Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0006318

Physical Location & Seq

Genomic Coordinates Forward (+)

77019851 .. 77022508

Gene Structure 2658 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG490100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGAGGAACCACCACAAAACCCACCACTATAGCTCAGGGCCAATGATCCACACCAACCAAACCACTTGTGCAATGTTTGCAGGCACTTGGGTCCAAGATGACTCTTACCCAATGTACCAATCTTCTGAGTGCCCTTTAATCATAGACCCTGAGTTCAATTGCCAAATGTATGGGCGCCCAGATTCTGAGTACCTCAAATATAGATGGAGACCCCTCAATTGTGAACTCCCAAGGTTCAATGGGGTTGAGTTTTTGCTCAGAATGAAAGGGAAAACAGTGATGTTTGTAGGTGATTCACTTGGGAGGAATCAATGGGAGTCTTTGGTTTGCTTGATATACTCTGCAGCTCCCCAAACCCAAACCCAAATGGTGAAGGGAGATCCACTCTCAACATTCAACTTCTTGGACTATGGTGTAACCCTGCAATACTACCGAGCTCCATATCTGGTGGACATTGATATGATGGAAGGAAAGAGAGTTCTGAGGCTTGAGGACATATCGGAGAACAGCAATGCGTGGCGTTCCGCCGATGTGCTGTCGTTTAACACCGGTCACTGGTGGAGTCACACAGGAGGTCTCCAAGGGTGGGATTACATGGAATCAGGAGGAAAATATTACAAAGATATGGATCGTTTGGCTGCTTTGGAGAAAGGAATGAGAACCTGGGCAAATTGGGTCGACAAAAACATCGATACCACAAGGACCCGAGTTTTCTTTCTCTCCATATCTCCCACACATTACGACCCAAATGAATGGAATGGGGGAGCAACACCTACAACCACCAAGAACTGCTATGGAGAAACATCACCGATGACAGTGAGTGGGATAACTTATCCGGGGACGACATATCCAGACCAGATGAGAGTGATGGACAGTGTGATCCGAGAAATGCGCAACCCTGCATTTCTGCTAGACATTACAATGCTTTCAGAGCTCAGAAAAGATGGGCACCCTTCAATCTACAGCGGGGATTTGAGTCCTGCACAGAGAGCGAATCCTCAACGTTCAGCTGATTGTAGCCATTGGTGCCTTCCTGGATTGCCAGACACTTGGAACCAACTGTTTTACACTACCTTGCTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0008150 GO:0008374 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

361

Amino Acids

41.6

Weight (kDa)

5.93

Isoelectric Point (pI)

