	514
SalI	GTCGAC	1 cut(s)	752
SaqAI	TTAA	2 cut(s)	212, 618
SatI	GCNGC	2 cut(s)	420, 714
Sau3AI	GATC	2 cut(s)	454, 703
Sau96I	GGNCC	3 cut(s)	4, 166, 777
SchI	GAGTC	3 cut(s)	170, 401, 646
ScrFI	CCNGG	1 cut(s)	739
SduI	GDGCHC	2 cut(s)	209, 514
SfcI	CTRYAG	2 cut(s)	103, 417
SfoI	GGCGCC	1 cut(s)	251
SinI	GGWCC	2 cut(s)	166, 777
SmiMI	CAYNNNNRTG	1 cut(s)	533
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
Sse9I	AATT	3 cut(s)	232, 292, 745
SsiI	CCGC	1 cut(s)	600
SspDI	GGCGCC	1 cut(s)	249
SspI	AATATT	1 cut(s)	689
SspMI	CTAG	1 cut(s)	35
SstI	GAGCTC	1 cut(s)	514
StyD4I	CCNGG	1 cut(s)	737
StyI	CCWWGG	2 cut(s)	305, 655
TaaI	ACNGT	1 cut(s)	352
TaqI	TCGA	2 cut(s)	753, 765
TasI	AATT	3 cut(s)	232, 292, 745
TfiI	GAWTC	5 cut(s)	121, 257, 368, 382, 674
Tru1I	TTAA	2 cut(s)	212, 618
Tru9I	TTAA	2 cut(s)	212, 618
TscAI	CASTG	2 cut(s)	357, 635
TseFI	GTSAC	2 cut(s)	626, 638
TseI	GCWGC	2 cut(s)	419, 713
Tsp45I	GTSAC	2 cut(s)	626, 638
TspDTI	ATGAA	1 cut(s)	353
TspRI	CASTG	2 cut(s)	357, 635
VpaK11BI	GGWCC	2 cut(s)	166, 777
XmiI	GTMKAC	1 cut(s)	753
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.