36.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	22 - 75	1.3e-20	PMR5 N terminal Domain
PC-Esterase	PF13839	76 - 357	7.3e-93	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58600 AT5G58600
fragaria_vesca	FvH4_3g38960 FvH4_3g38960 FvH4_3g38960 FvH4_3g38960 FvH4_3g38960
malus_domestica	MD03G1066200.v1.1 MD11G1070900.v1.1
prunus_persica	Prupe.6G054900_v2.0.a1 Prupe.6G054900_v2.0.a1
pyrus_communis	pycom03g05290 pycom11g05930
rosa_chinensis	RchiOBHm_Chr5g0070191
rosa_laevigata	RLG00000036119
rosa_multiflora	Rmu_sc0002156.1_g000012
rosa_roxburghii	Rroxscaffold_1G00010920
rosa_rugosa	Rorug05G0403900 Rorug05G0403900 Rorug05G0404000 Rorug05G0404100 Rorug05G0404200
rosa_samantha	Rh5AG459700 Rh5BG478200 Rh5CG502200 Rh5DG490100
rosa_wichuraiana	Rw5G042880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	893
AccB1I	GGYRCC	3 cut(s)	174, 948, 1026
AccI	GTMKAC	1 cut(s)	678
AciI	CCGC	2 cut(s)	525, 966
AclI	AACGTT	1 cut(s)	1003
AclWI	GGATC	4 cut(s)	40, 374, 636, 874
AcyI	GRCGYC	1 cut(s)	175
AfaI	GTAC	2 cut(s)	116, 191
AfiI	CCNNNNNNNGG	2 cut(s)	555, 586
AgeI	ACCGGT	1 cut(s)	548
AgsI	TTSAA	4 cut(s)	157, 238, 397, 957
AjnI	CCWGG	2 cut(s)	662, 1033
AloI	GAACNNNNNNTCC	2 cut(s)	462, 494
AluBI	AGCT	5 cut(s)	33, 347, 437, 934, 1010
AluI	AGCT	5 cut(s)	33, 347, 437, 934, 1010
Alw21I	GWGCWC	2 cut(s)	439, 936
Alw26I	GTCTC	2 cut(s)	202, 581
AlwI	GGATC	4 cut(s)	40, 374, 636, 874
AlwNI	CAGNNNCTG	1 cut(s)	185
Ama87I	CYCGRG	1 cut(s)	705
AoxI	GGCC	1 cut(s)	38
ApeKI	GCWGC	2 cut(s)	344, 638
AsiGI	ACCGGT	1 cut(s)	548
AspLEI	GCGC	2 cut(s)	177, 894
AspS9I	GGNCC	3 cut(s)	38, 91, 702
AsuC2I	CCSGG	1 cut(s)	837
AsuHPI	GGTGA	3 cut(s)	302, 382, 798
AvaI	CYCGRG	1 cut(s)	705
AvaII	GGWCC	2 cut(s)	91, 702
BaeGI	GKGCMC	2 cut(s)	134, 951
BanI	GGYRCC	3 cut(s)	174, 948, 1026
BanII	GRGCYC	2 cut(s)	439, 936
Bbv12I	GWGCWC	2 cut(s)	439, 936
BbvI	GCAGC	2 cut(s)	356, 625
BccI	CCATC	4 cut(s)	198, 457, 862, 938
BciT130I	CCWGG	2 cut(s)	664, 1035
BcnI	CCSGG	1 cut(s)	837
BcoDI	GTCTC	2 cut(s)	202, 581
BfaI	CTAG	1 cut(s)	911
BfmI	CTRYAG	3 cut(s)	28, 342, 961
BfoI	RGCGCY	1 cut(s)	178
BisI	GCNGC	2 cut(s)	345, 639
BlsI	GCNGC	2 cut(s)	346, 640
Bme1390I	CCNGG	3 cut(s)	664, 837, 1035
Bme18I	GGWCC	2 cut(s)	91, 702
BmeT110I	CYCGRG	1 cut(s)	705
BmgT120I	GGNCC	3 cut(s)	38, 91, 702
BmiI	GGNNCC	7 cut(s)	8, 92, 176, 704, 950, 1028, 1055
BmrFI	CCNGG	3 cut(s)	664, 837, 1035
BplI	GAGNNNNNCTC	2 cut(s)	369, 401
Bpu10I	CCTNAGC	1 cut(s)	34
BpuEI	CTTGAG	1 cut(s)	509
BpuMI	CCSGG	1 cut(s)	837
Bsa29I	ATCGAT	1 cut(s)	690
BsaBI	GATNNNNATC	1 cut(s)	627
BsaHI	GRCGYC	1 cut(s)	175
BsaI	GGTCTC	2 cut(s)	202, 581
BsaJI	CCNNGG	4 cut(s)	230, 580, 663, 836
BsaWI	WCCGGW	1 cut(s)	548
Bsc4I	CCNNNNNNNGG	2 cut(s)	555, 586
Bse118I	RCCGGY	1 cut(s)	548
Bse1I	ACTGG	1 cut(s)	560
Bse3DI	GCAATG	2 cut(s)	78, 517
Bse8I	GATNNNNATC	1 cut(s)	627
BseBI	CCWGG	2 cut(s)	664, 1035
BseCI	ATCGAT	1 cut(s)	690
BseDI	CCNNGG	4 cut(s)	230, 580, 663, 836
BseJI	GATNNNNATC	1 cut(s)	627
BseLI	CCNNNNNNNGG	2 cut(s)	555, 586
BseMI	GCAATG	2 cut(s)	78, 517
BseMII	CTCAG	7 cut(s)	48, 117, 141, 177, 271, 473, 949
BseNI	ACTGG	1 cut(s)	560
BseSI	GKGCMC	2 cut(s)	134, 951
BseXI	GCAGC	2 cut(s)	356, 625
BsgI	GTGCAG	1 cut(s)	966
BshFI	GGCC	1 cut(s)	40
BshNI	GGYRCC	3 cut(s)	174, 948, 1026
BshTI	ACCGGT	1 cut(s)	548
BshVI	ATCGAT	1 cut(s)	690
BsiHKAI	GWGCWC	2 cut(s)	439, 936
BsiHKCI	CYCGRG	1 cut(s)	705
BsiSI	CCGG	2 cut(s)	549, 836
BslFI	GGGAC	1 cut(s)	853
BslI	CCNNNNNNNGG	2 cut(s)	555, 586
BsmAI	GTCTC	2 cut(s)	202, 581
BsmFI	GGGAC	1 cut(s)	853
BsnI	GGCC	1 cut(s)	40
Bso31I	GGTCTC	2 cut(s)	202, 581
BsoBI	CYCGRG	1 cut(s)	705
Bsp1286I	GDGCHC	4 cut(s)	134, 439, 936, 951
Bsp143I	GATC	4 cut(s)	45, 379, 628, 879
BspACI	CCGC	2 cut(s)	525, 966
BspANI	GGCC	1 cut(s)	40
BspCNI	CTCAG	7 cut(s)	47, 118, 142, 178, 270, 474, 948
BspDI	ATCGAT	1 cut(s)	690
BspLI	GGNNCC	7 cut(s)	8, 92, 176, 704, 950, 1028, 1055
BspMAI	CTGCAG	1 cut(s)	346
BspPI	GGATC	4 cut(s)	40, 374, 636, 874
BspT107I	GGYRCC	3 cut(s)	174, 948, 1026
BspTNI	GGTCTC	2 cut(s)	202, 581
BsrDI	GCAATG	2 cut(s)	78, 517
BsrFI	RCCGGY	1 cut(s)	548
BsrI	ACTGG	1 cut(s)	560
BssAI	RCCGGY	1 cut(s)	548
BssECI	CCNNGG	4 cut(s)	230, 580, 663, 836
BssMI	GATC	4 cut(s)	45, 379, 628, 879
BssNI	GRCGYC	1 cut(s)	175
BssT1I	CCWWGG	2 cut(s)	230, 580
Bst2UI	CCWGG	2 cut(s)	664, 1035
Bst4CI	ACNGT	4 cut(s)	277, 817, 875, 1062
BstACI	GRCGYC	1 cut(s)	175
BstAPI	GCANNNNNTGC	1 cut(s)	77
BstC8I	GCNNGC	1 cut(s)	82
BstDEI	CTNAG	7 cut(s)	34, 126, 150, 186, 257, 482, 935
BstH2I	RGCGCY	1 cut(s)	178
BstHHI	GCGC	2 cut(s)	177, 894
BstKTI	GATC	4 cut(s)	48, 382, 631, 882
BstMAI	GTCTC	2 cut(s)	202, 581
BstMBI	GATC	4 cut(s)	45, 379, 628, 879
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 931, 989, 1026
BstNI	CCWGG	2 cut(s)	664, 1035
BstSCI	CCNGG	3 cut(s)	662, 835, 1033
BstSFI	CTRYAG	3 cut(s)	28, 342, 961
BstSLI	GKGCMC	2 cut(s)	134, 951
BstV1I	GCAGC	2 cut(s)	356, 625
BstX2I	RGATCY	1 cut(s)	379
BstXI	CCANNNNNNTGG	3 cut(s)	170, 753, 1050
BstYI	RGATCY	1 cut(s)	379
Bsu15I	ATCGAT	1 cut(s)	690
BsuRI	GGCC	1 cut(s)	40
BsuTUI	ATCGAT	1 cut(s)	690
BtsIMutI	CAGTG	4 cut(s)	282, 553, 822, 880
Cac8I	GCNNGC	1 cut(s)	82
CaiI	CAGNNNCTG	1 cut(s)	185
CfoI	GCGC	2 cut(s)	177, 894
Cfr10I	RCCGGY	1 cut(s)	548
Cfr13I	GGNCC	3 cut(s)	38, 91, 702
ClaI	ATCGAT	1 cut(s)	690
Csp6I	GTAC	2 cut(s)	115, 190
CspAI	ACCGGT	1 cut(s)	548
CviAII	CATG	1 cut(s)	595
CviJI	RGCY	9 cut(s)	33, 40, 347, 437, 487, 638, 934, 1010, 1020
CviKI_1	RGCY	9 cut(s)	33, 40, 347, 437, 487, 638, 934, 1010, 1020
CviQI	GTAC	2 cut(s)	115, 190
DdeI	CTNAG	7 cut(s)	34, 126, 150, 186, 257, 482, 935
DinI	GGCGCC	1 cut(s)	176
DpnI	GATC	4 cut(s)	47, 381, 630, 881
DpnII	GATC	4 cut(s)	45, 379, 628, 879
EciI	GGCGGA	1 cut(s)	514
Ecl136II	GAGCTC	2 cut(s)	437, 934
Eco130I	CCWWGG	2 cut(s)	230, 580
Eco24I	GRGCYC	2 cut(s)	439, 936
Eco31I	GGTCTC	2 cut(s)	202, 581
Eco47I	GGWCC	2 cut(s)	91, 702
Eco53kI	GAGCTC	2 cut(s)	437, 934
Eco88I	CYCGRG	1 cut(s)	705
EcoICRI	GAGCTC	2 cut(s)	437, 934
EcoO109I	RGGNCCY	1 cut(s)	702
EcoRII	CCWGG	2 cut(s)	662, 1033
EcoT14I	CCWWGG	2 cut(s)	230, 580
EcoT38I	GRGCYC	2 cut(s)	439, 936
EgeI	GGCGCC	1 cut(s)	176
EheI	GGCGCC	1 cut(s)	176
ErhI	CCWWGG	2 cut(s)	230, 580
FaeI	CATG	1 cut(s)	598
FaqI	GGGAC	1 cut(s)	853
FatI	CATG	1 cut(s)	594
FauI	CCCGC	1 cut(s)	959
FblI	GTMKAC	1 cut(s)	678
Fnu4HI	GCNGC	2 cut(s)	345, 639
FriOI	GRGCYC	2 cut(s)	439, 936
Fsp4HI	GCNGC	2 cut(s)	345, 639
FspBI	CTAG	1 cut(s)	911
FspI	TGCGCA	1 cut(s)	893
GlaI	GCGC	2 cut(s)	176, 893
GluI	GCNGC	2 cut(s)	345, 639
HaeII	RGCGCY	1 cut(s)	178
HaeIII	GGCC	1 cut(s)	40
HapII	CCGG	2 cut(s)	549, 836
HhaI	GCGC	2 cut(s)	177, 894
Hin1I	GRCGYC	1 cut(s)	175
Hin1II	CATG	1 cut(s)	598
Hin6I	GCGC	2 cut(s)	175, 892
HinP1I	GCGC	2 cut(s)	175, 892
HincII	GTYRAC	1 cut(s)	679
HindII	GTYRAC	1 cut(s)	679
HinfI	GANTC	9 cut(s)	101, 182, 293, 307, 317, 562, 599, 976, 994
HpaII	CCGG	2 cut(s)	549, 836
HphI	GGTGA	3 cut(s)	302, 382, 798
Hpy166II	GTNNAC	3 cut(s)	224, 451, 679
Hpy188I	TCNGA	8 cut(s)	127, 187, 260, 483, 502, 884, 931, 938
Hpy188III	TCNNGA	2 cut(s)	603, 851
Hpy8I	GTNNAC	3 cut(s)	224, 451, 679
HpyAV	CCTTC	4 cut(s)	367, 461, 963, 1040
HpyCH4III	ACNGT	4 cut(s)	277, 817, 875, 1062
HpyCH4IV	ACGT	1 cut(s)	1003
HpyCH4V	TGCA	6 cut(s)	71, 80, 344, 424, 902, 983
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 931, 989, 1026
HpyF3I	CTNAG	7 cut(s)	34, 126, 150, 186, 257, 482, 935
HpySE526I	ACGT	1 cut(s)	1003
Hsp92I	GRCGYC	1 cut(s)	175
Hsp92II	CATG	1 cut(s)	598
HspAI	GCGC	2 cut(s)	175, 892
KasI	GGCGCC	1 cut(s)	174
Kzo9I	GATC	4 cut(s)	45, 379, 628, 879
LmnI	GCTCC	3 cut(s)	352, 442, 764
Lsp1109I	GCAGC	2 cut(s)	356, 625
MaeI	CTAG	1 cut(s)	911
MaeII	ACGT	1 cut(s)	1003
MaeIII	GTNAC	3 cut(s)	415, 551, 563
MalI	GATC	4 cut(s)	47, 381, 630, 881
MboI	GATC	4 cut(s)	45, 379, 628, 879
MboII	GAAGA	2 cut(s)	114, 1072
MfeI	CAATTG	2 cut(s)	157, 217
MflI	RGATCY	1 cut(s)	379
MhlI	GDGCHC	4 cut(s)	134, 439, 936, 951
MluCI	AATT	3 cut(s)	157, 217, 670
Mly113I	GGCGCC	1 cut(s)	175
MlyI	GAGTC	4 cut(s)	95, 326, 571, 985
MnlI	CCTC	8 cut(s)	203, 224, 297, 477, 484, 566, 599, 1008
MseI	TTAA	2 cut(s)	137, 543
MslI	CAYNNNNRTG	2 cut(s)	458, 920
MspA1I	CMGCKG	2 cut(s)	966, 1010
MspI	CCGG	2 cut(s)	549, 836
MspR9I	CCNGG	3 cut(s)	664, 837, 1035
MunI	CAATTG	2 cut(s)	157, 217
MvaI	CCWGG	2 cut(s)	664, 1035
MwoI	GCNNNNNNNGC	4 cut(s)	77, 931, 989, 1026
NarI	GGCGCC	1 cut(s)	175
NciI	CCSGG	1 cut(s)	837
NdeII	GATC	4 cut(s)	45, 379, 628, 879
NlaIII	CATG	1 cut(s)	598
NlaIV	GGNNCC	7 cut(s)	8, 92, 176, 704, 950, 1028, 1055
NmuCI	GTSAC	2 cut(s)	551, 563
NsbI	TGCGCA	1 cut(s)	893
PfeI	GAWTC	5 cut(s)	182, 293, 307, 599, 994
PfoI	TCCNGGA	1 cut(s)	1033
PinAI	ACCGGT	1 cut(s)	548
PkrI	GCNGC	2 cut(s)	346, 640
PleI	GAGTC	4 cut(s)	95, 325, 570, 984
PluTI	GGCGCC	1 cut(s)	178
PpsI	GAGTC	4 cut(s)	95, 325, 570, 984
PpuMI	RGGWCCY	1 cut(s)	702
Psp124BI	GAGCTC	2 cut(s)	439, 936
Psp1406I	AACGTT	1 cut(s)	1003
Psp5II	RGGWCCY	1 cut(s)	702
Psp6I	CCWGG	2 cut(s)	662, 1033
PspGI	CCWGG	2 cut(s)	662, 1033
PspN4I	GGNNCC	7 cut(s)	8, 92, 176, 704, 950, 1028, 1055
PspPI	GGNCC	3 cut(s)	38, 91, 702
PspPPI	RGGWCCY	1 cut(s)	702
PstI	CTGCAG	1 cut(s)	346
PstNI	CAGNNNCTG	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	379
PvuII	CAGCTG	1 cut(s)	1010
RsaI	GTAC	2 cut(s)	116, 191
RsaNI	GTAC	2 cut(s)	115, 190
RseI	CAYNNNNRTG	2 cut(s)	458, 920
SacI	GAGCTC	2 cut(s)	439, 936
SalI	GTCGAC	1 cut(s)	677
SaqAI	TTAA	2 cut(s)	137, 543
SatI	GCNGC	2 cut(s)	345, 639
Sau3AI	GATC	4 cut(s)	45, 379, 628, 879
Sau96I	GGNCC	3 cut(s)	38, 91, 702
SchI	GAGTC	4 cut(s)	95, 326, 571, 985
ScrFI	CCNGG	3 cut(s)	664, 837, 1035
SduI	GDGCHC	4 cut(s)	134, 439, 936, 951
SfcI	CTRYAG	3 cut(s)	28, 342, 961
SfoI	GGCGCC	1 cut(s)	176
SinI	GGWCC	2 cut(s)	91, 702
SmiMI	CAYNNNNRTG	2 cut(s)	458, 920
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
Sse9I	AATT	3 cut(s)	157, 217, 670
SsiI	CCGC	2 cut(s)	525, 966
SspDI	GGCGCC	1 cut(s)	174
SspI	AATATT	1 cut(s)	614
SspMI	CTAG	1 cut(s)	911
SstI	GAGCTC	2 cut(s)	439, 936
StyD4I	CCNGG	3 cut(s)	662, 835, 1033
StyI	CCWWGG	2 cut(s)	230, 580
TaaI	ACNGT	4 cut(s)	277, 817, 875, 1062
TaiI	ACGT	1 cut(s)	1006
TaqI	TCGA	2 cut(s)	678, 690
TasI	AATT	3 cut(s)	157, 217, 670
TfiI	GAWTC	5 cut(s)	182, 293, 307, 599, 994
Tru1I	TTAA	2 cut(s)	137, 543
Tru9I	TTAA	2 cut(s)	137, 543
TscAI	CASTG	4 cut(s)	282, 560, 822, 880
TseFI	GTSAC	2 cut(s)	551, 563
TseI	GCWGC	2 cut(s)	344, 638
Tsp45I	GTSAC	2 cut(s)	551, 563
TspDTI	ATGAA	2 cut(s)	278, 765
TspRI	CASTG	4 cut(s)	282, 560, 822, 880
VpaK11BI	GGWCC	2 cut(s)	91, 702
XmiI	GTMKAC	1 cut(s)	678
XspI	CTAG	1 cut(s)	911

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.